Wall clock time and date at job start Tue Mar 31 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47357 * 239.99964 * 3 2 1 5 5 H 1.48498 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47336 * 120.00237 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 163.06160 * 7 2 1 9 9 C 1.41111 * 119.99546 * 343.06447 * 7 2 1 10 10 C 1.40885 * 120.10536 * 334.52369 * 9 7 2 11 11 C 1.36315 * 119.89334 * 180.30167 * 10 9 7 12 12 C 1.40016 * 120.10695 * 359.47978 * 11 10 9 13 13 C 1.47634 * 119.89772 * 180.25948 * 12 11 10 14 14 O 1.21592 * 120.00292 * 180.25009 * 13 12 11 15 15 N 1.34776 * 119.99869 * 0.24248 * 13 12 11 16 16 C 1.46502 * 119.99692 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46802 * 180.02562 * 16 15 13 18 18 S 1.81405 * 109.46847 * 180.02562 * 17 16 15 19 19 N 1.65602 * 104.44749 * 179.97438 * 18 17 16 20 20 O 1.42101 * 110.54046 * 291.62319 * 18 17 16 21 21 O 1.42097 * 110.54433 * 68.37471 * 18 17 16 22 22 C 1.40013 * 120.20367 * 0.50191 * 12 11 10 23 23 C 1.36313 * 120.11052 * 359.77407 * 22 12 11 24 24 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.05566 * 0.03454 * 10 9 7 26 26 H 1.08000 * 119.94417 * 179.70468 * 11 10 9 27 27 H 0.97001 * 120.00198 * 0.02562 * 15 13 12 28 28 H 1.09000 * 109.47191 * 299.99973 * 16 15 13 29 29 H 1.09002 * 109.47516 * 60.00456 * 16 15 13 30 30 H 1.09000 * 109.47033 * 299.99834 * 17 16 15 31 31 H 1.08994 * 109.47452 * 60.00133 * 17 16 15 32 32 H 0.97002 * 119.99958 * 0.02562 * 19 18 17 33 33 H 0.96996 * 120.00072 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.94505 * 179.75439 * 22 12 11 35 35 H 1.08007 * 120.05439 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2730 9 6 1.3478 -2.4101 0.3549 10 6 0.2175 -2.3706 1.1950 11 6 -0.4128 -3.5288 1.5406 12 6 0.0548 -4.7554 1.0534 13 6 -0.6348 -6.0064 1.4260 14 8 -0.2276 -7.0730 1.0077 15 7 -1.7157 -5.9662 2.2301 16 6 -2.3997 -7.2078 2.6003 17 6 -3.5852 -6.8845 3.5120 18 16 -4.4317 -8.4219 3.9710 19 7 -5.6775 -7.9323 4.9461 20 8 -5.0749 -8.9937 2.8403 21 8 -3.6097 -9.2088 4.8220 22 6 1.1775 -4.7995 0.2179 23 6 1.8178 -3.6471 -0.1286 24 1 -0.4850 0.8401 0.0004 25 1 -0.1464 -1.4247 1.5680 26 1 -1.2765 -3.5000 2.1884 27 1 -2.0408 -5.1154 2.5636 28 1 -2.7593 -7.7068 1.7004 29 1 -1.7048 -7.8627 3.1259 30 1 -3.2260 -6.3853 4.4119 31 1 -4.2801 -6.2298 2.9861 32 1 -5.8005 -6.9897 5.1393 33 1 -6.2845 -8.5880 5.3235 34 1 1.5370 -5.7482 -0.1523 35 1 2.6840 -3.6822 -0.7728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340461175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:31 Heat of formation + Delta-G solvation = -128.568098 kcal Electronic energy + Delta-G solvation = -20767.248003 eV Core-core repulsion = 17276.410152 eV Total energy + Delta-G solvation = -3490.837851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83186 -38.96070 -38.11133 -37.03977 -36.44962 -35.67161 -34.02526 -32.76235 -31.38064 -31.19991 -27.77933 -25.00527 -23.43905 -22.72488 -21.46854 -20.40269 -19.36807 -18.79688 -18.53387 -17.97904 -17.31144 -17.27774 -16.88686 -16.29716 -16.06223 -15.75014 -15.51528 -15.02713 -15.00455 -14.46018 -13.93229 -13.69594 -13.45297 -13.26729 -13.22680 -13.17478 -13.09784 -12.91528 -12.84975 -12.62147 -12.37118 -12.09226 -11.78416 -11.36815 -11.26682 -11.12608 -10.76307 -10.20444 -9.57646 -9.40901 -8.79082 -6.48919 -0.83611 0.42281 1.15186 1.39839 1.44623 1.52511 1.91194 2.09743 2.17851 2.29213 2.71653 2.77428 3.29910 3.37267 3.68274 3.88468 4.18501 4.29074 4.31937 4.44395 4.49994 4.71218 4.92465 5.03131 5.15193 5.29622 5.30503 5.40916 5.58773 5.81319 5.93103 5.98979 6.23026 6.39889 6.53591 6.64899 6.77075 6.88577 7.37275 8.15937 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.002720 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.663410 B =10290.580487 C =10953.399875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.084 0.916 9 C 0.102 3.898 10 C -0.197 4.197 11 C -0.052 4.052 12 C -0.295 4.295 13 C 0.569 3.431 14 O -0.605 6.605 15 N -0.717 5.717 16 C 0.120 3.880 17 C -0.622 4.622 18 S 2.646 3.354 19 N -1.234 6.234 20 O -1.003 7.003 21 O -1.002 7.002 22 C -0.033 4.033 23 C -0.254 4.254 24 H 0.298 0.702 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.416 0.584 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.430 0.570 33 H 0.427 0.573 34 H 0.101 0.899 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.066 -2.404 10.800 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.216 4.216 11 C -0.071 4.071 12 C -0.299 4.299 13 C 0.363 3.637 14 O -0.489 6.489 15 N -0.371 5.371 16 C -0.006 4.006 17 C -0.752 4.752 18 S 2.737 3.263 19 N -0.913 5.913 20 O -0.992 6.992 21 O -0.991 6.991 22 C -0.053 4.053 23 C -0.274 4.274 24 H 0.109 0.891 25 H 0.134 0.866 26 H 0.149 0.851 27 H 0.254 0.746 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.196 0.804 31 H 0.195 0.805 32 H 0.260 0.740 33 H 0.258 0.742 34 H 0.119 0.881 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.700 -3.995 10.153 15.998 hybrid contribution 0.110 1.611 0.045 1.615 sum -11.591 -2.384 10.198 15.621 Atomic orbital electron populations 1.69740 1.09111 1.31703 1.31478 1.26889 0.95587 1.04690 0.90847 0.85165 0.78867 0.75064 0.80223 1.18497 1.18700 1.18246 1.20101 0.98454 0.92166 1.39418 0.89783 1.18148 0.91399 0.92744 0.87836 1.21031 1.00360 0.97530 1.02684 1.20761 0.97902 0.91193 0.97200 1.19132 1.04338 0.92177 1.14269 1.18490 0.79566 0.88632 0.77037 1.90642 1.67846 1.32939 1.57499 1.45573 1.30110 1.10070 1.51380 1.20938 0.92862 0.88361 0.98401 1.30565 1.09738 1.23148 1.11795 1.03481 0.74099 0.75261 0.73429 1.52668 1.49179 1.19571 1.69901 1.93587 1.74556 1.76229 1.54821 1.93585 1.70716 1.67792 1.67027 1.20517 0.93560 0.96966 0.94217 1.20865 1.05167 0.92917 1.08420 0.89113 0.86594 0.85095 0.74558 0.91029 0.90865 0.80410 0.80530 0.74040 0.74173 0.88089 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.69 10.95 21.87 0.24 -36.45 16 2 C 0.04 1.76 5.15 85.35 0.44 2.20 16 3 Si 0.99 33.72 29.59 68.60 2.03 35.75 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 7 C -0.47 -23.41 9.05 23.46 0.21 -23.19 16 8 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 9 C 0.10 5.16 5.57 -21.28 -0.12 5.04 16 10 C -0.20 -9.27 8.63 22.47 0.19 -9.08 16 11 C -0.05 -2.11 9.47 22.25 0.21 -1.90 16 12 C -0.29 -12.93 5.89 -19.94 -0.12 -13.05 16 13 C 0.57 23.00 7.76 86.72 0.67 23.68 16 14 O -0.60 -28.51 16.32 -4.00 -0.07 -28.57 16 15 N -0.72 -20.43 5.50 -466.14 -2.57 -23.00 16 16 C 0.12 2.83 5.68 86.38 0.49 3.32 16 17 C -0.62 -6.80 6.21 71.98 0.45 -6.36 16 18 S 2.65 40.15 5.97 -56.49 -0.34 39.81 16 19 N -1.23 -7.79 9.43 37.02 0.35 -7.44 16 20 O -1.00 -24.35 18.10 -127.65 -2.31 -26.66 16 21 O -1.00 -24.12 18.10 -127.65 -2.31 -26.43 16 22 C -0.03 -1.58 9.52 22.25 0.21 -1.36 16 23 C -0.25 -12.42 9.73 22.47 0.22 -12.21 16 24 H 0.30 12.14 8.29 -92.70 -0.77 11.37 16 25 H 0.12 5.50 6.18 -2.91 -0.02 5.48 16 26 H 0.13 4.07 6.37 -2.91 -0.02 4.05 16 27 H 0.42 9.12 6.47 -92.71 -0.60 8.52 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.18 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.18 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.43 -0.28 8.83 -96.74 -0.85 -1.14 16 33 H 0.43 2.22 8.96 -96.75 -0.87 1.35 16 34 H 0.10 4.68 7.63 -2.91 -0.02 4.66 16 35 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -78.13 319.23 -3.26 -81.39 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -1.15 Total: 24.51 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 2.86 Total: -32.91 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.98 Total: -66.89 kcal Atomic # 8 Polarization: -76.97 SS G_CDS: -4.69 Total: -81.66 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Atomic # 16 Polarization: 40.15 SS G_CDS: -0.34 Total: 39.81 kcal Total: -78.13 -3.26 -81.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340461175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.174 kcal (2) G-P(sol) polarization free energy of solvation -78.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds