Wall clock time and date at job start Tue Mar 31 2020 03:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00290 * 2 1 4 4 O 1.20822 * 119.99705 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99978 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47229 * 180.02562 * 5 3 2 7 7 C 1.36792 * 119.99585 * 263.14711 * 6 5 3 8 8 H 1.08003 * 120.00155 * 358.21626 * 7 6 5 9 9 C 1.39096 * 119.99745 * 178.21260 * 7 6 5 10 10 N 1.31324 * 120.00478 * 89.39652 * 9 7 6 11 11 Si 1.86807 * 119.99822 * 269.39232 * 9 7 6 12 12 H 1.48499 * 109.46956 * 64.98928 * 11 9 7 13 13 H 1.48504 * 109.46968 * 184.98579 * 11 9 7 14 14 H 1.48496 * 109.47297 * 304.98435 * 11 9 7 15 15 C 1.34773 * 120.00308 * 83.14767 * 6 5 3 16 16 O 1.21570 * 119.99917 * 182.62962 * 15 6 5 17 17 C 1.47926 * 119.99613 * 2.62593 * 15 6 5 18 18 N 1.32838 * 119.74879 * 353.95259 * 17 15 6 19 19 C 1.31476 * 121.63965 * 179.97438 * 18 17 15 20 20 C 1.38625 * 120.95560 * 359.97438 * 19 18 17 21 21 C 1.38563 * 119.38586 * 0.27525 * 20 19 18 22 22 C 1.38754 * 118.48766 * 359.44125 * 21 20 19 23 23 Cl 1.73598 * 120.49070 * 180.26123 * 22 21 20 24 24 H 1.08993 * 109.47668 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46440 * 299.99965 * 1 2 3 26 26 H 1.09000 * 109.47532 * 59.99392 * 1 2 3 27 27 H 1.08999 * 109.47520 * 59.99714 * 5 3 2 28 28 H 1.09004 * 109.46935 * 300.00213 * 5 3 2 29 29 H 0.97001 * 120.00317 * 184.91688 * 10 9 7 30 30 H 1.08001 * 119.51874 * 180.02562 * 19 18 17 31 31 H 1.08000 * 120.31267 * 180.02562 * 20 19 18 32 32 H 1.08004 * 120.75277 * 179.72597 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.3109 3.2961 -1.1758 8 1 4.2921 2.7393 -2.1011 9 6 4.6695 4.6400 -1.1799 10 7 5.9261 4.9849 -1.0174 11 14 3.3634 5.9545 -1.4167 12 1 2.4258 5.9337 -0.2653 13 1 4.0124 7.2874 -1.5025 14 1 2.6138 5.6873 -2.6705 15 6 4.0399 3.3646 1.1594 16 8 4.3384 4.5431 1.1547 17 6 3.7404 2.6824 2.4373 18 7 3.2986 1.4297 2.4280 19 6 3.0214 0.7879 3.5415 20 6 3.1816 1.3988 4.7755 21 6 3.6352 2.7068 4.8328 22 6 3.9261 3.3591 3.6432 23 17 4.5042 4.9960 3.6548 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.9558 0.7808 -0.8908 28 1 3.9564 0.7804 0.8892 29 1 6.1670 5.9220 -0.9488 30 1 2.6645 -0.2304 3.4940 31 1 2.9511 0.8617 5.6836 32 1 3.7638 3.2056 5.7821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340559120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:34 Heat of formation + Delta-G solvation = -47.409895 kcal Electronic energy + Delta-G solvation = -22768.630574 eV Core-core repulsion = 19143.435206 eV Total energy + Delta-G solvation = -3625.195368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.055 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.78485 -40.94219 -39.51656 -37.46175 -37.26120 -35.92507 -34.82700 -33.34592 -31.92444 -30.06695 -27.91245 -27.03422 -24.83682 -24.31856 -22.59687 -21.54741 -19.49847 -18.58739 -18.23014 -17.80930 -17.23194 -17.17583 -17.02233 -16.68607 -15.95144 -15.83804 -15.58789 -14.70526 -14.56730 -14.41810 -14.24797 -14.05766 -13.85528 -13.27355 -13.11985 -12.96265 -12.90272 -12.66569 -12.63585 -12.11820 -11.98634 -11.67264 -11.58055 -10.84487 -10.77908 -10.44288 -10.19449 -9.84236 -9.45072 -8.98225 -5.46171 -0.27680 0.14368 1.24455 1.28901 1.38078 1.44818 1.52105 1.72741 2.11294 2.30281 2.61955 2.95549 3.13927 3.40953 3.84718 3.88637 4.05113 4.18701 4.34059 4.40214 4.40970 4.45143 4.50135 4.73806 4.87164 4.96749 5.04771 5.22290 5.48215 5.60201 5.84590 6.57746 6.79169 6.96095 7.15169 7.41039 7.94787 8.26923 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.010145 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.661011 B = 2759.393653 C = 4533.848031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.470 3.530 4 O -0.545 6.545 5 C 0.105 3.895 6 N -0.371 5.371 7 C -0.508 4.508 8 H 0.107 0.893 9 C 0.219 3.781 10 N -0.700 5.700 11 Si 0.858 3.142 12 H -0.306 1.306 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.405 3.595 16 O -0.589 6.589 17 C 0.099 3.901 18 N -0.491 5.491 19 C 0.098 3.902 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.085 4.085 23 Cl -0.052 7.052 24 H 0.141 0.859 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.163 0.837 29 H 0.289 0.711 30 H 0.204 0.796 31 H 0.192 0.808 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -13.071 10.667 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.434 6.434 5 C -0.020 4.020 6 N -0.085 5.085 7 C -0.624 4.624 8 H 0.125 0.875 9 C -0.016 4.016 10 N -0.320 5.320 11 Si 0.681 3.319 12 H -0.235 1.235 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.201 3.799 16 O -0.478 6.478 17 C -0.036 4.036 18 N -0.204 5.204 19 C -0.061 4.061 20 C -0.170 4.170 21 C -0.093 4.093 22 C -0.116 4.116 23 Cl -0.023 7.023 24 H 0.159 0.841 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.179 0.821 29 H 0.101 0.899 30 H 0.220 0.780 31 H 0.210 0.790 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.284 -12.432 9.766 16.669 hybrid contribution -0.787 1.909 0.421 2.107 sum -6.071 -10.523 10.187 15.855 Atomic orbital electron populations 1.23446 0.75756 1.05489 1.01530 1.86473 1.24153 1.32221 1.84216 1.24494 0.92750 0.81154 0.70272 1.90649 1.67627 1.38170 1.46967 1.21785 0.87200 0.84847 1.08172 1.43343 1.50556 1.09051 1.05558 1.18488 1.61265 0.95819 0.86787 0.87511 1.24990 0.93395 0.98847 0.84370 1.70626 1.21183 1.21586 1.18645 0.87348 0.86830 0.80541 0.77185 1.23456 1.20585 1.19789 1.17614 0.91529 0.87635 0.83079 1.90530 1.57809 1.15800 1.83665 1.21159 0.97795 0.91095 0.93595 1.68038 1.13212 1.06669 1.32511 1.23761 0.93447 1.01444 0.87426 1.22641 0.99368 0.93903 1.01071 1.21893 0.95393 0.95534 0.96501 1.22071 1.04892 0.89004 0.95633 1.98368 1.86758 1.18507 1.98686 0.84077 0.93051 0.93267 0.86278 0.82065 0.89944 0.77963 0.79036 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.35 -10.98 10.56 -51.41 -0.54 -11.52 16 3 C 0.47 18.98 6.63 71.24 0.47 19.45 16 4 O -0.55 -27.20 16.01 21.98 0.35 -26.85 16 5 C 0.11 4.29 5.57 85.63 0.48 4.77 16 6 N -0.37 -19.46 2.19 -642.82 -1.41 -20.86 16 7 C -0.51 -28.71 9.49 84.13 0.80 -27.91 16 8 H 0.11 5.84 8.00 -2.91 -0.02 5.81 16 9 C 0.22 12.58 3.01 84.97 0.26 12.84 16 10 N -0.70 -39.56 13.56 21.69 0.29 -39.27 16 11 Si 0.86 47.20 28.20 68.60 1.93 49.14 16 12 H -0.31 -19.12 7.11 99.48 0.71 -18.41 16 13 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 14 H -0.27 -14.36 7.11 99.48 0.71 -13.65 16 15 C 0.41 21.98 7.31 86.81 0.63 22.62 16 16 O -0.59 -35.18 9.93 -3.94 -0.04 -35.22 16 17 C 0.10 4.36 6.63 41.87 0.28 4.64 16 18 N -0.49 -17.24 4.98 -184.88 -0.92 -18.16 16 19 C 0.10 2.31 11.18 84.84 0.95 3.26 16 20 C -0.15 -2.92 10.11 22.44 0.23 -2.69 16 21 C -0.07 -1.76 9.98 22.47 0.22 -1.54 16 22 C -0.09 -3.31 6.37 22.70 0.14 -3.16 16 23 Cl -0.05 -2.21 26.06 -2.72 -0.07 -2.28 16 24 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.28 8.13 -2.38 -0.02 1.26 16 26 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.12 4.29 7.95 -2.39 -0.02 4.27 16 28 H 0.16 5.90 5.22 -3.53 -0.02 5.88 16 29 H 0.29 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.19 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -80.36 297.70 6.42 -73.94 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: 1.16 Total: -3.12 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: 5.66 Total: 34.21 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.03 Total: -78.29 kcal Atomic # 8 Polarization: -73.36 SS G_CDS: -0.23 Total: -73.59 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.93 Total: 49.14 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.07 Total: -2.28 kcal Total: -80.36 6.42 -73.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340559120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.533 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds