Wall clock time and date at job start Tue Mar 31 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37783 * 119.90560 * 2 1 4 4 C 1.39689 * 119.90466 * 179.74626 * 3 2 1 5 5 C 1.47574 * 120.14067 * 180.24955 * 4 3 2 6 6 O 1.21587 * 119.99793 * 180.25040 * 5 4 3 7 7 N 1.34769 * 119.99890 * 0.25855 * 5 4 3 8 8 C 1.46507 * 119.99793 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47065 * 179.97438 * 8 7 5 10 10 O 1.21300 * 119.99963 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00204 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00217 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99572 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99739 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99510 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00004 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46952 * 90.00752 * 16 14 12 18 18 H 1.48507 * 109.47083 * 210.00154 * 16 14 12 19 19 H 1.48503 * 109.47743 * 330.00604 * 16 14 12 20 20 C 1.39946 * 119.71610 * 0.50429 * 4 3 2 21 21 F 1.35104 * 120.09358 * 179.76895 * 20 4 3 22 22 C 1.38153 * 119.80723 * 359.49598 * 20 4 3 23 23 C 1.38535 * 120.09302 * 0.27350 * 22 20 4 24 24 F 1.35102 * 119.85416 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.47002 * 269.97615 * 1 2 3 26 26 H 1.09004 * 109.47128 * 29.97686 * 1 2 3 27 27 H 1.09001 * 109.47290 * 149.97934 * 1 2 3 28 28 H 1.07994 * 120.04508 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00469 * 359.97438 * 7 5 4 30 30 H 1.08998 * 109.47110 * 299.99659 * 8 7 5 31 31 H 1.09006 * 109.46741 * 59.99930 * 8 7 5 32 32 H 0.97000 * 119.99524 * 0.02562 * 11 9 8 33 33 H 0.96999 * 119.99519 * 179.97438 * 15 14 12 34 34 H 1.07995 * 119.95012 * 180.24877 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1944 0.0000 4 6 3.5908 1.1944 0.0054 5 6 4.3318 2.4705 0.0109 6 8 5.5477 2.4675 0.0110 7 7 3.6608 3.6393 0.0161 8 6 4.3965 4.9063 0.0223 9 6 3.4200 6.0541 0.0266 10 8 2.2269 5.8354 0.0253 11 7 3.8723 7.3237 0.0320 12 6 2.9840 8.3679 0.0365 13 1 1.9217 8.1731 0.0353 14 6 3.4505 9.6768 0.0416 15 7 2.5989 10.6777 0.0464 16 14 5.2878 10.0135 0.0429 17 1 5.7746 10.1083 -1.3568 18 1 5.5561 11.2927 0.7479 19 1 5.9934 8.9074 0.7386 20 6 4.2845 -0.0210 0.0000 21 9 5.6355 -0.0299 0.0004 22 6 3.5838 -1.2117 0.0000 23 6 2.1985 -1.2025 -0.0004 24 9 1.5182 -2.3697 -0.0009 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6531 2.1292 0.0004 29 1 2.6908 3.6417 0.0158 30 1 5.0229 4.9583 0.9127 31 1 5.0236 4.9665 -0.8673 32 1 4.8264 7.4985 0.0327 33 1 2.9246 11.5914 0.0503 34 1 4.1168 -2.1510 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343513111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:43 Heat of formation + Delta-G solvation = -157.705848 kcal Electronic energy + Delta-G solvation = -22888.412487 eV Core-core repulsion = 18842.470742 eV Total energy + Delta-G solvation = -4045.941745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.18412 -50.09016 -41.40030 -40.29718 -39.34841 -36.33307 -35.46550 -33.84369 -33.70146 -32.49758 -29.39134 -27.76476 -26.45785 -24.99249 -23.35496 -21.60205 -21.47141 -20.57029 -19.42680 -18.89649 -18.52760 -17.48794 -17.30794 -16.86811 -16.78524 -16.73338 -16.41856 -16.30257 -15.99542 -15.57897 -15.50311 -15.20304 -14.75819 -14.31220 -14.27904 -14.25156 -14.01681 -13.70987 -13.50400 -13.01103 -12.97294 -12.62011 -12.53598 -12.44416 -12.00466 -11.57984 -11.27350 -10.66831 -10.42496 -10.32125 -10.19917 -9.72604 -8.45541 -6.07367 -0.67014 -0.17465 1.31398 1.34324 1.43980 1.47485 1.78217 1.81057 2.20574 2.34839 2.63479 2.82682 3.10993 3.14424 3.34089 3.44409 3.55960 3.90555 3.98442 4.33831 4.38520 4.41931 4.49485 4.62317 4.64219 4.75190 4.79075 5.08898 5.10892 5.17302 5.47890 5.54029 5.88160 6.32532 6.47936 6.78032 6.96187 7.28937 7.76772 8.70726 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.027024 B = 0.003094 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.866125 B = 9047.221157 C =10062.634172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.128 4.128 3 C -0.024 4.024 4 C -0.188 4.188 5 C 0.560 3.440 6 O -0.564 6.564 7 N -0.700 5.700 8 C 0.116 3.884 9 C 0.446 3.554 10 O -0.612 6.612 11 N -0.577 5.577 12 C -0.331 4.331 13 H 0.066 0.934 14 C -0.007 4.007 15 N -0.925 5.925 16 Si 0.957 3.043 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.232 1.232 20 C 0.166 3.834 21 F -0.123 7.123 22 C -0.188 4.188 23 C 0.155 3.845 24 F -0.121 7.121 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.415 0.585 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.392 0.608 33 H 0.281 0.719 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -23.352 -0.055 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.129 4.129 3 C -0.043 4.043 4 C -0.192 4.192 5 C 0.348 3.652 6 O -0.444 6.444 7 N -0.355 5.355 8 C -0.011 4.011 9 C 0.233 3.767 10 O -0.498 6.498 11 N -0.217 5.217 12 C -0.460 4.460 13 H 0.084 0.916 14 C -0.207 4.207 15 N -0.565 5.565 16 Si 0.777 3.223 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.156 1.156 20 C 0.146 3.854 21 F -0.101 7.101 22 C -0.207 4.207 23 C 0.135 3.865 24 F -0.099 7.099 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.255 0.745 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.900 -23.268 -0.054 23.346 hybrid contribution 0.553 0.673 0.003 0.871 sum 2.453 -22.595 -0.050 22.728 Atomic orbital electron populations 1.20879 0.87238 1.04880 1.04388 1.20148 0.99108 0.90572 1.03035 1.21203 0.90729 0.99438 0.92928 1.19967 0.95061 0.91855 1.12351 1.18130 0.86855 0.83798 0.76456 1.90820 1.14254 1.87894 1.51407 1.45547 1.11779 1.04138 1.73987 1.20952 0.93262 0.81339 1.05546 1.20407 0.89494 0.84294 0.82474 1.90522 1.18267 1.84550 1.56419 1.41924 1.08644 1.04970 1.66143 1.19040 0.90913 0.85304 1.50694 0.91592 1.26040 1.04714 0.94206 0.95732 1.69776 1.37407 1.00056 1.49247 0.85470 0.77000 0.79792 0.80031 1.18151 1.19949 1.15579 1.17404 0.77199 0.92737 0.98085 1.91588 1.28441 1.97200 1.92842 1.21102 0.93174 0.98922 1.07530 1.17357 0.88820 0.81488 0.98791 1.91551 1.79567 1.45674 1.93099 0.89172 0.89312 0.90052 0.82044 0.74513 0.87490 0.87404 0.77222 0.90927 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.83 71.23 0.70 -0.58 16 2 C -0.13 -1.96 5.88 -19.86 -0.12 -2.08 16 3 C -0.02 -0.44 9.18 22.51 0.21 -0.24 16 4 C -0.19 -4.46 5.88 -20.05 -0.12 -4.58 16 5 C 0.56 16.59 7.76 86.71 0.67 17.27 16 6 O -0.56 -20.15 15.34 -3.99 -0.06 -20.21 16 7 N -0.70 -20.53 5.48 -469.96 -2.57 -23.11 16 8 C 0.12 3.64 6.15 85.63 0.53 4.17 16 9 C 0.45 18.57 7.85 87.66 0.69 19.25 16 10 O -0.61 -29.84 15.24 -3.09 -0.05 -29.88 16 11 N -0.58 -25.66 5.09 -306.97 -1.56 -27.22 16 12 C -0.33 -18.28 10.16 84.04 0.85 -17.43 16 13 H 0.07 4.30 7.39 -2.91 -0.02 4.28 16 14 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 15 N -0.93 -53.50 13.96 21.66 0.30 -53.20 16 16 Si 0.96 37.40 27.74 68.60 1.90 39.30 16 17 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 20 C 0.17 3.79 7.28 22.66 0.17 3.96 16 21 F -0.12 -3.37 15.55 44.97 0.70 -2.67 16 22 C -0.19 -3.14 9.99 22.32 0.22 -2.92 16 23 C 0.16 2.46 7.24 22.45 0.16 2.62 16 24 F -0.12 -1.83 16.46 44.97 0.74 -1.09 16 25 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.09 0.86 8.08 -2.38 -0.02 0.84 16 27 H 0.08 0.79 7.63 -2.39 -0.02 0.77 16 28 H 0.16 2.59 6.40 -2.91 -0.02 2.57 16 29 H 0.41 11.64 5.46 -92.71 -0.51 11.13 16 30 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 32 H 0.39 14.63 5.76 -92.71 -0.53 14.09 16 33 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -71.70 309.80 3.92 -67.77 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.09 Total: 30.76 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 4.43 Total: 19.55 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.83 Total: -103.52 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.11 Total: -50.10 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 1.44 Total: -3.76 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.90 Total: 39.30 kcal Total: -71.70 3.92 -67.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.932 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds