Wall clock time and date at job start Tue Mar 31 2020 03:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38382 * 119.93047 * 269.72958 * 6 3 2 8 8 C 1.38339 * 120.29368 * 179.72249 * 7 6 3 9 9 C 1.37977 * 120.14471 * 0.54719 * 8 7 6 10 10 C 1.39552 * 119.85042 * 359.72875 * 9 8 7 11 11 C 1.47849 * 120.14327 * 180.02562 * 10 9 8 12 12 O 1.21548 * 119.99925 * 179.97438 * 11 10 9 13 13 N 1.34779 * 120.00005 * 359.97118 * 11 10 9 14 14 C 1.46501 * 120.00044 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46861 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00482 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99763 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47370 * 60.00011 * 19 17 15 21 21 H 1.48510 * 109.46993 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47127 * 299.99428 * 19 17 15 23 23 C 1.37937 * 119.92555 * 89.99943 * 6 3 2 24 24 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 25 25 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 26 26 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 27 27 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 28 28 H 1.08004 * 119.85181 * 359.97438 * 7 6 3 29 29 H 1.07998 * 119.92710 * 180.25515 * 8 7 6 30 30 H 1.08004 * 120.07367 * 179.74956 * 9 8 7 31 31 H 0.97003 * 119.99757 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46976 * 300.00492 * 14 13 11 33 33 H 1.09000 * 109.46972 * 60.00777 * 14 13 11 34 34 H 0.97008 * 120.00408 * 180.02562 * 18 17 15 35 35 H 1.07992 * 120.07480 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8539 3.1096 1.6046 8 6 0.5598 3.7460 2.7972 9 6 1.3469 3.5309 3.9098 10 6 2.4384 2.6649 3.8316 11 6 3.2859 2.4294 5.0200 12 8 4.2356 1.6742 4.9491 13 7 3.0053 3.0521 6.1819 14 6 3.8454 2.8191 7.3593 15 6 3.3211 3.6272 8.5182 16 1 2.4496 4.2522 8.3905 17 6 3.9547 3.5695 9.7415 18 7 5.0162 2.8089 9.8970 19 14 3.3052 4.5718 11.1778 20 1 1.9098 4.1615 11.4770 21 1 4.1567 4.3355 12.3714 22 1 3.3328 6.0145 10.8273 23 6 2.7264 2.0215 2.6267 24 1 -0.3634 0.5095 -0.8924 25 1 -0.3634 -1.0276 0.0050 26 1 -0.3634 0.5181 0.8876 27 1 1.9500 -0.8401 0.0041 28 1 0.2374 3.2850 0.7353 29 1 -0.2850 4.4162 2.8562 30 1 1.1186 4.0315 4.8392 31 1 2.2471 3.6545 6.2385 32 1 3.8249 1.7600 7.6164 33 1 4.8698 3.1201 7.1400 34 1 5.4617 2.7680 10.7577 35 1 3.5693 1.3498 2.5598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343897322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:04 Heat of formation + Delta-G solvation = -86.221189 kcal Electronic energy + Delta-G solvation = -21191.463528 eV Core-core repulsion = 17702.461977 eV Total energy + Delta-G solvation = -3489.001551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95406 -38.04476 -37.44200 -36.06325 -35.31627 -34.40672 -32.63361 -31.46500 -31.29477 -27.39982 -26.34496 -24.22955 -23.46801 -22.20446 -20.47504 -19.59468 -18.63290 -17.85781 -16.78111 -16.61725 -16.25225 -15.86813 -15.54412 -15.02958 -14.68776 -14.58983 -14.27930 -14.13552 -14.01815 -13.22214 -13.09016 -13.01411 -12.54676 -12.30942 -12.24769 -12.03606 -11.92354 -11.88410 -11.76272 -11.10125 -11.03408 -10.93464 -10.39034 -9.99461 -9.65703 -9.50316 -9.34308 -9.20232 -8.81589 -8.01831 -6.22916 -4.30915 0.12852 0.50793 0.89519 2.65904 2.97306 3.20841 3.25820 3.27221 3.49245 3.78803 3.88674 4.16195 4.29885 4.57912 4.64892 4.66639 4.84681 5.05237 5.06096 5.13249 5.17356 5.34798 5.39423 5.46121 5.63228 5.78982 6.00131 6.05944 6.51605 6.57533 7.20022 7.25855 7.42147 7.55835 7.88372 8.45425 8.66218 8.90981 9.35558 10.87164 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.033562 B = 0.003048 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.077419 B = 9183.034092 C = 9584.054944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.120 6.120 3 S 2.700 3.300 4 O -0.953 6.953 5 O -0.957 6.957 6 C -0.688 4.688 7 C -0.011 4.011 8 C -0.145 4.145 9 C -0.033 4.033 10 C -0.139 4.139 11 C 0.537 3.463 12 O -0.545 6.545 13 N -0.703 5.703 14 C 0.249 3.751 15 C -0.548 4.548 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.034 3.966 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.420 0.580 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.390 0.610 32 H 0.030 0.970 33 H 0.031 0.969 34 H 0.268 0.732 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 -2.449 -18.652 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.880 5.880 3 S 2.788 3.212 4 O -0.943 6.943 5 O -0.947 6.947 6 C -0.775 4.775 7 C -0.030 4.030 8 C -0.164 4.164 9 C -0.052 4.052 10 C -0.143 4.143 11 C 0.322 3.678 12 O -0.425 6.425 13 N -0.351 5.351 14 C 0.128 3.872 15 C -0.586 4.586 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C 0.014 3.986 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.255 0.745 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.224 0.776 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.295 -2.575 -19.159 22.910 hybrid contribution -0.836 0.602 1.753 2.034 sum -13.130 -1.973 -17.406 21.892 Atomic orbital electron populations 1.21509 0.78452 1.04389 1.02027 1.55325 1.16234 1.24492 1.91996 1.01782 0.72928 0.72709 0.73751 1.93630 1.30465 1.83191 1.86991 1.93582 1.79007 1.68617 1.53503 1.30862 1.08028 1.17061 1.21536 1.21066 0.92839 0.90907 0.98213 1.21241 1.00972 1.01501 0.92703 1.21791 0.91644 0.92799 0.99002 1.20465 0.97857 1.00422 0.95532 1.18149 0.84736 0.81807 0.83139 1.90762 1.29733 1.37433 1.84524 1.46445 1.32269 1.45124 1.11237 1.19195 0.90332 0.97527 0.80105 1.21150 1.14157 1.28170 0.95104 0.91928 1.24948 0.94702 0.95427 0.98840 1.69957 1.19103 1.37891 1.25131 0.86451 0.78823 0.80319 0.81172 1.20040 1.21000 1.20020 1.21050 0.94964 0.93148 0.89427 0.91279 0.89817 0.92082 0.74523 0.83994 0.84372 0.84369 0.77641 0.95162 0.95139 0.92261 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.13 59.85 0.67 1.10 16 2 N -1.12 -8.16 6.19 -16.63 -0.10 -8.26 16 3 S 2.70 29.27 5.74 -107.50 -0.62 28.66 16 4 O -0.95 -13.61 17.27 -57.17 -0.99 -14.59 16 5 O -0.96 -12.00 17.00 -57.17 -0.97 -12.97 16 6 C -0.69 -8.04 5.94 -39.64 -0.24 -8.27 16 7 C -0.01 -0.11 9.52 -39.49 -0.38 -0.48 16 8 C -0.15 -1.39 10.03 -39.64 -0.40 -1.79 16 9 C -0.03 -0.40 9.54 -39.19 -0.37 -0.77 16 10 C -0.14 -2.16 5.87 -104.97 -0.62 -2.78 16 11 C 0.54 10.91 7.77 -12.33 -0.10 10.81 16 12 O -0.54 -13.21 16.35 5.32 0.09 -13.13 16 13 N -0.70 -14.55 5.50 -62.43 -0.34 -14.89 16 14 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 15 C -0.55 -14.52 9.28 -34.44 -0.32 -14.84 16 16 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -25.66 13.29 55.43 0.74 -24.93 16 19 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 23 C 0.03 0.50 9.07 -39.18 -0.36 0.14 16 24 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 27 H 0.42 2.36 8.96 -34.47 -0.31 2.05 16 28 H 0.14 1.03 7.60 -52.48 -0.40 0.63 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.14 1.41 6.41 -52.48 -0.34 1.07 16 31 H 0.39 6.72 6.36 -40.82 -0.26 6.46 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 2.34 7.20 -52.49 -0.38 1.96 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -36.35 322.40 -8.34 -44.69 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.75 Total: 3.93 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.23 Total: -8.76 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.29 Total: -48.08 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.87 Total: -40.69 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 29.27 SS G_CDS: -0.62 Total: 28.66 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.35 -8.34 -44.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343897322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.532 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds