Wall clock time and date at job start Tue Mar 31 2020 03:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38382 * 119.93047 * 269.72958 * 6 3 2 8 8 C 1.38339 * 120.29368 * 179.72249 * 7 6 3 9 9 C 1.37977 * 120.14471 * 0.54719 * 8 7 6 10 10 C 1.39552 * 119.85042 * 359.72875 * 9 8 7 11 11 C 1.47849 * 120.14327 * 180.02562 * 10 9 8 12 12 O 1.21548 * 119.99925 * 179.97438 * 11 10 9 13 13 N 1.34779 * 120.00005 * 359.97118 * 11 10 9 14 14 C 1.46501 * 120.00044 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46861 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00482 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99763 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47370 * 60.00011 * 19 17 15 21 21 H 1.48510 * 109.46993 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47127 * 299.99428 * 19 17 15 23 23 C 1.37937 * 119.92555 * 89.99943 * 6 3 2 24 24 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 25 25 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 26 26 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 27 27 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 28 28 H 1.08004 * 119.85181 * 359.97438 * 7 6 3 29 29 H 1.07998 * 119.92710 * 180.25515 * 8 7 6 30 30 H 1.08004 * 120.07367 * 179.74956 * 9 8 7 31 31 H 0.97003 * 119.99757 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46976 * 300.00492 * 14 13 11 33 33 H 1.09000 * 109.46972 * 60.00777 * 14 13 11 34 34 H 0.97008 * 120.00408 * 180.02562 * 18 17 15 35 35 H 1.07992 * 120.07480 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8539 3.1096 1.6046 8 6 0.5598 3.7460 2.7972 9 6 1.3469 3.5309 3.9098 10 6 2.4384 2.6649 3.8316 11 6 3.2859 2.4294 5.0200 12 8 4.2356 1.6742 4.9491 13 7 3.0053 3.0521 6.1819 14 6 3.8454 2.8191 7.3593 15 6 3.3211 3.6272 8.5182 16 1 2.4496 4.2522 8.3905 17 6 3.9547 3.5695 9.7415 18 7 5.0162 2.8089 9.8970 19 14 3.3052 4.5718 11.1778 20 1 1.9098 4.1615 11.4770 21 1 4.1567 4.3355 12.3714 22 1 3.3328 6.0145 10.8273 23 6 2.7264 2.0215 2.6267 24 1 -0.3634 0.5095 -0.8924 25 1 -0.3634 -1.0276 0.0050 26 1 -0.3634 0.5181 0.8876 27 1 1.9500 -0.8401 0.0041 28 1 0.2374 3.2850 0.7353 29 1 -0.2850 4.4162 2.8562 30 1 1.1186 4.0315 4.8392 31 1 2.2471 3.6545 6.2385 32 1 3.8249 1.7600 7.6164 33 1 4.8698 3.1201 7.1400 34 1 5.4617 2.7680 10.7577 35 1 3.5693 1.3498 2.5598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343897322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:03 Heat of formation + Delta-G solvation = -116.752307 kcal Electronic energy + Delta-G solvation = -21192.787456 eV Core-core repulsion = 17702.461977 eV Total energy + Delta-G solvation = -3490.325480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27144 -39.40216 -38.41533 -37.03576 -36.31466 -35.89329 -34.53643 -32.65280 -32.28967 -29.34307 -26.82267 -25.71965 -24.59545 -23.72674 -21.86230 -20.66743 -19.84876 -18.70070 -18.39097 -17.55835 -17.32230 -17.11636 -17.07987 -16.31794 -16.29589 -15.98846 -15.45111 -15.00757 -14.78243 -14.63225 -14.30805 -14.10215 -13.81877 -13.70982 -13.41315 -13.29351 -13.23171 -12.97762 -12.83421 -12.69169 -12.53035 -12.25659 -11.97579 -11.55231 -11.06302 -10.83029 -10.64195 -10.53116 -10.25806 -9.90389 -8.31219 -6.48921 -0.72692 -0.46263 -0.12987 1.43049 1.47292 1.55535 1.62933 2.02059 2.21644 2.43959 2.50171 2.73197 3.04012 3.24931 3.61820 3.71562 3.88010 4.00954 4.24040 4.25621 4.42100 4.70221 4.70746 4.84430 4.93064 5.02956 5.03965 5.09390 5.10958 5.17460 5.37762 5.57039 5.66103 5.79088 6.05824 6.59280 6.73935 7.16988 7.31913 8.80905 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.033562 B = 0.003048 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.077419 B = 9183.034092 C = 9584.054944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.111 6.111 3 S 2.720 3.280 4 O -0.995 6.995 5 O -0.970 6.970 6 C -0.688 4.688 7 C 0.002 3.998 8 C -0.129 4.129 9 C -0.029 4.029 10 C -0.165 4.165 11 C 0.535 3.465 12 O -0.598 6.598 13 N -0.696 5.696 14 C 0.265 3.735 15 C -0.559 4.559 16 H 0.088 0.912 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.287 1.287 22 H -0.261 1.261 23 C 0.017 3.983 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.428 0.572 28 H 0.178 0.822 29 H 0.186 0.814 30 H 0.157 0.843 31 H 0.409 0.591 32 H -0.008 1.008 33 H -0.010 1.010 34 H 0.270 0.730 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.549 -0.558 -19.366 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.875 5.875 3 S 2.808 3.192 4 O -0.985 6.985 5 O -0.960 6.960 6 C -0.774 4.774 7 C -0.017 4.017 8 C -0.147 4.147 9 C -0.048 4.048 10 C -0.169 4.169 11 C 0.323 3.677 12 O -0.481 6.481 13 N -0.345 5.345 14 C 0.142 3.858 15 C -0.596 4.596 16 H 0.106 0.894 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.003 4.003 24 H 0.094 0.906 25 H 0.125 0.875 26 H 0.089 0.911 27 H 0.265 0.735 28 H 0.195 0.805 29 H 0.203 0.797 30 H 0.175 0.825 31 H 0.247 0.753 32 H 0.010 0.990 33 H 0.007 0.993 34 H 0.078 0.922 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.342 -0.664 -19.905 25.763 hybrid contribution 0.335 -0.042 1.831 1.861 sum -16.008 -0.706 -18.075 24.154 Atomic orbital electron populations 1.21845 0.76629 1.06314 1.02858 1.55064 1.17356 1.23474 1.91556 1.01042 0.71986 0.73015 0.73192 1.93575 1.33553 1.83927 1.87442 1.93559 1.79036 1.69586 1.53836 1.30926 1.08258 1.17750 1.20471 1.21631 0.91631 0.88759 0.99687 1.21740 1.01072 1.00794 0.91080 1.22037 0.90288 0.91479 1.00970 1.20041 0.99478 1.03875 0.93500 1.18935 0.84422 0.80238 0.84135 1.90720 1.32265 1.39607 1.85486 1.46100 1.32354 1.45922 1.10142 1.18642 0.89467 0.95274 0.82400 1.21565 1.14826 1.28171 0.95079 0.89433 1.26095 0.94688 0.96484 1.02311 1.70133 1.20875 1.39867 1.26064 0.85171 0.78481 0.78799 0.76546 1.18406 1.21244 1.18565 1.20901 0.95403 0.93646 0.90390 0.90579 0.87505 0.91128 0.73534 0.80454 0.79686 0.82502 0.75325 0.99036 0.99254 0.92167 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 11.13 127.77 1.42 1.94 16 2 N -1.11 -14.46 6.19 -206.53 -1.28 -15.74 16 3 S 2.72 56.58 5.74 -56.49 -0.32 56.26 16 4 O -0.99 -29.37 17.27 -128.00 -2.21 -31.58 16 5 O -0.97 -22.37 17.00 -128.00 -2.18 -24.55 16 6 C -0.69 -15.06 5.94 22.23 0.13 -14.92 16 7 C 0.00 0.03 9.52 22.33 0.21 0.24 16 8 C -0.13 -1.82 10.03 22.23 0.22 -1.60 16 9 C -0.03 -0.61 9.54 22.53 0.21 -0.40 16 10 C -0.16 -5.17 5.87 -20.09 -0.12 -5.29 16 11 C 0.53 22.88 7.77 86.79 0.67 23.55 16 12 O -0.60 -31.44 16.35 -3.87 -0.06 -31.51 16 13 N -0.70 -29.72 5.50 -469.70 -2.58 -32.31 16 14 C 0.26 14.56 5.43 85.63 0.46 15.03 16 15 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 16 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 19 Si 0.99 41.42 29.54 68.60 2.03 43.45 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 C 0.02 0.51 9.07 22.53 0.20 0.71 16 24 H 0.08 0.49 8.11 -2.39 -0.02 0.47 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.43 4.40 8.96 -96.74 -0.87 3.53 16 28 H 0.18 1.57 7.60 -2.91 -0.02 1.55 16 29 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.16 2.65 6.41 -2.91 -0.02 2.63 16 31 H 0.41 13.84 6.36 -92.71 -0.59 13.25 16 32 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 35 H 0.13 4.37 7.20 -2.91 -0.02 4.35 16 Total: -1.00 -84.52 322.40 -2.50 -87.03 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.31 Total: 14.29 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 4.13 Total: -9.72 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.58 Total: -103.68 kcal Atomic # 8 Polarization: -83.18 SS G_CDS: -4.45 Total: -87.64 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 56.58 SS G_CDS: -0.32 Total: 56.26 kcal Total: -84.52 -2.50 -87.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343897322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.724 kcal (2) G-P(sol) polarization free energy of solvation -84.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds