Wall clock time and date at job start Tue Mar 31 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00205 * 2 1 4 4 C 1.38017 * 123.47120 * 0.02562 * 3 2 1 5 5 C 1.33617 * 115.08734 * 179.72573 * 4 3 2 6 6 C 1.50696 * 124.42916 * 180.24786 * 5 4 3 7 7 S 1.70586 * 111.14433 * 0.25253 * 5 4 3 8 8 C 1.37275 * 123.46977 * 180.21572 * 3 2 1 9 9 C 1.41722 * 125.47910 * 359.97438 * 8 3 2 10 10 O 1.21775 * 119.99815 * 0.27064 * 9 8 3 11 11 N 1.34768 * 120.00441 * 180.27408 * 9 8 3 12 12 C 1.46495 * 120.00334 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47487 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99535 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00201 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99839 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00189 * 359.97438 * 16 15 13 18 18 C 1.38943 * 119.99972 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00013 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00261 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46842 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47679 * 119.99926 * 20 18 16 23 23 H 1.48500 * 109.47217 * 239.99941 * 20 18 16 24 24 H 1.08993 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46862 * 300.00158 * 1 2 3 26 26 H 1.09002 * 109.46643 * 59.99734 * 1 2 3 27 27 H 1.08002 * 122.46033 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.47384 * 90.00390 * 6 5 4 29 29 H 1.09006 * 109.46826 * 210.00295 * 6 5 4 30 30 H 1.08995 * 109.47104 * 330.00012 * 6 5 4 31 31 H 0.97005 * 119.99593 * 0.02562 * 11 9 8 32 32 H 1.08997 * 109.47615 * 300.00350 * 12 11 9 33 33 H 1.09000 * 109.47181 * 60.00228 * 12 11 9 34 34 H 0.97000 * 119.99935 * 0.02562 * 15 13 12 35 35 H 0.96999 * 120.00023 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 0.0005 5 6 2.1391 3.5000 0.0062 6 6 1.6191 4.9144 0.0133 7 16 3.7925 3.0804 0.0044 8 6 3.4095 1.3644 -0.0043 9 6 4.3568 0.3104 -0.0088 10 8 3.9794 -0.8474 -0.0140 11 7 5.6753 0.5892 -0.0072 12 6 6.6546 -0.5004 -0.0112 13 6 8.0472 0.0756 -0.0091 14 8 8.2060 1.2781 -0.0041 15 7 9.1160 -0.7453 -0.0126 16 6 10.3829 -0.2213 -0.0101 17 1 10.5244 0.8494 -0.0057 18 6 11.4848 -1.0676 -0.0144 19 7 11.3127 -2.3704 -0.0202 20 14 13.2110 -0.3536 -0.0117 21 1 13.1332 1.1294 -0.0055 22 1 13.9364 -0.8167 1.1984 23 1 13.9356 -0.8058 -1.2265 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2867 2.4660 0.0014 28 1 1.4935 5.2503 1.0426 29 1 2.3292 5.5651 -0.4972 30 1 0.6585 4.9510 -0.5006 31 1 5.9760 1.5115 -0.0026 32 1 6.5150 -1.1177 0.8761 33 1 6.5156 -1.1105 -0.9038 34 1 8.9889 -1.7070 -0.0170 35 1 12.0820 -2.9612 -0.0228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344121613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:31 Heat of formation + Delta-G solvation = -78.929487 kcal Electronic energy + Delta-G solvation = -20910.027069 eV Core-core repulsion = 17421.341709 eV Total energy + Delta-G solvation = -3488.685359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32512 -39.10309 -37.94572 -36.51386 -34.36117 -33.57463 -32.09810 -31.33308 -28.70599 -27.88935 -26.34578 -24.39614 -23.33757 -21.30065 -19.75465 -19.23424 -18.47123 -17.97718 -17.01636 -16.38685 -16.07982 -15.37766 -15.12173 -15.10240 -14.67090 -14.32079 -14.23536 -14.03650 -13.81852 -13.70224 -13.26981 -12.86691 -12.45691 -12.42050 -12.14860 -11.80911 -11.66824 -11.59896 -11.11640 -11.04890 -11.02780 -10.38182 -10.29279 -9.70126 -9.61334 -8.93337 -8.63359 -8.58580 -8.14662 -8.06264 -6.48048 -3.89875 0.38361 1.30043 1.65250 2.20358 3.12782 3.24478 3.30841 3.32782 3.51902 3.54400 3.79024 4.14929 4.30513 4.81210 4.86940 4.89362 4.93327 4.94520 5.12107 5.18093 5.20761 5.29147 5.45553 5.59240 5.63139 5.93365 6.04207 6.05727 6.12865 6.76194 7.12157 7.49589 7.89519 7.96167 8.48548 8.56552 9.08205 9.43380 9.91403 10.69032 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.003064 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.388638 B = 9135.064760 C =10103.701499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.271 6.271 3 C 0.189 3.811 4 C -0.221 4.221 5 C -0.170 4.170 6 C -0.088 4.088 7 S 0.241 5.759 8 C -0.322 4.322 9 C 0.591 3.409 10 O -0.532 6.532 11 N -0.710 5.710 12 C 0.111 3.889 13 C 0.429 3.571 14 O -0.597 6.597 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.281 1.281 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.405 0.595 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.406 10.104 0.082 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.128 3.872 4 C -0.254 4.254 5 C -0.290 4.290 6 C -0.146 4.146 7 S 0.507 5.493 8 C -0.442 4.442 9 C 0.379 3.621 10 O -0.411 6.411 11 N -0.365 5.365 12 C -0.016 4.016 13 C 0.215 3.785 14 O -0.484 6.484 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.165 0.835 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.243 0.757 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.943 10.515 0.083 22.545 hybrid contribution -0.692 -0.644 0.002 0.945 sum -20.635 9.871 0.084 22.875 Atomic orbital electron populations 1.23159 0.78622 1.04296 1.01125 1.86349 1.20630 1.24134 1.87091 1.18181 0.90132 0.85318 0.93529 1.19907 1.01722 0.90632 1.13177 1.24020 0.99668 1.00499 1.04827 1.20452 1.01780 0.89024 1.03373 1.83362 1.01843 0.95561 1.68507 1.22718 0.95306 0.98192 1.27961 1.15492 0.81457 0.87748 0.77387 1.90852 1.79691 1.19987 1.50579 1.45590 1.04774 1.10934 1.75229 1.20933 0.87679 0.89640 1.03372 1.19763 0.85755 0.87555 0.85433 1.90490 1.85822 1.14751 1.57295 1.41798 1.05030 1.08914 1.62717 1.19782 0.80998 0.94490 1.48031 0.87616 1.25323 1.00474 0.95104 0.96883 1.69627 1.32163 1.02214 1.49525 0.85760 0.81234 0.79309 0.77791 1.19128 1.20640 1.20646 0.87934 0.92702 0.92701 0.83487 0.90015 0.90597 0.90252 0.75692 0.89717 0.89720 0.77007 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.94 101.05 1.00 1.20 16 2 O -0.27 -3.88 9.36 -36.57 -0.34 -4.23 16 3 C 0.19 2.63 6.70 -40.01 -0.27 2.36 16 4 C -0.22 -2.27 9.02 -41.28 -0.37 -2.65 16 5 C -0.17 -1.62 6.27 -35.93 -0.23 -1.85 16 6 C -0.09 -0.52 10.31 36.00 0.37 -0.15 16 7 S 0.24 2.86 21.94 -107.50 -2.36 0.50 16 8 C -0.32 -5.02 6.28 -38.60 -0.24 -5.26 16 9 C 0.59 11.12 7.59 -14.93 -0.11 11.01 16 10 O -0.53 -11.47 15.84 -12.39 -0.20 -11.67 16 11 N -0.71 -13.40 5.51 -64.38 -0.36 -13.76 16 12 C 0.11 2.21 6.15 -5.19 -0.03 2.18 16 13 C 0.43 10.21 7.85 -10.98 -0.09 10.13 16 14 O -0.60 -15.69 15.24 5.54 0.08 -15.60 16 15 N -0.55 -13.96 5.29 -10.96 -0.06 -14.02 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 17 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -24.23 13.05 55.50 0.72 -23.51 16 20 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.37 7.88 -51.93 -0.41 -0.04 16 26 H 0.05 0.37 7.88 -51.93 -0.41 -0.04 16 27 H 0.15 1.08 6.99 -52.49 -0.37 0.72 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.41 7.48 6.41 -40.82 -0.26 7.21 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.40 9.68 7.90 -40.82 -0.32 9.36 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -33.97 323.78 -6.67 -40.63 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.82 Total: 12.02 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.20 Total: 9.02 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.31 Total: -51.28 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.45 Total: -31.50 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.36 Total: 0.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.97 -6.67 -40.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.297 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds