Wall clock time and date at job start Tue Mar 31 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00205 * 2 1 4 4 C 1.38017 * 123.47120 * 0.02562 * 3 2 1 5 5 C 1.33617 * 115.08734 * 179.72573 * 4 3 2 6 6 C 1.50696 * 124.42916 * 180.24786 * 5 4 3 7 7 S 1.70586 * 111.14433 * 0.25253 * 5 4 3 8 8 C 1.37275 * 123.46977 * 180.21572 * 3 2 1 9 9 C 1.41722 * 125.47910 * 359.97438 * 8 3 2 10 10 O 1.21775 * 119.99815 * 0.27064 * 9 8 3 11 11 N 1.34768 * 120.00441 * 180.27408 * 9 8 3 12 12 C 1.46495 * 120.00334 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47487 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99535 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00201 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99839 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00189 * 359.97438 * 16 15 13 18 18 C 1.38943 * 119.99972 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00013 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00261 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46842 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47679 * 119.99926 * 20 18 16 23 23 H 1.48500 * 109.47217 * 239.99941 * 20 18 16 24 24 H 1.08993 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46862 * 300.00158 * 1 2 3 26 26 H 1.09002 * 109.46643 * 59.99734 * 1 2 3 27 27 H 1.08002 * 122.46033 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.47384 * 90.00390 * 6 5 4 29 29 H 1.09006 * 109.46826 * 210.00295 * 6 5 4 30 30 H 1.08995 * 109.47104 * 330.00012 * 6 5 4 31 31 H 0.97005 * 119.99593 * 0.02562 * 11 9 8 32 32 H 1.08997 * 109.47615 * 300.00350 * 12 11 9 33 33 H 1.09000 * 109.47181 * 60.00228 * 12 11 9 34 34 H 0.97000 * 119.99935 * 0.02562 * 15 13 12 35 35 H 0.96999 * 120.00023 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 0.0005 5 6 2.1391 3.5000 0.0062 6 6 1.6191 4.9144 0.0133 7 16 3.7925 3.0804 0.0044 8 6 3.4095 1.3644 -0.0043 9 6 4.3568 0.3104 -0.0088 10 8 3.9794 -0.8474 -0.0140 11 7 5.6753 0.5892 -0.0072 12 6 6.6546 -0.5004 -0.0112 13 6 8.0472 0.0756 -0.0091 14 8 8.2060 1.2781 -0.0041 15 7 9.1160 -0.7453 -0.0126 16 6 10.3829 -0.2213 -0.0101 17 1 10.5244 0.8494 -0.0057 18 6 11.4848 -1.0676 -0.0144 19 7 11.3127 -2.3704 -0.0202 20 14 13.2110 -0.3536 -0.0117 21 1 13.1332 1.1294 -0.0055 22 1 13.9364 -0.8167 1.1984 23 1 13.9356 -0.8058 -1.2265 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2867 2.4660 0.0014 28 1 1.4935 5.2503 1.0426 29 1 2.3292 5.5651 -0.4972 30 1 0.6585 4.9510 -0.5006 31 1 5.9760 1.5115 -0.0026 32 1 6.5150 -1.1177 0.8761 33 1 6.5156 -1.1105 -0.9038 34 1 8.9889 -1.7070 -0.0170 35 1 12.0820 -2.9612 -0.0228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344121613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:30 Heat of formation + Delta-G solvation = -103.905993 kcal Electronic energy + Delta-G solvation = -20911.110131 eV Core-core repulsion = 17421.341709 eV Total energy + Delta-G solvation = -3489.768422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45156 -40.58931 -39.67647 -37.37632 -36.25573 -35.29325 -33.41019 -32.93116 -29.99135 -28.74494 -27.61697 -26.17854 -24.16145 -22.55488 -21.45104 -20.56221 -20.00157 -19.53539 -18.10715 -17.75948 -17.08740 -17.03658 -16.62823 -16.57458 -16.26646 -15.72518 -15.46406 -15.32181 -14.91266 -14.70847 -14.50898 -13.99742 -13.68432 -13.57207 -13.51444 -13.12763 -13.05454 -12.90656 -12.45127 -12.41673 -12.10544 -11.84803 -11.80369 -11.58979 -11.16618 -10.58554 -10.30766 -10.10538 -9.72695 -9.09848 -8.51608 -6.02135 -0.57126 0.37858 0.77654 1.27033 1.34904 1.42849 1.57452 1.87533 2.04794 2.20037 2.32913 2.48299 3.09489 3.15267 3.56675 3.95816 4.14395 4.20116 4.25824 4.35789 4.38939 4.39464 4.42678 4.63027 4.72729 4.74671 4.91157 5.07570 5.21139 5.23101 5.38092 5.90743 6.24614 6.43355 6.48783 7.02080 7.11764 7.42102 7.92163 8.65689 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.003064 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.388638 B = 9135.064760 C =10103.701499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.307 6.307 3 C 0.198 3.802 4 C -0.229 4.229 5 C -0.138 4.138 6 C -0.091 4.091 7 S 0.235 5.765 8 C -0.381 4.381 9 C 0.592 3.408 10 O -0.572 6.572 11 N -0.713 5.713 12 C 0.123 3.877 13 C 0.433 3.567 14 O -0.623 6.623 15 N -0.557 5.557 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.112 0.888 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.183 0.817 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.407 0.593 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.399 0.601 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.979 11.781 0.097 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.219 6.219 3 C 0.136 3.864 4 C -0.260 4.260 5 C -0.259 4.259 6 C -0.149 4.149 7 S 0.501 5.499 8 C -0.500 4.500 9 C 0.383 3.617 10 O -0.455 6.455 11 N -0.368 5.368 12 C -0.005 4.005 13 C 0.220 3.780 14 O -0.511 6.511 15 N -0.193 5.193 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.822 3.178 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.131 0.869 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.200 0.800 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.245 0.755 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.542 12.181 0.098 24.748 hybrid contribution -0.384 -1.112 0.000 1.176 sum -21.926 11.069 0.097 24.562 Atomic orbital electron populations 1.23514 0.75745 1.05777 1.03079 1.86298 1.23803 1.25124 1.86640 1.18600 0.89915 0.86439 0.91452 1.20141 1.03365 0.89082 1.13445 1.24557 0.97934 1.02317 1.01104 1.20690 1.02956 0.86337 1.04945 1.83318 1.04119 0.93261 1.69234 1.22588 0.95585 0.99284 1.32546 1.15897 0.81444 0.88194 0.76139 1.90805 1.80153 1.21734 1.52786 1.45594 1.04884 1.10561 1.75722 1.20772 0.85515 0.89980 1.04222 1.20328 0.86807 0.87114 0.83751 1.90462 1.86573 1.15979 1.58049 1.41837 1.05004 1.09141 1.63290 1.19801 0.82441 0.94021 1.50358 0.89467 1.26169 1.03932 0.95388 0.95696 1.69694 1.33597 1.03113 1.49257 0.84781 0.76312 0.78360 0.78332 1.19317 1.19568 1.19582 0.86922 0.90660 0.90666 0.79974 0.88239 0.89692 0.87845 0.75517 0.88817 0.88826 0.76694 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.94 113.37 1.13 1.32 16 2 O -0.31 -8.67 9.36 -74.35 -0.70 -9.37 16 3 C 0.20 5.36 6.70 21.99 0.15 5.51 16 4 C -0.23 -4.05 9.02 21.17 0.19 -3.86 16 5 C -0.14 -2.25 6.27 24.64 0.15 -2.09 16 6 C -0.09 -0.69 10.31 71.23 0.73 0.04 16 7 S 0.24 5.43 21.94 -56.49 -1.24 4.19 16 8 C -0.38 -12.06 6.28 22.90 0.14 -11.91 16 9 C 0.59 23.11 7.59 85.10 0.65 23.76 16 10 O -0.57 -25.70 15.84 12.16 0.19 -25.51 16 11 N -0.71 -27.87 5.51 -475.79 -2.62 -30.49 16 12 C 0.12 5.03 6.15 85.64 0.53 5.55 16 13 C 0.43 21.21 7.85 87.66 0.69 21.90 16 14 O -0.62 -33.66 15.24 -3.08 -0.05 -33.71 16 15 N -0.56 -29.09 5.29 -306.98 -1.62 -30.71 16 16 C -0.34 -19.00 9.68 84.04 0.81 -18.18 16 17 H 0.09 5.16 7.16 -2.91 -0.02 5.14 16 18 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 19 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 20 Si 1.00 42.35 29.55 68.60 2.03 44.38 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 0.79 7.88 -2.39 -0.02 0.77 16 26 H 0.07 0.79 7.88 -2.39 -0.02 0.77 16 27 H 0.18 1.85 6.99 -2.91 -0.02 1.83 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.41 15.59 6.41 -92.70 -0.59 14.99 16 32 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.09 3.66 8.14 -2.39 -0.02 3.65 16 34 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 35 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -75.42 323.78 1.74 -73.68 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.17 Total: 34.99 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 5.64 Total: 21.90 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.96 Total: -110.54 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -0.55 Total: -68.59 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.24 Total: 4.19 kcal Total: -75.42 1.74 -73.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.229 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds