Wall clock time and date at job start Tue Mar 31 2020 03:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47846 * 120.00003 * 180.02562 * 14 13 12 17 17 C 1.39601 * 120.14413 * 359.72515 * 16 14 13 18 18 C 1.37935 * 119.85388 * 179.74633 * 17 16 14 19 19 C 1.38388 * 120.14293 * 0.53136 * 18 17 16 20 20 C 1.38336 * 120.29208 * 359.74017 * 19 18 17 21 21 C 1.50697 * 119.92692 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47289 * 119.98312 * 21 20 19 23 23 F 1.39907 * 109.47361 * 239.98102 * 21 20 19 24 24 C 1.37981 * 120.14765 * 359.97438 * 20 19 18 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.08003 * 120.07015 * 0.02562 * 17 16 14 31 31 H 1.07999 * 119.93131 * 180.25358 * 18 17 16 32 32 H 1.07994 * 119.85229 * 179.76593 * 19 18 17 33 33 H 1.08998 * 109.47089 * 359.97438 * 21 20 19 34 34 H 1.07994 * 120.07788 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5517 -7.4692 -0.0018 16 6 2.7076 -8.3708 -0.0016 17 6 4.0807 -8.1191 -0.0073 18 6 4.9718 -9.1720 -0.0019 19 6 4.5072 -10.4756 -0.0020 20 6 3.1478 -10.7319 -0.0020 21 6 2.6510 -12.1546 -0.0027 22 9 1.8750 -12.3781 1.1397 23 9 1.8741 -12.3768 -1.1449 24 6 2.2457 -9.6878 -0.0015 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.1497 -5.7991 -0.0012 30 1 4.4445 -7.1022 -0.0113 31 1 6.0343 -8.9787 -0.0021 32 1 5.2090 -11.2964 -0.0016 33 1 3.5014 -12.8364 -0.0035 34 1 1.1847 -9.8891 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344121632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:22 Heat of formation + Delta-G solvation = -152.072421 kcal Electronic energy + Delta-G solvation = -22488.223996 eV Core-core repulsion = 18442.526535 eV Total energy + Delta-G solvation = -4045.697461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.26063 -47.24706 -40.33068 -38.81142 -37.97241 -34.60461 -33.83793 -32.49527 -31.52673 -31.38361 -27.95985 -26.35390 -24.88816 -23.59147 -22.20715 -20.37622 -19.72506 -18.53977 -17.98814 -17.63517 -17.47854 -16.60914 -16.46418 -15.86079 -15.47421 -15.37639 -14.67444 -14.55866 -14.29312 -14.21112 -13.99632 -13.98575 -13.61609 -13.48706 -13.12835 -12.89607 -12.41443 -12.23752 -11.98727 -11.78257 -11.67001 -11.25676 -11.15746 -10.49083 -10.35932 -9.95908 -9.67977 -9.48676 -9.35595 -8.88818 -8.69700 -8.14766 -6.55409 -3.97758 0.48459 0.85427 2.68155 3.08763 3.12964 3.20232 3.25799 3.38902 3.55859 3.69374 3.80030 4.07137 4.19272 4.49273 4.59643 4.72070 4.74909 4.82813 4.87610 5.11365 5.13041 5.29239 5.55012 5.80981 5.89389 5.90919 5.94970 5.96738 6.01384 6.39056 6.55073 7.42195 7.66138 7.87172 8.28020 8.40357 9.00110 9.34295 9.81657 10.61354 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.039086 B = 0.002532 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.194142 B =11057.479563 C =11593.878168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.554 3.446 15 O -0.541 6.541 16 C -0.128 4.128 17 C -0.063 4.063 18 C -0.128 4.128 19 C -0.064 4.064 20 C -0.184 4.184 21 C 0.316 3.684 22 F -0.198 7.198 23 F -0.198 7.198 24 C -0.022 4.022 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.410 0.590 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 -20.959 0.001 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.019 4.019 13 N -0.354 5.354 14 C 0.340 3.660 15 O -0.420 6.420 16 C -0.131 4.131 17 C -0.081 4.081 18 C -0.146 4.146 19 C -0.083 4.083 20 C -0.185 4.185 21 C 0.262 3.738 22 F -0.180 7.180 23 F -0.180 7.180 24 C -0.041 4.041 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.250 0.750 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.441 -20.892 0.005 22.177 hybrid contribution 0.075 1.010 -0.009 1.013 sum 7.516 -19.882 -0.004 21.255 Atomic orbital electron populations 1.69616 1.06036 1.28617 1.49084 1.25339 0.95675 0.99989 0.96687 0.85803 0.79224 0.80427 0.78521 1.20226 1.20761 1.19294 1.19731 0.93473 0.81955 1.48380 0.87630 1.41794 1.09527 1.04467 1.62352 1.19695 0.88270 0.84950 0.85818 1.90487 1.13688 1.86811 1.57610 1.21009 0.91798 0.85579 1.03562 1.45612 1.11766 1.04485 1.73525 1.18114 0.88042 0.82684 0.77142 1.90779 1.15993 1.84831 1.50374 1.19982 0.93679 0.93723 1.05708 1.21660 0.92075 1.00484 0.93920 1.21122 1.00421 0.91833 1.01181 1.21122 0.93735 0.97794 0.95626 1.20303 0.94962 0.94414 1.08800 1.20360 0.87461 0.94455 0.71497 1.93033 1.78072 1.95679 1.51174 1.93035 1.78034 1.95701 1.51192 1.21078 1.00724 0.90533 0.91738 0.91518 0.76977 0.89531 0.89532 0.75037 0.84354 0.84395 0.84801 0.86305 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 13.05 55.50 0.72 -22.92 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.31 -8.20 9.68 -14.94 -0.14 -8.34 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.36 5.29 -10.96 -0.06 -13.42 16 10 C 0.43 9.60 7.85 -10.98 -0.09 9.51 16 11 O -0.60 -14.92 15.24 5.55 0.08 -14.83 16 12 C 0.11 1.96 6.15 -5.19 -0.03 1.93 16 13 N -0.70 -11.55 5.48 -62.43 -0.34 -11.89 16 14 C 0.55 8.98 7.77 -12.33 -0.10 8.89 16 15 O -0.54 -10.34 16.35 5.32 0.09 -10.26 16 16 C -0.13 -1.67 5.87 -104.96 -0.62 -2.28 16 17 C -0.06 -0.65 9.54 -39.18 -0.37 -1.03 16 18 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 19 C -0.06 -0.47 9.66 -39.49 -0.38 -0.85 16 20 C -0.18 -1.74 5.37 -104.68 -0.56 -2.30 16 21 C 0.32 2.58 5.45 36.00 0.20 2.77 16 22 F -0.20 -2.06 17.25 2.25 0.04 -2.02 16 23 F -0.20 -2.06 17.25 2.25 0.04 -2.02 16 24 C -0.02 -0.27 9.14 -39.18 -0.36 -0.63 16 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.40 9.32 7.90 -40.82 -0.32 9.00 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.41 6.45 5.47 -40.82 -0.22 6.23 16 30 H 0.14 1.34 6.41 -52.48 -0.34 1.00 16 31 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.49 7.94 -52.49 -0.42 0.08 16 33 H 0.12 0.46 7.87 -51.93 -0.41 0.06 16 34 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 315.85 15.07 4.76 4.76 Total: -1.00 -32.11 315.85 -5.53 -37.64 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -2.89 Total: 12.85 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -2.95 Total: 6.85 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.32 Total: -48.23 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.11 -5.53 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.433 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds