Wall clock time and date at job start Tue Mar 31 2020 03:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47846 * 120.00003 * 180.02562 * 14 13 12 17 17 C 1.39601 * 120.14413 * 359.72515 * 16 14 13 18 18 C 1.37935 * 119.85388 * 179.74633 * 17 16 14 19 19 C 1.38388 * 120.14293 * 0.53136 * 18 17 16 20 20 C 1.38336 * 120.29208 * 359.74017 * 19 18 17 21 21 C 1.50697 * 119.92692 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47289 * 119.98312 * 21 20 19 23 23 F 1.39907 * 109.47361 * 239.98102 * 21 20 19 24 24 C 1.37981 * 120.14765 * 359.97438 * 20 19 18 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.08003 * 120.07015 * 0.02562 * 17 16 14 31 31 H 1.07999 * 119.93131 * 180.25358 * 18 17 16 32 32 H 1.07994 * 119.85229 * 179.76593 * 19 18 17 33 33 H 1.08998 * 109.47089 * 359.97438 * 21 20 19 34 34 H 1.07994 * 120.07788 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5517 -7.4692 -0.0018 16 6 2.7076 -8.3708 -0.0016 17 6 4.0807 -8.1191 -0.0073 18 6 4.9718 -9.1720 -0.0019 19 6 4.5072 -10.4756 -0.0020 20 6 3.1478 -10.7319 -0.0020 21 6 2.6510 -12.1546 -0.0027 22 9 1.8750 -12.3781 1.1397 23 9 1.8741 -12.3768 -1.1449 24 6 2.2457 -9.6878 -0.0015 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.1497 -5.7991 -0.0012 30 1 4.4445 -7.1022 -0.0113 31 1 6.0343 -8.9787 -0.0021 32 1 5.2090 -11.2964 -0.0016 33 1 3.5014 -12.8364 -0.0035 34 1 1.1847 -9.8891 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344121632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:21 Heat of formation + Delta-G solvation = -174.570610 kcal Electronic energy + Delta-G solvation = -22489.199591 eV Core-core repulsion = 18442.526535 eV Total energy + Delta-G solvation = -4046.673056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95358 -47.96410 -41.47229 -40.26009 -39.33541 -36.32384 -35.48739 -33.48739 -33.23609 -32.28570 -29.46526 -27.13849 -26.56677 -24.72154 -22.95362 -21.53220 -21.45250 -20.16391 -19.42716 -18.31105 -18.17700 -17.80759 -17.31221 -17.06401 -17.05038 -16.84025 -16.33308 -15.79322 -15.58924 -15.52621 -15.06263 -14.91368 -14.80478 -14.34825 -14.11283 -13.91180 -13.83448 -13.56137 -13.47087 -13.01993 -12.91898 -12.56197 -12.47344 -12.13203 -11.93046 -11.58833 -11.25344 -10.60231 -10.43761 -10.20637 -10.12687 -10.03925 -8.52829 -6.03420 -0.33078 0.07819 1.35324 1.42386 1.55015 1.65226 1.87050 1.87572 2.29255 2.64187 2.74987 3.06017 3.14349 3.26642 3.46247 3.67100 3.88228 4.04624 4.07544 4.13234 4.17083 4.34833 4.36180 4.42020 4.59419 4.80897 5.11536 5.14033 5.19876 5.25434 5.36689 5.70806 5.89108 6.35493 6.45622 6.98152 7.01282 7.40900 7.90360 8.64080 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.039086 B = 0.002532 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.194142 B =11057.479563 C =11593.878168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.119 3.881 13 N -0.699 5.699 14 C 0.554 3.446 15 O -0.579 6.579 16 C -0.154 4.154 17 C -0.068 4.068 18 C -0.120 4.120 19 C -0.042 4.042 20 C -0.189 4.189 21 C 0.310 3.690 22 F -0.215 7.215 23 F -0.215 7.215 24 C -0.043 4.043 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.415 0.585 30 H 0.141 0.859 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.163 -22.294 -0.011 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.009 4.009 13 N -0.353 5.353 14 C 0.343 3.657 15 O -0.461 6.461 16 C -0.157 4.157 17 C -0.087 4.087 18 C -0.138 4.138 19 C -0.059 4.059 20 C -0.190 4.190 21 C 0.257 3.743 22 F -0.197 7.197 23 F -0.197 7.197 24 C -0.063 4.063 25 H 0.090 0.910 26 H 0.233 0.767 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.255 0.745 30 H 0.158 0.842 31 H 0.192 0.808 32 H 0.203 0.797 33 H 0.193 0.807 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.917 -22.243 -0.008 24.353 hybrid contribution -0.636 1.309 -0.006 1.455 sum 9.281 -20.934 -0.014 22.899 Atomic orbital electron populations 1.69685 1.07085 1.29705 1.49186 1.26159 0.96534 1.02786 0.95701 0.84850 0.77938 0.76356 0.78744 1.19516 1.19720 1.19288 1.19757 0.93033 0.83431 1.50416 0.89364 1.41847 1.09624 1.04623 1.63226 1.20305 0.88113 0.85760 0.83785 1.90461 1.14974 1.87480 1.58119 1.20836 0.91696 0.83891 1.04456 1.45585 1.11623 1.04285 1.73832 1.18670 0.88229 0.83079 0.75757 1.90744 1.17780 1.85314 1.52228 1.19752 0.94196 0.92577 1.09196 1.21798 0.91174 1.01749 0.93941 1.21579 1.01691 0.91285 0.99211 1.21688 0.93218 0.99060 0.91981 1.20583 0.95768 0.94346 1.08331 1.20995 0.88292 0.94819 0.70218 1.92998 1.78808 1.95718 1.52135 1.93001 1.78773 1.95740 1.52153 1.21033 1.00337 0.91388 0.93497 0.91034 0.76706 0.88618 0.88619 0.74521 0.84155 0.80808 0.79748 0.80671 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 2 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 3 Si 1.00 41.34 29.55 68.60 2.03 43.37 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.40 9.68 84.04 0.81 -17.59 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -27.89 5.29 -306.98 -1.62 -29.52 16 10 C 0.43 19.86 7.85 87.66 0.69 20.55 16 11 O -0.62 -31.47 15.24 -3.07 -0.05 -31.52 16 12 C 0.12 4.41 6.15 85.63 0.53 4.94 16 13 N -0.70 -23.57 5.48 -469.70 -2.57 -26.15 16 14 C 0.55 18.65 7.77 86.79 0.67 19.33 16 15 O -0.58 -23.30 16.35 -3.88 -0.06 -23.36 16 16 C -0.15 -4.07 5.87 -20.09 -0.12 -4.19 16 17 C -0.07 -1.32 9.54 22.53 0.21 -1.10 16 18 C -0.12 -1.42 10.03 22.23 0.22 -1.20 16 19 C -0.04 -0.41 9.66 22.33 0.22 -0.19 16 20 C -0.19 -3.16 5.37 -19.90 -0.11 -3.27 16 21 C 0.31 4.28 5.45 71.24 0.39 4.67 16 22 F -0.22 -4.23 17.25 44.97 0.78 -3.45 16 23 F -0.22 -4.23 17.25 44.97 0.78 -3.46 16 24 C -0.04 -1.08 9.14 22.53 0.21 -0.88 16 25 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 27 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 29 H 0.41 13.23 5.47 -92.71 -0.51 12.72 16 30 H 0.14 2.58 6.41 -2.91 -0.02 2.57 16 31 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.19 0.00 7.94 -2.91 -0.02 -0.03 16 33 H 0.18 0.46 7.87 -2.39 -0.02 0.44 16 34 H 0.12 3.39 7.65 -2.91 -0.02 3.37 16 Total: -1.00 -72.38 315.85 3.69 -68.69 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.06 Total: 32.79 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 4.19 Total: 20.95 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.91 Total: -104.01 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -0.11 Total: -54.88 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 1.55 Total: -6.91 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -72.38 3.69 -68.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.881 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds