Wall clock time and date at job start Tue Mar 31 2020 03:51:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31406 * 1
3 3 Si 1.86798 * 119.99850 * 2 1
4 4 H 1.48508 * 109.47148 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1
6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1
7 7 C 1.38949 * 120.00039 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1
9 9 N 1.37095 * 120.00118 * 359.97438 * 7 2 1
10 10 C 1.34780 * 120.00438 * 179.97438 * 9 7 2
11 11 O 1.21295 * 119.99350 * 0.02562 * 10 9 7
12 12 C 1.50690 * 120.00144 * 180.02562 * 10 9 7
13 13 N 1.46506 * 109.47072 * 179.97438 * 12 10 9
14 14 C 1.34773 * 119.99968 * 179.97438 * 13 12 10
15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 12
16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 12
17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 13
18 18 C 1.38233 * 119.98719 * 264.72759 * 17 16 14
19 19 C 1.38183 * 120.05096 * 179.72972 * 18 17 16
20 20 C 1.38504 * 120.02493 * 0.54253 * 19 18 17
21 21 F 1.35094 * 120.01217 * 179.75332 * 20 19 18
22 22 C 1.38394 * 119.97307 * 359.73049 * 20 19 18
23 23 C 1.38442 * 119.94991 * 359.97438 * 22 20 19
24 24 F 1.35102 * 120.01369 * 179.97438 * 23 22 20
25 25 H 0.97003 * 120.00445 * 0.02562 * 1 2 3
26 26 H 0.97005 * 119.99993 * 0.02562 * 9 7 2
27 27 H 1.09004 * 109.47343 * 60.00501 * 12 10 9
28 28 H 1.08998 * 109.47656 * 300.00359 * 12 10 9
29 29 H 0.96998 * 119.99507 * 0.02562 * 13 12 10
30 30 H 1.09001 * 109.46564 * 299.73030 * 16 14 13
31 31 H 1.08998 * 109.47012 * 59.72084 * 16 14 13
32 32 H 1.07999 * 119.96908 * 359.97413 * 18 17 16
33 33 H 1.08000 * 119.99166 * 180.24810 * 19 18 17
34 34 H 1.07995 * 120.02349 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6177 0.0000
4 1 3.7081 1.3464 0.0006
5 1 1.8893 2.3964 -1.2125
6 1 1.8893 2.3965 1.2124
7 6 2.0088 -1.2033 0.0005
8 1 3.0888 -1.2033 0.0010
9 7 1.3234 -2.3906 0.0016
10 6 1.9972 -3.5579 0.0016
11 8 3.2102 -3.5578 0.0011
12 6 1.2437 -4.8629 0.0022
13 7 2.1957 -5.9765 0.0014
14 6 1.7465 -7.2471 0.0023
15 8 0.5541 -7.4688 0.0087
16 6 2.7258 -8.3926 0.0021
17 6 1.9723 -9.6977 0.0100
18 6 1.7273 -10.3468 1.2056
19 6 1.0316 -11.5407 1.2148
20 6 0.5888 -12.0941 0.0249
21 9 -0.0869 -13.2638 0.0338
22 6 0.8385 -11.4479 -1.1733
23 6 1.5302 -10.2487 -1.1807
24 9 1.7751 -9.6171 -2.3496
25 1 -0.4851 0.8400 -0.0004
26 1 0.3533 -2.3907 0.0016
27 1 0.6168 -4.9209 -0.8876
28 1 0.6173 -4.9205 0.8923
29 1 3.1494 -5.7991 0.0011
30 1 3.3486 -8.3379 -0.8907
31 1 3.3563 -8.3317 0.8891
32 1 2.0764 -9.9184 2.1335
33 1 0.8372 -12.0450 2.1499
34 1 0.4932 -11.8784 -2.1016
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344152543.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:51:45
Heat of formation + Delta-G solvation = -144.630334 kcal
Electronic energy + Delta-G solvation = -22534.683979 eV
Core-core repulsion = 18489.309231 eV
Total energy + Delta-G solvation = -4045.374748 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 298.092 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-49.26374 -49.18166 -39.98141 -38.86762 -38.03381 -34.49881 -33.70817 -32.95584
-31.41304 -31.08135 -28.66488 -26.71797 -24.46898 -23.49283 -22.33421 -20.25826
-19.61202 -18.47146 -18.14989 -17.51890 -17.27222 -16.41003 -16.14657 -15.92147
-15.56567 -15.41515 -15.34256 -15.09646 -14.65268 -14.47920 -14.22225 -14.04678
-13.87780 -13.37225 -13.09058 -12.38971 -12.24489 -12.15951 -12.03747 -11.81408
-11.66037 -11.59440 -11.16498 -10.43208 -10.35362 -9.89022 -9.67790 -9.32972
-8.87223 -8.86162 -8.66685 -8.13422 -6.54416 -3.96562 0.65255 0.75042
2.73316 2.96678 3.08194 3.20605 3.26786 3.44659 3.61171 3.70413
4.08948 4.13030 4.25612 4.29500 4.54964 4.80301 4.83898 4.97232
5.13086 5.15291 5.24538 5.51016 5.53519 5.66306 5.74458 5.87289
5.90902 5.93946 6.03296 6.47878 6.60859 7.43440 7.72472 7.88991
8.35868 8.42321 9.01619 9.36001 9.83531 10.62502
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.042583 B = 0.002431 C = 0.002418
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.381451 B =11513.224120 C =11575.921824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.025 3.975
3 Si 0.933 3.067
4 H -0.267 1.267
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.305 4.305
8 H 0.106 0.894
9 N -0.549 5.549
10 C 0.428 3.572
11 O -0.598 6.598
12 C 0.109 3.891
13 N -0.706 5.706
14 C 0.513 3.487
15 O -0.542 6.542
16 C -0.103 4.103
17 C -0.105 4.105
18 C -0.049 4.049
19 C -0.162 4.162
20 C 0.126 3.874
21 F -0.134 7.134
22 C -0.192 4.192
23 C 0.146 3.854
24 F -0.127 7.127
25 H 0.274 0.726
26 H 0.396 0.604
27 H 0.084 0.916
28 H 0.084 0.916
29 H 0.412 0.588
30 H 0.109 0.891
31 H 0.113 0.887
32 H 0.144 0.856
33 H 0.143 0.857
34 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.588 -21.252 1.245 21.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.178 4.178
3 Si 0.759 3.241
4 H -0.191 1.191
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.434 4.434
8 H 0.124 0.876
9 N -0.183 5.183
10 C 0.213 3.787
11 O -0.485 6.485
12 C -0.019 4.019
13 N -0.360 5.360
14 C 0.298 3.702
15 O -0.420 6.420
16 C -0.142 4.142
17 C -0.106 4.106
18 C -0.067 4.067
19 C -0.181 4.181
20 C 0.107 3.893
21 F -0.112 7.112
22 C -0.211 4.211
23 C 0.127 3.873
24 F -0.105 7.105
25 H 0.084 0.916
26 H 0.230 0.770
27 H 0.102 0.898
28 H 0.102 0.898
29 H 0.250 0.750
30 H 0.127 0.873
31 H 0.131 0.869
32 H 0.162 0.838
33 H 0.161 0.839
34 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 2.380 -21.216 1.197 21.382
hybrid contribution 0.004 0.907 -0.284 0.950
sum 2.384 -20.309 0.914 20.469
Atomic orbital electron populations
1.69619 1.06037 1.28478 1.49295 1.25337 0.95671 0.99983 0.96760
0.85753 0.79679 0.80778 0.77853 1.19113 1.20586 1.20594 1.19780
0.93490 0.81966 1.48193 0.87598 1.41812 1.09508 1.04509 1.62513
1.19733 0.88289 0.84986 0.85671 1.90496 1.13688 1.86826 1.57446
1.20959 0.91881 0.85756 1.03280 1.45680 1.11676 1.04535 1.74095
1.20307 0.89509 0.83631 0.76754 1.90718 1.16629 1.84800 1.49826
1.20585 0.97706 0.89571 1.06385 1.19429 1.02009 0.96929 0.92266
1.20768 0.95420 0.93211 0.97324 1.21154 1.01727 0.97784 0.97464
1.17285 0.95162 0.83071 0.93816 1.91524 1.77498 1.44861 1.97334
1.20973 1.04473 0.96573 0.99116 1.17087 0.97764 0.91132 0.81350
1.91540 1.91988 1.81302 1.45667 0.91599 0.77028 0.89841 0.89801
0.75025 0.87278 0.86920 0.83799 0.83941 0.83447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.73 13.05 55.50 0.72 -23.00 16
2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16
3 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16
4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16
8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16
9 N -0.55 -13.45 5.29 -10.97 -0.06 -13.50 16
10 C 0.43 9.61 7.85 -10.99 -0.09 9.52 16
11 O -0.60 -14.95 15.24 5.54 0.08 -14.86 16
12 C 0.11 1.96 6.15 -5.20 -0.03 1.92 16
13 N -0.71 -11.07 5.53 -61.47 -0.34 -11.41 16
14 C 0.51 7.52 7.82 -10.98 -0.09 7.43 16
15 O -0.54 -9.79 16.03 5.56 0.09 -9.70 16
16 C -0.10 -1.05 5.60 -29.03 -0.16 -1.21 16
17 C -0.10 -1.12 4.38 -104.55 -0.46 -1.58 16
18 C -0.05 -0.43 9.67 -39.60 -0.38 -0.82 16
19 C -0.16 -1.39 10.03 -39.50 -0.40 -1.79 16
20 C 0.13 1.24 7.30 -39.43 -0.29 0.95 16
21 F -0.13 -1.35 17.27 2.25 0.04 -1.31 16
22 C -0.19 -1.97 10.01 -39.45 -0.39 -2.36 16
23 C 0.15 1.69 7.24 -39.43 -0.29 1.41 16
24 F -0.13 -1.61 16.57 2.25 0.04 -1.57 16
25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16
26 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16
27 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16
28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16
29 H 0.41 6.20 7.44 -40.82 -0.30 5.90 16
30 H 0.11 0.98 7.79 -51.93 -0.40 0.58 16
31 H 0.11 0.81 8.05 -51.93 -0.42 0.39 16
32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16
33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16
34 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16
LS Contribution 318.18 15.07 4.79 4.79
Total: -1.00 -31.80 318.18 -5.54 -37.33
By element:
Atomic # 1 Polarization: 15.29 SS G_CDS: -3.07 Total: 12.22 kcal
Atomic # 6 Polarization: 8.52 SS G_CDS: -2.81 Total: 5.71 kcal
Atomic # 7 Polarization: -48.24 SS G_CDS: 0.33 Total: -47.92 kcal
Atomic # 8 Polarization: -24.74 SS G_CDS: 0.17 Total: -24.57 kcal
Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal
Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -31.80 -5.54 -37.33 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344152543.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -107.296 kcal
(2) G-P(sol) polarization free energy of solvation -31.797 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds