Wall clock time and date at job start Tue Mar 31 2020 03:51:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31406 * 1
3 3 Si 1.86798 * 119.99850 * 2 1
4 4 H 1.48508 * 109.47148 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1
6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1
7 7 C 1.38949 * 120.00039 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1
9 9 N 1.37095 * 120.00118 * 359.97438 * 7 2 1
10 10 C 1.34780 * 120.00438 * 179.97438 * 9 7 2
11 11 O 1.21295 * 119.99350 * 0.02562 * 10 9 7
12 12 C 1.50690 * 120.00144 * 180.02562 * 10 9 7
13 13 N 1.46506 * 109.47072 * 179.97438 * 12 10 9
14 14 C 1.34773 * 119.99968 * 179.97438 * 13 12 10
15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 12
16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 12
17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 13
18 18 C 1.38233 * 119.98719 * 264.72759 * 17 16 14
19 19 C 1.38183 * 120.05096 * 179.72972 * 18 17 16
20 20 C 1.38504 * 120.02493 * 0.54253 * 19 18 17
21 21 F 1.35094 * 120.01217 * 179.75332 * 20 19 18
22 22 C 1.38394 * 119.97307 * 359.73049 * 20 19 18
23 23 C 1.38442 * 119.94991 * 359.97438 * 22 20 19
24 24 F 1.35102 * 120.01369 * 179.97438 * 23 22 20
25 25 H 0.97003 * 120.00445 * 0.02562 * 1 2 3
26 26 H 0.97005 * 119.99993 * 0.02562 * 9 7 2
27 27 H 1.09004 * 109.47343 * 60.00501 * 12 10 9
28 28 H 1.08998 * 109.47656 * 300.00359 * 12 10 9
29 29 H 0.96998 * 119.99507 * 0.02562 * 13 12 10
30 30 H 1.09001 * 109.46564 * 299.73030 * 16 14 13
31 31 H 1.08998 * 109.47012 * 59.72084 * 16 14 13
32 32 H 1.07999 * 119.96908 * 359.97413 * 18 17 16
33 33 H 1.08000 * 119.99166 * 180.24810 * 19 18 17
34 34 H 1.07995 * 120.02349 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6177 0.0000
4 1 3.7081 1.3464 0.0006
5 1 1.8893 2.3964 -1.2125
6 1 1.8893 2.3965 1.2124
7 6 2.0088 -1.2033 0.0005
8 1 3.0888 -1.2033 0.0010
9 7 1.3234 -2.3906 0.0016
10 6 1.9972 -3.5579 0.0016
11 8 3.2102 -3.5578 0.0011
12 6 1.2437 -4.8629 0.0022
13 7 2.1957 -5.9765 0.0014
14 6 1.7465 -7.2471 0.0023
15 8 0.5541 -7.4688 0.0087
16 6 2.7258 -8.3926 0.0021
17 6 1.9723 -9.6977 0.0100
18 6 1.7273 -10.3468 1.2056
19 6 1.0316 -11.5407 1.2148
20 6 0.5888 -12.0941 0.0249
21 9 -0.0869 -13.2638 0.0338
22 6 0.8385 -11.4479 -1.1733
23 6 1.5302 -10.2487 -1.1807
24 9 1.7751 -9.6171 -2.3496
25 1 -0.4851 0.8400 -0.0004
26 1 0.3533 -2.3907 0.0016
27 1 0.6168 -4.9209 -0.8876
28 1 0.6173 -4.9205 0.8923
29 1 3.1494 -5.7991 0.0011
30 1 3.3486 -8.3379 -0.8907
31 1 3.3563 -8.3317 0.8891
32 1 2.0764 -9.9184 2.1335
33 1 0.8372 -12.0450 2.1499
34 1 0.4932 -11.8784 -2.1016
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344152543.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:51:44
Heat of formation + Delta-G solvation = -166.371729 kcal
Electronic energy + Delta-G solvation = -22535.626756 eV
Core-core repulsion = 18489.309231 eV
Total energy + Delta-G solvation = -4046.317526 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 298.092 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-50.06744 -50.01991 -41.14418 -40.15649 -39.38524 -36.25073 -35.27275 -33.80706
-33.36230 -31.80400 -29.91729 -27.96097 -26.23123 -24.22648 -23.20557 -21.42533
-21.35869 -20.07382 -19.25612 -18.59239 -18.30383 -17.44454 -17.25835 -16.91241
-16.85611 -16.67964 -16.39405 -16.28629 -16.12216 -15.61131 -15.57640 -15.39299
-14.81604 -14.73167 -14.02724 -13.92718 -13.62673 -13.55415 -12.99619 -12.93947
-12.88775 -12.72778 -12.44763 -12.33101 -12.11045 -11.58080 -11.10117 -10.56370
-10.20203 -10.08514 -10.06384 -9.64767 -8.51563 -6.01725 -0.11296 0.02330
1.35032 1.43152 1.57056 1.59306 1.90841 1.98742 2.28865 2.46859
2.85742 3.13578 3.15840 3.36599 3.50395 3.58315 3.88625 3.91037
4.11357 4.23577 4.39597 4.44704 4.46822 4.53612 4.79507 4.86097
4.93599 5.05010 5.21054 5.27769 5.38568 5.75448 5.91642 6.45451
6.54058 7.03296 7.17435 7.44296 7.93875 8.65626
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.042583 B = 0.002431 C = 0.002418
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.381451 B =11513.224120 C =11575.921824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.012 4.012
3 Si 0.997 3.003
4 H -0.269 1.269
5 H -0.272 1.272
6 H -0.271 1.271
7 C -0.335 4.335
8 H 0.087 0.913
9 N -0.561 5.561
10 C 0.433 3.567
11 O -0.623 6.623
12 C 0.121 3.879
13 N -0.706 5.706
14 C 0.514 3.486
15 O -0.578 6.578
16 C -0.095 4.095
17 C -0.117 4.117
18 C -0.047 4.047
19 C -0.155 4.155
20 C 0.116 3.884
21 F -0.137 7.137
22 C -0.199 4.199
23 C 0.121 3.879
24 F -0.140 7.140
25 H 0.280 0.720
26 H 0.398 0.602
27 H 0.089 0.911
28 H 0.095 0.905
29 H 0.416 0.584
30 H 0.121 0.879
31 H 0.150 0.850
32 H 0.173 0.827
33 H 0.169 0.831
34 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.153 -21.802 2.270 22.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.212 4.212
3 Si 0.820 3.180
4 H -0.193 1.193
5 H -0.197 1.197
6 H -0.196 1.196
7 C -0.465 4.465
8 H 0.105 0.895
9 N -0.197 5.197
10 C 0.221 3.779
11 O -0.511 6.511
12 C -0.007 4.007
13 N -0.361 5.361
14 C 0.302 3.698
15 O -0.457 6.457
16 C -0.134 4.134
17 C -0.119 4.119
18 C -0.065 4.065
19 C -0.174 4.174
20 C 0.096 3.904
21 F -0.116 7.116
22 C -0.219 4.219
23 C 0.102 3.898
24 F -0.119 7.119
25 H 0.089 0.911
26 H 0.232 0.768
27 H 0.107 0.893
28 H 0.113 0.887
29 H 0.255 0.745
30 H 0.139 0.861
31 H 0.167 0.833
32 H 0.191 0.809
33 H 0.187 0.813
34 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 2.946 -21.790 2.221 22.100
hybrid contribution -0.188 0.971 -0.591 1.152
sum 2.758 -20.820 1.630 21.065
Atomic orbital electron populations
1.69684 1.07046 1.29573 1.49449 1.26137 0.96527 1.02737 0.95833
0.84810 0.78178 0.76719 0.78275 1.19326 1.19742 1.19631 1.19774
0.92968 0.83515 1.50209 0.89492 1.41875 1.09598 1.04701 1.63480
1.20431 0.88140 0.85902 0.83469 1.90473 1.15077 1.87544 1.57963
1.20749 0.91821 0.84072 1.04042 1.45710 1.11429 1.04452 1.74495
1.21057 0.89798 0.83855 0.75138 1.90705 1.18492 1.85199 1.51336
1.20645 0.96828 0.87184 1.08768 1.19631 1.02394 0.97250 0.92592
1.21141 0.94633 0.92967 0.97723 1.21498 1.00397 0.97534 0.97974
1.17468 0.95510 0.83121 0.94276 1.91515 1.77632 1.45051 1.97365
1.21109 1.04385 0.96455 0.99928 1.17376 0.99126 0.91914 0.81423
1.91498 1.92278 1.81637 1.46477 0.91090 0.76765 0.89318 0.88713
0.74527 0.86051 0.83256 0.80916 0.81311 0.82722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16
2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16
3 Si 1.00 41.35 29.55 68.60 2.03 43.38 16
4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16
6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16
7 C -0.34 -18.26 9.68 84.04 0.81 -17.44 16
8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16
9 N -0.56 -27.80 5.29 -306.99 -1.62 -29.42 16
10 C 0.43 19.49 7.85 87.65 0.69 20.18 16
11 O -0.62 -31.19 15.24 -3.08 -0.05 -31.24 16
12 C 0.12 4.27 6.15 85.63 0.53 4.79 16
13 N -0.71 -21.24 5.53 -466.79 -2.58 -23.82 16
14 C 0.51 14.24 7.82 87.66 0.69 14.92 16
15 O -0.58 -20.26 16.03 -3.04 -0.05 -20.31 16
16 C -0.10 -1.71 5.60 29.10 0.16 -1.54 16
17 C -0.12 -2.28 4.38 -19.82 -0.09 -2.37 16
18 C -0.05 -0.69 9.67 22.26 0.22 -0.48 16
19 C -0.16 -2.26 10.03 22.32 0.22 -2.04 16
20 C 0.12 2.12 7.30 22.37 0.16 2.29 16
21 F -0.14 -2.61 17.27 44.97 0.78 -1.84 16
22 C -0.20 -3.99 10.01 22.36 0.22 -3.77 16
23 C 0.12 2.72 7.24 22.37 0.16 2.88 16
24 F -0.14 -3.57 16.57 44.97 0.74 -2.83 16
25 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16
26 H 0.40 19.05 7.90 -92.70 -0.73 18.31 16
27 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16
28 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16
29 H 0.42 11.96 7.44 -92.71 -0.69 11.27 16
30 H 0.12 1.92 7.79 -2.39 -0.02 1.90 16
31 H 0.15 1.57 8.05 -2.39 -0.02 1.55 16
32 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16
33 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16
34 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16
Total: -1.00 -68.44 318.18 3.54 -64.90
By element:
Atomic # 1 Polarization: 32.34 SS G_CDS: -0.24 Total: 32.10 kcal
Atomic # 6 Polarization: 13.04 SS G_CDS: 4.25 Total: 17.29 kcal
Atomic # 7 Polarization: -97.54 SS G_CDS: -3.92 Total: -101.46 kcal
Atomic # 8 Polarization: -51.45 SS G_CDS: -0.10 Total: -51.54 kcal
Atomic # 9 Polarization: -6.18 SS G_CDS: 1.52 Total: -4.66 kcal
Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal
Total: -68.44 3.54 -64.90 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344152543.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.470 kcal
(2) G-P(sol) polarization free energy of solvation -68.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds