Wall clock time and date at job start Tue Mar 31 2020 03:51:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99639 * 2 1
4 4 H 1.48503 * 109.47559 * 240.00523 * 3 2 1
5 5 H 1.48510 * 109.47236 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.47109 * 120.00254 * 3 2 1
7 7 C 1.37868 * 120.00166 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99985 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00188 * 359.97438 * 7 2 1
10 10 N 1.46505 * 109.47323 * 180.02562 * 9 7 2
11 11 C 1.34768 * 120.00022 * 179.97438 * 10 9 7
12 12 O 1.21284 * 120.00184 * 0.02562 * 11 10 9
13 13 C 1.50699 * 119.99944 * 180.02562 * 11 10 9
14 14 N 1.46500 * 109.47334 * 180.02562 * 13 11 10
15 15 C 1.34778 * 120.00282 * 180.02562 * 14 13 11
16 16 O 1.21569 * 119.99855 * 359.97438 * 15 14 13
17 17 C 1.47727 * 120.00078 * 179.97438 * 15 14 13
18 18 C 1.39647 * 120.11028 * 359.97438 * 17 15 14
19 19 C 1.37851 * 119.92659 * 179.97438 * 18 17 15
20 20 C 1.38611 * 120.14691 * 0.03052 * 19 18 17
21 21 F 1.35101 * 119.88748 * 180.27396 * 20 19 18
22 22 C 1.38835 * 120.21757 * 359.97438 * 20 19 18
23 23 F 1.35098 * 119.96034 * 180.02562 * 22 20 19
24 24 C 1.38050 * 120.07440 * 359.97438 * 22 20 19
25 25 H 0.96992 * 120.00136 * 359.97438 * 1 2 3
26 26 H 1.09000 * 109.47003 * 60.00055 * 9 7 2
27 27 H 1.08997 * 109.47365 * 300.00323 * 9 7 2
28 28 H 0.96998 * 119.99328 * 0.02562 * 10 9 7
29 29 H 1.09000 * 109.47325 * 59.99996 * 13 11 10
30 30 H 1.08996 * 109.47382 * 299.99996 * 13 11 10
31 31 H 0.97005 * 119.99996 * 359.97438 * 14 13 11
32 32 H 1.08008 * 120.03867 * 0.04325 * 18 17 15
33 33 H 1.08000 * 119.92705 * 180.02562 * 19 18 17
34 34 H 1.08002 * 120.07427 * 180.02562 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6967 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 7 2.2032 -3.6126 -0.0005
11 6 1.7540 -4.8832 0.0000
12 8 0.5616 -5.1049 0.0000
13 6 2.7334 -6.0286 0.0006
14 7 2.0010 -7.2974 0.0005
15 6 2.6749 -8.4646 0.0014
16 8 3.8906 -8.4645 0.0019
17 6 1.9363 -9.7440 0.0019
18 6 0.5398 -9.7467 0.0018
19 6 -0.1455 -10.9428 0.0017
20 6 0.5483 -12.1427 0.0023
21 9 -0.1286 -13.3119 -0.0034
22 6 1.9367 -12.1471 0.0024
23 9 2.6077 -13.3196 0.0025
24 6 2.6322 -10.9546 0.0015
25 1 -0.4850 0.8400 0.0004
26 1 0.6242 -2.5567 -0.8903
27 1 0.6248 -2.5571 0.8896
28 1 3.1569 -3.4352 -0.0002
29 1 3.3600 -5.9705 0.8906
30 1 3.3601 -5.9713 -0.8893
31 1 1.0309 -7.2975 0.0004
32 1 -0.0027 -8.8128 0.0008
33 1 -1.2255 -10.9449 0.0013
34 1 3.7122 -10.9579 0.0012
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344205452.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:51:19
Heat of formation + Delta-G solvation = -162.990245 kcal
Electronic energy + Delta-G solvation = -22185.554361 eV
Core-core repulsion = 18139.383467 eV
Total energy + Delta-G solvation = -4046.170894 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 298.092 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-50.64347 -49.71889 -41.53413 -40.46002 -39.11474 -36.32736 -35.60651 -34.38164
-32.30045 -32.00614 -30.11257 -28.15381 -25.23888 -24.35157 -24.19535 -21.80577
-21.59357 -20.05392 -18.98093 -18.62860 -18.28766 -17.69328 -17.49569 -17.35415
-16.97704 -16.88215 -16.57867 -16.12942 -15.94526 -15.86565 -15.63620 -15.16982
-14.92135 -14.37247 -14.35723 -14.16086 -13.92628 -13.77145 -13.49272 -13.09489
-12.95154 -12.67208 -12.48358 -12.23833 -11.50739 -11.34464 -10.95130 -10.78693
-10.42092 -10.27086 -9.95121 -9.85424 -8.28194 -6.43802 -0.68385 -0.16757
1.45308 1.45519 1.48299 1.56221 1.61632 1.70712 2.35058 2.41720
2.55324 2.61822 3.07404 3.15807 3.36484 3.45373 3.75574 3.80235
3.88738 4.33476 4.34687 4.51092 4.57837 4.72373 4.81655 4.92724
5.04634 5.16382 5.26670 5.45579 5.49286 5.65119 5.85525 6.31685
6.65915 6.77969 6.97402 7.22831 7.38119 8.83319
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.043774 B = 0.002269 C = 0.002161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 639.492930 B =12334.950906 C =12953.996808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.006 3.994
3 Si 0.980 3.020
4 H -0.263 1.263
5 H -0.287 1.287
6 H -0.263 1.263
7 C -0.557 4.557
8 H 0.084 0.916
9 C 0.266 3.734
10 N -0.700 5.700
11 C 0.496 3.504
12 O -0.589 6.589
13 C 0.111 3.889
14 N -0.704 5.704
15 C 0.566 3.434
16 O -0.564 6.564
17 C -0.122 4.122
18 C -0.053 4.053
19 C -0.117 4.117
20 C 0.089 3.911
21 F -0.129 7.129
22 C 0.049 3.951
23 F -0.133 7.133
24 C -0.067 4.067
25 H 0.269 0.731
26 H -0.006 1.006
27 H -0.006 1.006
28 H 0.412 0.588
29 H 0.118 0.882
30 H 0.118 0.882
31 H 0.417 0.583
32 H 0.167 0.833
33 H 0.185 0.815
34 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.312 -21.491 0.004 21.745
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.194 4.194
3 Si 0.804 3.196
4 H -0.188 1.188
5 H -0.213 1.213
6 H -0.188 1.188
7 C -0.595 4.595
8 H 0.102 0.898
9 C 0.143 3.857
10 N -0.350 5.350
11 C 0.283 3.717
12 O -0.471 6.471
13 C -0.016 4.016
14 N -0.359 5.359
15 C 0.354 3.646
16 O -0.444 6.444
17 C -0.125 4.125
18 C -0.072 4.072
19 C -0.135 4.135
20 C 0.068 3.932
21 F -0.107 7.107
22 C 0.029 3.971
23 F -0.112 7.112
24 C -0.086 4.086
25 H 0.077 0.923
26 H 0.012 0.988
27 H 0.012 0.988
28 H 0.248 0.752
29 H 0.136 0.864
30 H 0.135 0.865
31 H 0.257 0.743
32 H 0.184 0.816
33 H 0.202 0.798
34 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 3.170 -21.556 0.003 21.788
hybrid contribution 0.035 0.536 0.002 0.537
sum 3.205 -21.020 0.005 21.263
Atomic orbital electron populations
1.70106 1.08095 1.28594 1.49951 1.25983 0.95738 1.03680 0.93967
0.85275 0.77959 0.76984 0.79425 1.18798 1.21272 1.18808 1.21603
0.94382 0.90673 1.52871 0.89825 1.18597 0.88560 0.83838 0.94663
1.46111 1.11667 1.05286 1.71906 1.20979 0.89520 0.85051 0.76185
1.90634 1.18524 1.85096 1.52808 1.21110 0.93178 0.80725 1.06605
1.45589 1.11911 1.04241 1.74133 1.18137 0.86753 0.83691 0.76029
1.90797 1.14363 1.87873 1.51350 1.19638 0.94280 0.92122 1.06485
1.21581 0.91963 0.99824 0.93813 1.21343 1.03145 0.88572 1.00442
1.18148 0.88106 0.83177 1.03752 1.91551 1.79651 1.45938 1.93592
1.17562 0.88708 0.82285 1.08537 1.91535 1.80214 1.45204 1.94254
1.21113 1.02226 0.88852 0.96458 0.92266 0.98787 0.98798 0.75213
0.86449 0.86455 0.74336 0.81562 0.79791 0.82376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.74 13.29 21.44 0.28 -53.46 16
2 C 0.01 0.33 5.46 84.65 0.46 0.79 16
3 Si 0.98 40.77 29.54 68.60 2.03 42.79 16
4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16
6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
7 C -0.56 -28.65 9.28 25.60 0.24 -28.41 16
8 H 0.08 3.87 7.60 -2.91 -0.02 3.85 16
9 C 0.27 13.46 5.43 85.63 0.46 13.92 16
10 N -0.70 -26.13 5.55 -466.79 -2.59 -28.72 16
11 C 0.50 16.74 7.90 87.66 0.69 17.43 16
12 O -0.59 -24.07 15.67 -3.04 -0.05 -24.12 16
13 C 0.11 2.62 6.15 85.63 0.53 3.15 16
14 N -0.70 -15.61 5.48 -469.82 -2.57 -18.18 16
15 C 0.57 12.76 7.77 86.75 0.67 13.43 16
16 O -0.56 -15.97 16.34 -3.93 -0.06 -16.04 16
17 C -0.12 -2.16 5.87 -20.09 -0.12 -2.28 16
18 C -0.05 -0.68 9.53 22.52 0.21 -0.47 16
19 C -0.12 -1.32 10.01 22.27 0.22 -1.10 16
20 C 0.09 1.41 7.31 22.50 0.16 1.57 16
21 F -0.13 -2.29 17.17 44.97 0.77 -1.51 16
22 C 0.05 0.89 7.30 22.37 0.16 1.05 16
23 F -0.13 -2.73 17.18 44.97 0.77 -1.96 16
24 C -0.07 -1.20 9.57 22.56 0.22 -0.99 16
25 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16
26 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16
27 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
28 H 0.41 12.52 8.32 -92.71 -0.77 11.75 16
29 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16
30 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16
31 H 0.42 8.71 5.46 -92.70 -0.51 8.20 16
32 H 0.17 1.61 6.40 -2.91 -0.02 1.59 16
33 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16
34 H 0.16 2.86 7.65 -2.91 -0.02 2.83 16
Total: -1.00 -68.96 317.47 2.41 -66.55
By element:
Atomic # 1 Polarization: 16.63 SS G_CDS: -0.09 Total: 16.54 kcal
Atomic # 6 Polarization: 14.19 SS G_CDS: 3.92 Total: 18.11 kcal
Atomic # 7 Polarization: -95.49 SS G_CDS: -4.88 Total: -100.37 kcal
Atomic # 8 Polarization: -40.04 SS G_CDS: -0.11 Total: -40.15 kcal
Atomic # 9 Polarization: -5.02 SS G_CDS: 1.54 Total: -3.47 kcal
Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal
Total: -68.96 2.41 -66.55 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344205452.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.437 kcal
(2) G-P(sol) polarization free energy of solvation -68.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.553 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds