Wall clock time and date at job start Tue Mar 31 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 S 1.76205 * 120.00126 * 180.26088 * 6 5 4 8 8 O 1.42105 * 106.40035 * 23.75208 * 7 6 5 9 9 O 1.42097 * 106.40122 * 156.67596 * 7 6 5 10 10 N 1.65602 * 107.21590 * 270.21445 * 7 6 5 11 11 C 1.46506 * 120.00166 * 64.99795 * 10 7 6 12 12 C 1.50696 * 109.47083 * 165.00215 * 11 10 7 13 13 O 1.21293 * 120.00029 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99767 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99994 * 179.97438 * 14 12 11 16 16 H 1.08009 * 119.99886 * 359.97438 * 15 14 12 17 17 C 1.38945 * 119.99963 * 179.97438 * 15 14 12 18 18 N 1.31404 * 120.00524 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99857 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47284 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47191 * 119.99930 * 19 17 15 22 22 H 1.48497 * 109.47296 * 240.00352 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 0.97002 * 120.00147 * 245.00129 * 10 7 6 31 31 H 1.08999 * 109.47140 * 285.00074 * 11 10 7 32 32 H 1.08999 * 109.46837 * 44.99571 * 11 10 7 33 33 H 0.96993 * 120.00318 * 359.97438 * 14 12 11 34 34 H 0.96999 * 120.00571 * 180.02562 * 18 17 15 35 35 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 16 4.4616 -2.7230 -0.0006 8 8 5.7446 -2.4457 0.5439 9 8 3.5799 -3.6953 0.5438 10 7 4.7067 -3.1474 -1.5824 11 6 5.5549 -2.3167 -2.4408 12 6 5.9152 -3.0853 -3.6859 13 8 5.5044 -4.2159 -3.8408 14 7 6.6949 -2.5167 -4.6268 15 6 7.0231 -3.2161 -5.7594 16 1 6.6573 -4.2229 -5.8974 17 6 7.8264 -2.6297 -6.7296 18 7 8.2711 -1.4045 -6.5621 19 14 8.2743 -3.5829 -8.2724 20 1 7.6526 -4.9305 -8.2196 21 1 7.7765 -2.8540 -9.4666 22 1 9.7503 -3.7223 -8.3572 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 4.2887 -3.9461 -1.9407 31 1 5.0158 -1.4104 -2.7165 32 1 6.4644 -2.0489 -1.9030 33 1 7.0237 -1.6126 -4.5027 34 1 8.8316 -0.9950 -7.2396 35 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352528316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:21 Heat of formation + Delta-G solvation = -91.556013 kcal Electronic energy + Delta-G solvation = -21384.647391 eV Core-core repulsion = 17895.414505 eV Total energy + Delta-G solvation = -3489.232886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52168 -38.44874 -37.15651 -35.78210 -34.66927 -33.72071 -33.13780 -31.44256 -31.36568 -27.29828 -27.13819 -24.34574 -23.47617 -22.02363 -19.68495 -19.31073 -18.14553 -17.80366 -17.40264 -16.29262 -16.14293 -15.57470 -15.44713 -14.80078 -14.50035 -14.44603 -14.26765 -14.09184 -13.65878 -13.44568 -12.60431 -12.56433 -12.50454 -12.39000 -12.28199 -12.01909 -11.93930 -11.89954 -11.55183 -11.45065 -11.15819 -10.81120 -10.40683 -10.31733 -9.65600 -9.57716 -9.38269 -9.01757 -8.61129 -8.10100 -6.52040 -3.93604 0.38463 0.69069 1.06567 3.00171 3.10262 3.22712 3.29451 3.34800 3.72214 3.83790 4.09537 4.26951 4.53970 4.63795 4.75068 4.83825 4.99466 5.02471 5.15135 5.25659 5.31661 5.42919 5.47021 5.62829 5.74893 5.80503 5.81812 5.89144 6.03044 6.17434 6.26566 6.62472 7.24800 7.46407 7.93492 8.45775 9.05350 9.39108 9.87718 10.65078 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.020235 B = 0.003667 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.438172 B = 7634.353284 C = 8158.919213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.026 4.026 6 C -0.670 4.670 7 S 2.700 3.300 8 O -0.957 6.957 9 O -0.961 6.961 10 N -1.096 6.096 11 C 0.106 3.894 12 C 0.435 3.565 13 O -0.589 6.589 14 N -0.553 5.553 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.896 5.896 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.020 4.020 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.428 0.572 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.395 0.605 34 H 0.273 0.727 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.428 8.188 12.165 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.086 4.086 4 C -0.155 4.155 5 C -0.045 4.045 6 C -0.757 4.757 7 S 2.788 3.212 8 O -0.947 6.947 9 O -0.951 6.951 10 N -0.861 5.861 11 C -0.025 4.025 12 C 0.219 3.781 13 O -0.474 6.474 14 N -0.188 5.188 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.039 4.039 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.220 7.247 12.715 18.441 hybrid contribution -0.009 0.633 -1.250 1.401 sum -11.229 7.880 11.466 17.879 Atomic orbital electron populations 1.20822 0.90480 1.03128 1.02805 1.20062 0.96604 0.93145 1.01277 1.21362 0.94494 0.97755 0.95003 1.21303 0.94415 0.98396 1.01400 1.21006 1.00503 0.91133 0.91897 1.31081 1.06404 1.20610 1.17576 1.01680 0.73805 0.73357 0.72315 1.93585 1.39149 1.85504 1.76490 1.93577 1.66933 1.58293 1.76330 1.55089 1.62744 1.38002 1.30222 1.20955 0.95133 0.93381 0.93011 1.19598 0.84859 0.88202 0.85411 1.90511 1.58241 1.19384 1.79278 1.41816 1.43235 1.16484 1.17280 1.19790 1.28531 1.00047 0.94913 0.87619 1.25301 0.96604 0.96063 0.99748 1.69609 1.34815 1.13192 1.36073 0.85766 0.78251 0.79624 0.80500 1.19131 1.20665 1.20624 1.20831 0.91953 0.98859 0.92247 0.90758 0.91096 0.91348 0.85363 0.84900 0.83981 0.73311 0.90254 0.88663 0.77126 0.91694 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.11 -1.09 5.88 -104.62 -0.62 -1.71 16 3 C -0.07 -0.62 9.70 -39.58 -0.38 -1.00 16 4 C -0.14 -1.31 10.05 -39.58 -0.40 -1.71 16 5 C -0.03 -0.30 9.52 -39.58 -0.38 -0.68 16 6 C -0.67 -8.44 5.95 -39.59 -0.24 -8.67 16 7 S 2.70 39.37 5.74 -107.50 -0.62 38.76 16 8 O -0.96 -16.03 16.76 -57.17 -0.96 -16.99 16 9 O -0.96 -15.80 17.28 -57.17 -0.99 -16.78 16 10 N -1.10 -17.28 5.93 -11.65 -0.07 -17.35 16 11 C 0.11 1.76 6.70 -5.19 -0.03 1.73 16 12 C 0.44 9.80 7.85 -10.99 -0.09 9.71 16 13 O -0.59 -15.18 15.30 5.55 0.08 -15.09 16 14 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 15 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 16 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -23.50 13.05 55.50 0.72 -22.77 16 19 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 C -0.02 -0.23 9.18 -39.58 -0.36 -0.59 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 27 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.14 1.46 7.62 -52.48 -0.40 1.06 16 30 H 0.43 7.03 7.70 -34.47 -0.27 6.76 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 1.45 7.75 -51.93 -0.40 1.05 16 33 H 0.40 9.01 7.90 -40.82 -0.32 8.69 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.14 1.48 7.62 -52.49 -0.40 1.08 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -33.75 322.88 -8.24 -42.00 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -3.83 Total: 12.56 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.37 Total: -11.12 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.60 Total: -53.56 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -1.86 Total: -48.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 39.37 SS G_CDS: -0.62 Total: 38.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.75 -8.24 -42.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352528316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.561 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds