Wall clock time and date at job start Tue Mar 31 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40087 * 126.03293 * 2 1 4 4 C 1.30832 * 108.20361 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.20148 * 359.77910 * 4 3 2 6 6 C 1.34946 * 126.03806 * 180.02562 * 2 1 3 7 7 S 1.76194 * 126.12817 * 359.94104 * 6 2 1 8 8 O 1.42103 * 106.40239 * 93.30548 * 7 6 2 9 9 O 1.42101 * 106.40423 * 320.38940 * 7 6 2 10 10 N 1.65599 * 107.21947 * 206.84862 * 7 6 2 11 11 C 1.46498 * 119.99593 * 266.20203 * 10 7 6 12 12 C 1.50702 * 109.47189 * 113.55197 * 11 10 7 13 13 H 1.07998 * 119.99910 * 358.07084 * 12 11 10 14 14 C 1.37881 * 120.00460 * 178.07856 * 12 11 10 15 15 N 1.31513 * 119.99475 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00346 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47245 * 89.99426 * 16 14 12 18 18 H 1.48496 * 109.47312 * 210.00016 * 16 14 12 19 19 H 1.48504 * 109.47120 * 329.99548 * 16 14 12 20 20 C 1.46496 * 120.00374 * 86.20071 * 10 7 6 21 21 C 1.53003 * 109.47127 * 94.70628 * 20 10 7 22 22 C 1.47194 * 109.47036 * 184.67714 * 21 20 10 23 23 N 7.41850 * 94.98633 * 135.69483 * 2 1 3 24 24 H 1.09001 * 109.47134 * 269.97680 * 1 2 3 25 25 H 1.08996 * 109.47372 * 29.97663 * 1 2 3 26 26 H 1.09006 * 109.47037 * 149.97414 * 1 2 3 27 27 H 1.07995 * 125.89921 * 180.02562 * 4 3 2 28 28 H 1.08003 * 126.03870 * 180.23009 * 5 4 3 29 29 H 1.09002 * 109.47206 * 233.54796 * 11 10 7 30 30 H 1.08994 * 109.47971 * 353.54827 * 11 10 7 31 31 H 0.97004 * 120.00075 * 180.02562 * 15 14 12 32 32 H 1.08993 * 109.47278 * 214.71478 * 20 10 7 33 33 H 1.09005 * 109.46863 * 334.71073 * 20 10 7 34 34 H 1.08993 * 109.47048 * 304.67830 * 21 20 10 35 35 H 1.09004 * 109.46445 * 64.68138 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 3.5437 -0.6664 0.0042 6 6 2.2589 -1.0912 -0.0005 7 16 1.7193 -2.7685 0.0002 8 8 1.6701 -3.1748 -1.3606 9 8 0.5974 -2.8288 0.8703 10 7 2.9132 -3.6672 0.7138 11 6 3.9389 -4.3097 -0.1118 12 6 5.2779 -3.6773 0.1683 13 1 5.3520 -2.8563 0.8659 14 6 6.4084 -4.1469 -0.4663 15 7 6.3182 -5.1470 -1.3156 16 14 8.0679 -3.3627 -0.1197 17 1 8.7178 -4.0617 1.0179 18 1 8.9285 -3.4721 -1.3249 19 1 7.8766 -1.9306 0.2235 20 6 2.9438 -3.8199 2.1704 21 6 2.2302 -5.1153 2.5625 22 6 2.1623 -5.2133 4.0296 23 7 2.1098 -5.2888 5.1621 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 4.4053 1.3712 -0.0003 28 1 4.4211 -1.2961 0.0085 29 1 3.9826 -5.3728 0.1249 30 1 3.6901 -4.1820 -1.1652 31 1 7.1135 -5.4776 -1.7618 32 1 3.9788 -3.8580 2.5101 33 1 2.4398 -2.9725 2.6352 34 1 1.2208 -5.1128 2.1514 35 1 2.7818 -5.9680 2.1666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360831646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:00 Heat of formation + Delta-G solvation = 16.595235 kcal Electronic energy + Delta-G solvation = -22514.930868 eV Core-core repulsion = 19062.680522 eV Total energy + Delta-G solvation = -3452.250345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19627 -38.53770 -38.31817 -37.12196 -37.07107 -34.60454 -34.34439 -32.11760 -31.47879 -28.75196 -27.78119 -25.46746 -23.80231 -23.19543 -22.27554 -19.89493 -19.06082 -18.66492 -18.31975 -18.10198 -17.28326 -16.67889 -16.40921 -16.23077 -15.83156 -15.31448 -15.05292 -14.85853 -14.80339 -14.31870 -13.97316 -13.78117 -13.59540 -13.55964 -13.39656 -13.26905 -13.22355 -12.96995 -12.86302 -12.62714 -12.55348 -12.39301 -12.05744 -11.86786 -11.60473 -11.57884 -10.83804 -10.48862 -9.90978 -9.79617 -8.08076 -6.18679 -0.76704 0.23202 1.34747 1.52401 1.56359 1.59996 1.62812 1.71987 1.86545 1.92169 2.49630 2.52450 3.12150 3.26990 3.43216 3.54426 3.88888 4.11766 4.18723 4.24183 4.37091 4.43915 4.50460 4.56637 4.61772 4.88964 5.07664 5.17020 5.45530 5.51391 5.54361 5.66669 5.75198 5.91052 6.20068 6.36633 6.62785 6.93669 7.51308 9.00133 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.007730 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.754029 B = 3621.234905 C = 5131.897995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.325 5.325 3 N -0.281 5.281 4 C 0.028 3.972 5 C -0.166 4.166 6 C -0.502 4.502 7 S 2.719 3.281 8 O -0.974 6.974 9 O -0.956 6.956 10 N -0.964 5.964 11 C 0.249 3.751 12 C -0.539 4.539 13 H 0.082 0.918 14 C 0.020 3.980 15 N -0.924 5.924 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.295 1.295 19 H -0.257 1.257 20 C 0.128 3.872 21 C -0.046 4.046 22 C 0.247 3.753 23 N -0.492 5.492 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.224 0.776 28 H 0.175 0.825 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 6.831 3.028 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.111 5.111 3 N -0.106 5.106 4 C -0.156 4.156 5 C -0.198 4.198 6 C -0.709 4.709 7 S 2.803 3.197 8 O -0.964 6.964 9 O -0.946 6.946 10 N -0.804 5.804 11 C 0.126 3.874 12 C -0.578 4.578 13 H 0.100 0.900 14 C -0.181 4.181 15 N -0.563 5.563 16 Si 0.772 3.228 17 H -0.205 1.205 18 H -0.222 1.222 19 H -0.181 1.181 20 C 0.001 3.999 21 C -0.087 4.087 22 C -0.070 4.070 23 N -0.170 5.170 24 H 0.125 0.875 25 H 0.140 0.860 26 H 0.108 0.892 27 H 0.240 0.760 28 H 0.192 0.808 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.611 7.357 4.253 12.829 hybrid contribution 2.199 0.044 -0.523 2.261 sum -7.412 7.401 3.730 11.119 Atomic orbital electron populations 1.22543 0.71783 1.06260 1.06289 1.48472 1.07322 1.01453 1.53823 1.77121 1.02854 1.09229 1.21402 1.24635 0.95824 0.95079 1.00046 1.22216 0.96224 0.96500 1.04832 1.33871 1.01332 1.17163 1.18575 1.01433 0.73063 0.72116 0.73130 1.93594 1.86247 1.80746 1.35811 1.93560 1.47861 1.86492 1.66703 1.57116 1.46094 1.62278 1.14936 1.19087 0.84624 0.93939 0.89720 1.21809 0.92236 1.18118 1.25635 0.89980 1.25622 1.02263 0.95360 0.94824 1.70031 1.30494 1.27037 1.28780 0.85742 0.80143 0.79843 0.77113 1.20541 1.22184 1.18060 1.21203 1.03728 0.96580 0.78413 1.19903 1.05809 1.02263 0.80750 1.29193 0.91218 0.91572 0.95006 1.81219 1.11082 1.10442 1.14247 0.87538 0.86037 0.89215 0.75981 0.80799 0.93923 0.94867 0.92744 0.87748 0.89099 0.85440 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 10.69 127.77 1.37 2.89 16 2 N -0.33 -9.77 4.01 -366.70 -1.47 -11.24 16 3 N -0.28 -8.54 12.58 -57.03 -0.72 -9.26 16 4 C 0.03 0.80 12.03 85.24 1.03 1.82 16 5 C -0.17 -5.38 10.64 21.99 0.23 -5.14 16 6 C -0.50 -16.36 6.89 83.54 0.58 -15.78 16 7 S 2.72 88.82 5.24 -56.49 -0.30 88.52 16 8 O -0.97 -38.98 16.44 -128.00 -2.10 -41.09 16 9 O -0.96 -28.95 15.92 -128.00 -2.04 -30.99 16 10 N -0.96 -30.85 2.77 -519.86 -1.44 -32.30 16 11 C 0.25 10.17 5.62 85.63 0.48 10.65 16 12 C -0.54 -23.60 7.61 25.60 0.19 -23.41 16 13 H 0.08 3.30 6.75 -2.91 -0.02 3.28 16 14 C 0.02 0.94 5.46 84.66 0.46 1.40 16 15 N -0.92 -48.30 13.29 21.45 0.28 -48.01 16 16 Si 0.95 38.11 29.54 68.60 2.03 40.14 16 17 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 18 H -0.30 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 20 C 0.13 3.27 5.18 86.38 0.45 3.72 16 21 C -0.05 -0.98 6.03 28.79 0.17 -0.81 16 22 C 0.25 6.27 15.43 89.44 1.38 7.65 16 23 N -0.49 -15.13 18.54 20.01 0.37 -14.75 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 1.83 7.34 -2.38 -0.02 1.82 16 27 H 0.22 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.17 5.84 5.83 -2.91 -0.02 5.82 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.56 6.74 -2.39 -0.02 1.54 16 31 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 32 H 0.10 2.70 7.51 -2.39 -0.02 2.68 16 33 H 0.09 2.05 7.72 -2.38 -0.02 2.03 16 34 H 0.13 2.44 8.02 -2.39 -0.02 2.42 16 35 H 0.13 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -64.33 324.07 2.08 -62.25 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.12 Total: 13.73 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 6.34 Total: -17.01 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -2.97 Total: -115.56 kcal Atomic # 8 Polarization: -67.94 SS G_CDS: -4.14 Total: -72.08 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: 88.82 SS G_CDS: -0.30 Total: 88.52 kcal Total: -64.33 2.08 -62.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360831646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.848 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds