Wall clock time and date at job start Tue Mar 31 2020 03:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42105 * 110.54530 * 2 1 4 4 O 1.42101 * 110.54333 * 136.75172 * 2 1 3 5 5 N 1.65599 * 104.44748 * 248.37606 * 2 1 3 6 6 C 1.47023 * 125.64916 * 90.02574 * 5 2 1 7 7 C 1.54330 * 107.27207 * 181.02152 * 6 5 2 8 8 C 1.55155 * 102.93828 * 22.19294 * 7 6 5 9 9 H 1.08998 * 111.00685 * 82.61516 * 8 7 6 10 10 N 1.46505 * 111.00191 * 206.42279 * 8 7 6 11 11 S 1.65597 * 120.00007 * 263.54653 * 10 8 7 12 12 O 1.42102 * 106.40323 * 178.53706 * 11 10 8 13 13 O 1.42096 * 106.40422 * 311.46256 * 11 10 8 14 14 C 1.76198 * 107.21773 * 65.00020 * 11 10 8 15 15 H 1.08002 * 120.00003 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00099 * 179.97438 * 14 11 10 17 17 N 1.31519 * 120.00245 * 180.02562 * 16 14 11 18 18 Si 1.86794 * 120.00080 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47444 * 89.99777 * 18 16 14 20 20 H 1.48499 * 109.47444 * 210.00050 * 18 16 14 21 21 H 1.48503 * 109.47230 * 329.99828 * 18 16 14 22 22 C 1.47421 * 125.64848 * 269.71560 * 5 2 1 23 23 H 1.09003 * 109.47393 * 51.62062 * 1 2 3 24 24 H 1.08994 * 109.47678 * 171.62679 * 1 2 3 25 25 H 1.09002 * 109.47051 * 291.62872 * 1 2 3 26 26 H 1.08999 * 109.88376 * 300.44128 * 6 5 2 27 27 H 1.09003 * 109.88340 * 61.45337 * 6 5 2 28 28 H 1.09001 * 110.72164 * 140.55344 * 7 6 5 29 29 H 1.08996 * 110.71838 * 263.65768 * 7 6 5 30 30 H 0.96996 * 120.00171 * 83.54839 * 10 8 7 31 31 H 0.96995 * 120.00628 * 180.02562 * 17 16 14 32 32 H 1.09004 * 110.37103 * 274.75077 * 22 5 2 33 33 H 1.08999 * 110.36688 * 37.07134 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 0.9117 5 7 2.2271 -0.5910 -1.4908 6 6 2.4414 0.2139 -2.7023 7 6 2.7811 -0.7633 -3.8475 8 6 2.1846 -2.1054 -3.3473 9 1 1.1173 -2.1625 -3.5613 10 7 2.8958 -3.2458 -3.9304 11 16 2.2929 -3.9968 -5.2775 12 8 3.2153 -5.0251 -5.6104 13 8 0.9170 -4.2406 -5.0191 14 6 2.3521 -2.8294 -6.5960 15 1 2.7361 -1.8354 -6.4203 16 6 1.9081 -3.1849 -7.8520 17 7 1.9528 -2.3137 -8.8363 18 14 1.2432 -4.9039 -8.1558 19 1 -0.2205 -4.9199 -7.9056 20 1 1.5091 -5.2960 -9.5631 21 1 1.9124 -5.8625 -7.2400 22 6 2.4472 -2.0107 -1.8214 23 1 -0.3634 0.6380 -0.8056 24 1 -0.3634 -1.0166 -0.1496 25 1 -0.3633 0.3788 0.9553 26 1 1.5345 0.7680 -2.9445 27 1 3.2682 0.9068 -2.5456 28 1 2.3028 -0.4508 -4.7758 29 1 3.8602 -0.8430 -3.9790 30 1 3.7199 -3.5610 -3.5274 31 1 1.6401 -2.5636 -9.7198 32 1 3.4731 -2.2990 -1.5920 33 1 1.7444 -2.6405 -1.2761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400211772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:26 Heat of formation + Delta-G solvation = -141.889310 kcal Electronic energy + Delta-G solvation = -20928.352867 eV Core-core repulsion = 17436.548222 eV Total energy + Delta-G solvation = -3491.804645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.054 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.69419 -37.27005 -36.10762 -35.69418 -34.50811 -33.83915 -33.08121 -29.94840 -29.60291 -27.90008 -26.45149 -22.52260 -21.10673 -19.38062 -18.94528 -17.87808 -17.70386 -16.87129 -16.63723 -16.05562 -15.75502 -15.26263 -14.63524 -13.93772 -13.74982 -13.71582 -13.47755 -13.41756 -13.24375 -12.91297 -12.88377 -12.33884 -12.27686 -12.16804 -11.91558 -11.61556 -11.44908 -11.23428 -11.21888 -10.82960 -10.73565 -10.58783 -10.55697 -9.89425 -9.30828 -9.25955 -9.10737 -8.70892 -6.85644 -5.40162 0.04437 1.95818 2.46266 3.03871 3.13523 3.23152 3.68857 3.86831 3.90972 4.15543 4.47128 4.54396 4.59459 4.67346 4.90385 5.07075 5.24610 5.27624 5.38829 5.43929 5.51987 5.76526 5.79601 5.96236 6.05413 6.12844 6.22525 6.38877 6.60502 7.41849 7.61674 8.15390 8.65392 10.26123 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.004370 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.099658 B = 6405.705791 C = 6679.411802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.630 3.370 3 O -0.955 6.955 4 O -0.955 6.955 5 N -1.013 6.013 6 C 0.122 3.878 7 C -0.151 4.151 8 C 0.147 3.853 9 H 0.111 0.889 10 N -1.114 6.114 11 S 2.673 3.327 12 O -1.007 7.007 13 O -1.012 7.012 14 C -1.015 5.015 15 H 0.126 0.874 16 C 0.154 3.846 17 N -0.822 5.822 18 Si 0.801 3.199 19 H -0.247 1.247 20 H -0.255 1.255 21 H -0.221 1.221 22 C 0.119 3.881 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.125 0.875 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.281 0.719 32 H 0.078 0.922 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 5.366 13.405 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.723 3.277 3 O -0.945 6.945 4 O -0.945 6.945 5 N -0.852 5.852 6 C -0.004 4.004 7 C -0.192 4.192 8 C 0.037 3.963 9 H 0.129 0.871 10 N -0.868 5.868 11 S 2.775 3.225 12 O -0.997 6.997 13 O -1.001 7.001 14 C -1.149 5.149 15 H 0.143 0.857 16 C -0.066 4.066 17 N -0.451 5.451 18 Si 0.621 3.379 19 H -0.171 1.171 20 H -0.180 1.180 21 H -0.143 1.143 22 C -0.008 4.008 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.278 4.890 13.895 14.906 hybrid contribution -0.506 -0.187 -0.819 0.981 sum -2.784 4.703 13.076 14.172 Atomic orbital electron populations 1.30590 1.28742 1.11898 1.11256 1.04348 0.77586 0.73744 0.72004 1.93603 1.77687 1.37679 1.85549 1.93609 1.77671 1.61836 1.61395 1.58538 1.84464 1.15553 1.26608 1.21768 1.01420 0.93784 0.83392 1.23274 1.03142 0.94482 0.98277 1.21829 0.97520 0.85511 0.91433 0.87127 1.55487 1.37817 1.45510 1.48020 1.01434 0.73099 0.74409 0.73566 1.93487 1.64941 1.57976 1.83274 1.93406 1.35173 1.86082 1.85466 1.30467 1.56849 1.17226 1.10377 0.85656 1.24410 0.90223 0.97258 0.94681 1.69977 1.38163 1.34863 1.02072 0.87875 0.82721 0.84766 0.82540 1.17073 1.17951 1.14291 1.22271 1.02369 0.80354 0.95829 0.85211 0.85169 0.85608 0.91363 0.90720 0.88313 0.89650 0.75985 0.90878 0.90348 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.42 10.99 101.05 1.11 -3.31 16 2 S 2.63 26.60 6.29 -107.50 -0.68 25.93 16 3 O -0.95 -12.45 17.60 -57.54 -1.01 -13.46 16 4 O -0.95 -12.62 17.60 -57.54 -1.01 -13.63 16 5 N -1.01 -10.99 3.62 -111.29 -0.40 -11.40 16 6 C 0.12 1.32 6.89 -3.06 -0.02 1.30 16 7 C -0.15 -1.99 6.33 -24.89 -0.16 -2.15 16 8 C 0.15 2.12 3.71 -65.66 -0.24 1.88 16 9 H 0.11 1.64 7.62 -51.93 -0.40 1.24 16 10 N -1.11 -18.80 5.65 -2.97 -0.02 -18.82 16 11 S 2.67 61.85 4.23 -107.50 -0.45 61.40 16 12 O -1.01 -25.70 16.02 -57.17 -0.92 -26.62 16 13 O -1.01 -25.08 16.23 -57.17 -0.93 -26.01 16 14 C -1.01 -26.17 10.26 30.60 0.31 -25.86 16 15 H 0.13 3.17 7.03 -52.49 -0.37 2.80 16 16 C 0.15 4.20 5.47 -17.82 -0.10 4.10 16 17 N -0.82 -22.62 13.96 55.43 0.77 -21.85 16 18 Si 0.80 19.81 26.54 -169.99 -4.51 15.30 16 19 H -0.25 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.26 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.22 -5.59 5.61 56.52 0.32 -5.27 16 22 C 0.12 1.39 6.55 -2.41 -0.02 1.38 16 23 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 24 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 1.40 7.45 -51.93 -0.39 1.01 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.41 5.78 8.74 -34.46 -0.30 5.48 16 31 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -35.63 301.92 -7.77 -43.40 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.05 Total: 3.88 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 0.89 Total: -22.66 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.35 Total: -52.06 kcal Atomic # 8 Polarization: -75.86 SS G_CDS: -3.87 Total: -79.73 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.51 Total: 15.30 kcal Atomic # 16 Polarization: 88.46 SS G_CDS: -1.13 Total: 87.32 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.63 -7.77 -43.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400211772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.494 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds