Wall clock time and date at job start Tue Mar 31 2020 03:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42105 * 110.54530 * 2 1 4 4 O 1.42101 * 110.54333 * 136.75172 * 2 1 3 5 5 N 1.65599 * 104.44748 * 248.37606 * 2 1 3 6 6 C 1.47023 * 125.64916 * 90.02574 * 5 2 1 7 7 C 1.54330 * 107.27207 * 181.02152 * 6 5 2 8 8 C 1.55155 * 102.93828 * 22.19294 * 7 6 5 9 9 H 1.08998 * 111.00685 * 82.61516 * 8 7 6 10 10 N 1.46505 * 111.00191 * 206.42279 * 8 7 6 11 11 S 1.65597 * 120.00007 * 263.54653 * 10 8 7 12 12 O 1.42102 * 106.40323 * 178.53706 * 11 10 8 13 13 O 1.42096 * 106.40422 * 311.46256 * 11 10 8 14 14 C 1.76198 * 107.21773 * 65.00020 * 11 10 8 15 15 H 1.08002 * 120.00003 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00099 * 179.97438 * 14 11 10 17 17 N 1.31519 * 120.00245 * 180.02562 * 16 14 11 18 18 Si 1.86794 * 120.00080 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47444 * 89.99777 * 18 16 14 20 20 H 1.48499 * 109.47444 * 210.00050 * 18 16 14 21 21 H 1.48503 * 109.47230 * 329.99828 * 18 16 14 22 22 C 1.47421 * 125.64848 * 269.71560 * 5 2 1 23 23 H 1.09003 * 109.47393 * 51.62062 * 1 2 3 24 24 H 1.08994 * 109.47678 * 171.62679 * 1 2 3 25 25 H 1.09002 * 109.47051 * 291.62872 * 1 2 3 26 26 H 1.08999 * 109.88376 * 300.44128 * 6 5 2 27 27 H 1.09003 * 109.88340 * 61.45337 * 6 5 2 28 28 H 1.09001 * 110.72164 * 140.55344 * 7 6 5 29 29 H 1.08996 * 110.71838 * 263.65768 * 7 6 5 30 30 H 0.96996 * 120.00171 * 83.54839 * 10 8 7 31 31 H 0.96995 * 120.00628 * 180.02562 * 17 16 14 32 32 H 1.09004 * 110.37103 * 274.75077 * 22 5 2 33 33 H 1.08999 * 110.36688 * 37.07134 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 0.9117 5 7 2.2271 -0.5910 -1.4908 6 6 2.4414 0.2139 -2.7023 7 6 2.7811 -0.7633 -3.8475 8 6 2.1846 -2.1054 -3.3473 9 1 1.1173 -2.1625 -3.5613 10 7 2.8958 -3.2458 -3.9304 11 16 2.2929 -3.9968 -5.2775 12 8 3.2153 -5.0251 -5.6104 13 8 0.9170 -4.2406 -5.0191 14 6 2.3521 -2.8294 -6.5960 15 1 2.7361 -1.8354 -6.4203 16 6 1.9081 -3.1849 -7.8520 17 7 1.9528 -2.3137 -8.8363 18 14 1.2432 -4.9039 -8.1558 19 1 -0.2205 -4.9199 -7.9056 20 1 1.5091 -5.2960 -9.5631 21 1 1.9124 -5.8625 -7.2400 22 6 2.4472 -2.0107 -1.8214 23 1 -0.3634 0.6380 -0.8056 24 1 -0.3634 -1.0166 -0.1496 25 1 -0.3633 0.3788 0.9553 26 1 1.5345 0.7680 -2.9445 27 1 3.2682 0.9068 -2.5456 28 1 2.3028 -0.4508 -4.7758 29 1 3.8602 -0.8430 -3.9790 30 1 3.7199 -3.5610 -3.5274 31 1 1.6401 -2.5636 -9.7198 32 1 3.4731 -2.2990 -1.5920 33 1 1.7444 -2.6405 -1.2761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400211772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:26 Heat of formation + Delta-G solvation = -174.215187 kcal Electronic energy + Delta-G solvation = -20929.754623 eV Core-core repulsion = 17436.548222 eV Total energy + Delta-G solvation = -3493.206400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70842 -38.16514 -37.62667 -37.00421 -36.45236 -35.18896 -35.01344 -30.91301 -30.21060 -28.96942 -28.46558 -23.48341 -22.23123 -21.07995 -19.89249 -19.51301 -18.74039 -18.61948 -17.59081 -17.31756 -16.85536 -16.80468 -16.07287 -15.49756 -15.35051 -14.96590 -14.59927 -14.46324 -14.18757 -13.92618 -13.79887 -13.68106 -13.38676 -13.21483 -13.15730 -13.10596 -13.03794 -12.66798 -12.55548 -12.52801 -12.31349 -11.96999 -11.79140 -11.64226 -11.28614 -11.11608 -10.24826 -9.92415 -8.90665 -7.44830 -0.71503 0.17650 1.09358 1.17630 1.25512 1.63839 1.92959 2.47771 2.59183 2.96503 3.10080 3.35281 3.48768 3.81031 4.05629 4.09614 4.21339 4.22710 4.36008 4.42150 4.58004 4.67116 4.86472 4.96749 5.05480 5.11095 5.18227 5.37251 5.41075 5.47842 6.12313 6.32721 6.61529 8.25806 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.004370 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.099658 B = 6405.705791 C = 6679.411802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.637 3.363 3 O -0.989 6.989 4 O -0.990 6.990 5 N -1.015 6.015 6 C 0.123 3.877 7 C -0.153 4.153 8 C 0.134 3.866 9 H 0.108 0.892 10 N -1.099 6.099 11 S 2.695 3.305 12 O -1.032 7.032 13 O -1.028 7.028 14 C -1.030 5.030 15 H 0.120 0.880 16 C 0.113 3.887 17 N -0.852 5.852 18 Si 0.819 3.181 19 H -0.240 1.240 20 H -0.227 1.227 21 H -0.231 1.231 22 C 0.121 3.879 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.422 0.578 31 H 0.289 0.711 32 H 0.083 0.917 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 5.455 14.572 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.735 3.265 3 O -0.980 6.980 4 O -0.981 6.981 5 N -0.853 5.853 6 C -0.002 4.002 7 C -0.193 4.193 8 C 0.025 3.975 9 H 0.125 0.875 10 N -0.859 5.859 11 S 2.795 3.205 12 O -1.022 7.022 13 O -1.017 7.017 14 C -1.163 5.163 15 H 0.138 0.862 16 C -0.104 4.104 17 N -0.482 5.482 18 Si 0.637 3.363 19 H -0.163 1.163 20 H -0.150 1.150 21 H -0.154 1.154 22 C -0.006 4.006 23 H 0.165 0.835 24 H 0.164 0.836 25 H 0.166 0.834 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.258 0.742 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.327 4.989 15.036 16.187 hybrid contribution -0.185 -0.139 -1.095 1.120 sum -3.512 4.850 13.940 15.172 Atomic orbital electron populations 1.30389 1.23382 1.13608 1.13368 1.03988 0.79225 0.72306 0.71005 1.93559 1.79664 1.38990 1.85749 1.93562 1.79670 1.62518 1.62338 1.58462 1.85360 1.14968 1.26533 1.21772 1.02739 0.93233 0.82498 1.23229 1.02873 0.94571 0.98661 1.22102 0.97154 0.84802 0.93469 0.87455 1.54939 1.38584 1.46126 1.46227 1.00567 0.72531 0.73613 0.73755 1.93447 1.65468 1.58962 1.84339 1.93379 1.36269 1.86238 1.85850 1.30976 1.55949 1.17943 1.11445 0.86203 1.25059 0.90746 0.99492 0.95122 1.70002 1.39359 1.36088 1.02771 0.87580 0.82666 0.82091 0.83979 1.16293 1.14952 1.15375 1.22236 1.03417 0.81287 0.93687 0.83452 0.83647 0.83386 0.89106 0.90472 0.89790 0.89763 0.74223 0.90038 0.89831 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.97 10.99 113.37 1.25 -4.73 16 2 S 2.64 48.08 6.29 -56.49 -0.36 47.72 16 3 O -0.99 -24.49 17.60 -127.65 -2.25 -26.74 16 4 O -0.99 -24.76 17.60 -127.65 -2.25 -27.01 16 5 N -1.02 -20.00 3.62 -506.00 -1.83 -21.83 16 6 C 0.12 2.47 6.89 86.73 0.60 3.07 16 7 C -0.15 -3.91 6.33 31.78 0.20 -3.70 16 8 C 0.13 3.68 3.71 46.46 0.17 3.85 16 9 H 0.11 3.04 7.62 -2.39 -0.02 3.02 16 10 N -1.10 -35.95 5.65 -163.30 -0.92 -36.87 16 11 S 2.70 123.16 4.23 -56.49 -0.24 122.92 16 12 O -1.03 -52.20 16.02 -128.00 -2.05 -54.25 16 13 O -1.03 -50.06 16.23 -128.00 -2.08 -52.13 16 14 C -1.03 -53.32 10.26 67.74 0.69 -52.63 16 15 H 0.12 6.15 7.03 -2.91 -0.02 6.13 16 16 C 0.11 6.13 5.47 84.65 0.46 6.60 16 17 N -0.85 -46.99 13.96 21.45 0.30 -46.69 16 18 Si 0.82 39.45 26.54 68.60 1.82 41.27 16 19 H -0.24 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.23 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.23 -11.50 5.61 99.48 0.56 -10.94 16 22 C 0.12 2.59 6.55 86.93 0.57 3.16 16 23 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 2.39 7.45 -2.39 -0.02 2.37 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.42 11.41 8.74 -96.75 -0.85 10.57 16 31 H 0.29 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.08 1.70 8.02 -2.38 -0.02 1.68 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -75.70 301.92 -5.76 -81.46 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.14 Total: 16.53 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 3.94 Total: -44.38 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -2.45 Total: -105.38 kcal Atomic # 8 Polarization: -151.51 SS G_CDS: -8.62 Total: -160.13 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.82 Total: 41.27 kcal Atomic # 16 Polarization: 171.23 SS G_CDS: -0.59 Total: 170.64 kcal Total: -75.70 -5.76 -81.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400211772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.751 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds