Wall clock time and date at job start Tue Mar 31 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46947 * 269.99580 * 3 2 1 5 5 H 1.48504 * 109.47166 * 29.99447 * 3 2 1 6 6 H 1.48498 * 109.47281 * 149.99592 * 3 2 1 7 7 C 1.37880 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99464 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00147 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40587 * 66.45941 * 9 7 2 11 11 O 1.42101 * 106.40166 * 293.53930 * 9 7 2 12 12 N 1.65598 * 107.21747 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00316 * 64.99882 * 12 9 7 14 14 C 1.53006 * 109.46998 * 165.00032 * 13 12 9 15 15 N 1.46500 * 109.46998 * 180.02562 * 14 13 12 16 16 C 1.47069 * 126.30253 * 274.69225 * 15 14 13 17 17 C 1.54312 * 109.97218 * 150.90232 * 16 15 14 18 18 C 1.55611 * 104.18855 * 45.50518 * 17 16 15 19 19 S 1.66999 * 126.30237 * 94.99687 * 15 14 13 20 20 O 1.42100 * 105.13628 * 298.89448 * 19 15 14 21 21 O 1.42096 * 105.13093 * 68.56859 * 19 15 14 22 22 H 0.96996 * 120.00205 * 0.02562 * 1 2 3 23 23 H 0.97010 * 119.99914 * 244.99645 * 12 9 7 24 24 H 1.09000 * 109.47175 * 45.00163 * 13 12 9 25 25 H 1.09001 * 109.47297 * 284.99670 * 13 12 9 26 26 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 27 27 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 28 28 H 1.09001 * 109.35331 * 271.18457 * 16 15 14 29 29 H 1.08997 * 109.35581 * 30.82396 * 16 15 14 30 30 H 1.09005 * 110.64826 * 286.77454 * 17 16 15 31 31 H 1.09001 * 110.38801 * 164.11021 * 17 16 15 32 32 H 1.09004 * 111.16547 * 204.06066 * 18 17 16 33 33 H 1.08994 * 111.16562 * 79.79827 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0019 13 6 3.1384 -4.1084 1.1525 14 6 3.8038 -5.4843 1.0802 15 7 4.6936 -5.6575 2.2311 16 6 6.0906 -5.2080 2.3271 17 6 6.4451 -4.8990 3.7968 18 6 5.8707 -6.1082 4.5901 19 16 4.3104 -6.4079 3.6730 20 8 3.2401 -5.6462 4.2147 21 8 4.1607 -7.7829 3.3472 22 1 -0.4850 0.8400 -0.0004 23 1 2.3176 -4.5329 -0.7591 24 1 2.5607 -4.0321 2.0737 25 1 3.9046 -3.3332 1.1389 26 1 3.0377 -6.2594 1.0938 27 1 4.3816 -5.5605 0.1591 28 1 6.7487 -5.9913 1.9509 29 1 6.2225 -4.3078 1.7270 30 1 5.9715 -3.9717 4.1196 31 1 7.5262 -4.8397 3.9223 32 1 5.6719 -5.8396 5.6277 33 1 6.5349 -6.9702 4.5292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405944091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:45 Heat of formation + Delta-G solvation = -151.823598 kcal Electronic energy + Delta-G solvation = -20712.444459 eV Core-core repulsion = 17220.209031 eV Total energy + Delta-G solvation = -3492.235428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.054 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -37.76825 -37.08974 -36.01175 -35.31845 -34.96978 -33.89220 -33.07532 -32.52913 -28.02275 -26.11585 -26.06982 -22.78390 -22.09601 -19.23312 -18.80014 -17.62155 -17.35616 -16.88711 -16.09396 -15.96500 -15.43724 -15.04454 -14.72313 -14.58643 -14.34661 -13.95971 -13.81073 -13.42142 -13.21135 -12.60083 -12.29438 -12.13411 -12.01036 -11.99894 -11.67137 -11.62781 -11.22204 -11.19484 -11.03731 -10.69219 -10.59256 -10.44320 -10.22827 -10.12080 -9.22359 -9.16221 -8.97602 -8.45131 -6.67071 -5.28796 0.04749 2.23128 2.48773 3.07729 3.14488 3.20101 3.47045 3.64615 4.03367 4.08338 4.23910 4.60637 4.66332 4.67315 4.84271 4.97471 5.08795 5.23444 5.27984 5.38130 5.51285 5.56440 5.61197 5.83518 6.22090 6.24537 6.33803 6.61543 6.85804 7.34654 7.91887 8.00100 8.91575 10.27304 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.004544 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.061752 B = 6161.039893 C = 6730.727194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.007 7.007 11 O -1.003 7.003 12 N -1.137 6.137 13 C 0.101 3.899 14 C 0.152 3.848 15 N -0.988 5.988 16 C 0.077 3.923 17 C -0.127 4.127 18 C -0.601 4.601 19 S 2.566 3.434 20 O -0.943 6.943 21 O -0.960 6.960 22 H 0.291 0.709 23 H 0.401 0.599 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.011 -9.820 6.638 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.997 6.997 11 O -0.993 6.993 12 N -0.892 5.892 13 C -0.028 4.028 14 C 0.027 3.973 15 N -0.831 5.831 16 C -0.050 4.050 17 C -0.166 4.166 18 C -0.731 4.731 19 S 2.662 3.338 20 O -0.932 6.932 21 O -0.949 6.949 22 H 0.101 0.899 23 H 0.232 0.768 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.158 0.842 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.935 -10.235 6.984 19.406 hybrid contribution 1.796 1.296 -0.292 2.234 sum 16.731 -8.939 6.692 20.115 Atomic orbital electron populations 1.69898 1.06778 1.30695 1.40051 1.24751 0.94464 1.00809 0.88577 0.86156 0.80092 0.80147 0.79054 1.19267 1.19999 1.18774 1.30537 1.06009 1.11906 1.66858 0.88047 1.00435 0.72064 0.73240 0.72844 1.93373 1.72997 1.87656 1.45660 1.93377 1.72682 1.87386 1.45822 1.55954 1.55879 1.51254 1.26110 1.21575 0.94055 0.96802 0.90403 1.21264 0.91606 0.97368 0.87067 1.57167 1.18895 1.75440 1.31553 1.22135 0.82916 1.02765 0.97144 1.22720 1.04630 0.96966 0.92321 1.30864 1.21801 1.07978 1.12455 1.06626 0.76671 0.74762 0.75773 1.93684 1.50273 1.70852 1.78440 1.93606 1.85431 1.33756 1.82101 0.89901 0.76803 0.89557 0.91775 0.89740 0.89616 0.90675 0.88435 0.88317 0.87274 0.84154 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.08 13.19 55.43 0.73 -24.35 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -1.02 -28.01 9.72 30.60 0.30 -27.71 16 8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 9 S 2.71 72.72 5.02 -107.50 -0.54 72.18 16 10 O -1.01 -29.59 18.02 -57.17 -1.03 -30.62 16 11 O -1.00 -30.17 17.49 -57.17 -1.00 -31.17 16 12 N -1.14 -22.23 6.00 -10.61 -0.06 -22.30 16 13 C 0.10 1.72 6.55 -4.04 -0.03 1.69 16 14 C 0.15 1.94 6.50 -4.04 -0.03 1.92 16 15 N -0.99 -10.88 3.31 -113.19 -0.38 -11.26 16 16 C 0.08 0.53 6.83 -3.04 -0.02 0.51 16 17 C -0.13 -0.69 6.81 -24.65 -0.17 -0.86 16 18 C -0.60 -3.62 7.51 38.55 0.29 -3.33 16 19 S 2.57 29.79 6.17 -107.50 -0.66 29.13 16 20 O -0.94 -15.34 18.14 -57.41 -1.04 -16.38 16 21 O -0.96 -13.88 18.13 -57.41 -1.04 -14.93 16 22 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 23 H 0.40 6.48 8.65 -34.47 -0.30 6.19 16 24 H 0.09 1.70 7.75 -51.93 -0.40 1.29 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -41.34 311.51 -9.15 -50.49 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.05 Total: 3.17 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 0.25 Total: -24.18 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.29 Total: -57.90 kcal Atomic # 8 Polarization: -88.98 SS G_CDS: -4.11 Total: -93.09 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 102.51 SS G_CDS: -1.20 Total: 101.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -41.34 -9.15 -50.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405944091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.329 kcal (2) G-P(sol) polarization free energy of solvation -41.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds