Wall clock time and date at job start Tue Mar 31 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46947 * 269.99580 * 3 2 1 5 5 H 1.48504 * 109.47166 * 29.99447 * 3 2 1 6 6 H 1.48498 * 109.47281 * 149.99592 * 3 2 1 7 7 C 1.37880 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99464 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00147 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40587 * 66.45941 * 9 7 2 11 11 O 1.42101 * 106.40166 * 293.53930 * 9 7 2 12 12 N 1.65598 * 107.21747 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00316 * 64.99882 * 12 9 7 14 14 C 1.53006 * 109.46998 * 165.00032 * 13 12 9 15 15 N 1.46500 * 109.46998 * 180.02562 * 14 13 12 16 16 C 1.47069 * 126.30253 * 274.69225 * 15 14 13 17 17 C 1.54312 * 109.97218 * 150.90232 * 16 15 14 18 18 C 1.55611 * 104.18855 * 45.50518 * 17 16 15 19 19 S 1.66999 * 126.30237 * 94.99687 * 15 14 13 20 20 O 1.42100 * 105.13628 * 298.89448 * 19 15 14 21 21 O 1.42096 * 105.13093 * 68.56859 * 19 15 14 22 22 H 0.96996 * 120.00205 * 0.02562 * 1 2 3 23 23 H 0.97010 * 119.99914 * 244.99645 * 12 9 7 24 24 H 1.09000 * 109.47175 * 45.00163 * 13 12 9 25 25 H 1.09001 * 109.47297 * 284.99670 * 13 12 9 26 26 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 27 27 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 28 28 H 1.09001 * 109.35331 * 271.18457 * 16 15 14 29 29 H 1.08997 * 109.35581 * 30.82396 * 16 15 14 30 30 H 1.09005 * 110.64826 * 286.77454 * 17 16 15 31 31 H 1.09001 * 110.38801 * 164.11021 * 17 16 15 32 32 H 1.09004 * 111.16547 * 204.06066 * 18 17 16 33 33 H 1.08994 * 111.16562 * 79.79827 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0019 13 6 3.1384 -4.1084 1.1525 14 6 3.8038 -5.4843 1.0802 15 7 4.6936 -5.6575 2.2311 16 6 6.0906 -5.2080 2.3271 17 6 6.4451 -4.8990 3.7968 18 6 5.8707 -6.1082 4.5901 19 16 4.3104 -6.4079 3.6730 20 8 3.2401 -5.6462 4.2147 21 8 4.1607 -7.7829 3.3472 22 1 -0.4850 0.8400 -0.0004 23 1 2.3176 -4.5329 -0.7591 24 1 2.5607 -4.0321 2.0737 25 1 3.9046 -3.3332 1.1389 26 1 3.0377 -6.2594 1.0938 27 1 4.3816 -5.5605 0.1591 28 1 6.7487 -5.9913 1.9509 29 1 6.2225 -4.3078 1.7270 30 1 5.9715 -3.9717 4.1196 31 1 7.5262 -4.8397 3.9223 32 1 5.6719 -5.8396 5.6277 33 1 6.5349 -6.9702 4.5292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405944091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:45 Heat of formation + Delta-G solvation = -190.597742 kcal Electronic energy + Delta-G solvation = -20714.125832 eV Core-core repulsion = 17220.209031 eV Total energy + Delta-G solvation = -3493.916801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.054 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.57411 -38.07834 -37.41740 -37.00726 -36.32881 -36.14314 -35.16357 -33.53580 -29.06163 -28.25787 -26.81836 -23.85742 -22.81683 -21.09207 -19.94281 -19.36424 -18.38794 -18.16723 -17.65965 -17.19721 -16.83083 -16.65557 -16.07515 -15.75134 -15.37411 -15.35657 -15.22854 -14.49899 -14.02524 -13.97882 -13.62259 -13.36941 -13.26494 -13.16027 -13.03770 -12.99187 -12.56050 -12.51864 -12.45951 -12.38827 -12.28010 -12.14544 -11.90246 -11.39054 -11.23327 -10.99910 -10.27049 -9.93485 -8.74043 -7.47615 -0.75073 0.34086 1.35421 1.37118 1.52528 1.54701 2.22553 2.59828 2.69446 2.95297 3.13769 3.39000 3.66177 3.71203 3.93228 3.98103 4.11009 4.32171 4.48161 4.54842 4.57328 4.69212 4.80896 4.90309 4.95597 5.05359 5.13669 5.19713 5.31331 5.64491 5.90775 6.41788 6.78851 8.22891 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.004544 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.061752 B = 6161.039893 C = 6730.727194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.996 3.004 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.243 1.243 7 C -1.035 5.035 8 H 0.126 0.874 9 S 2.715 3.285 10 O -1.043 7.043 11 O -1.049 7.049 12 N -1.119 6.119 13 C 0.094 3.906 14 C 0.156 3.844 15 N -0.992 5.992 16 C 0.064 3.936 17 C -0.127 4.127 18 C -0.551 4.551 19 S 2.535 3.465 20 O -1.010 7.010 21 O -1.002 7.002 22 H 0.298 0.702 23 H 0.419 0.581 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.554 -9.098 6.922 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.148 4.148 3 Si 0.814 3.186 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.166 1.166 7 C -1.169 5.169 8 H 0.144 0.856 9 S 2.816 3.184 10 O -1.033 7.033 11 O -1.038 7.038 12 N -0.880 5.880 13 C -0.035 4.035 14 C 0.030 3.970 15 N -0.834 5.834 16 C -0.061 4.061 17 C -0.166 4.166 18 C -0.687 4.687 19 S 2.638 3.362 20 O -0.999 6.999 21 O -0.992 6.992 22 H 0.108 0.892 23 H 0.253 0.747 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.169 0.831 32 H 0.180 0.820 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 19.436 -9.566 7.237 22.839 hybrid contribution 0.497 1.001 -0.331 1.166 sum 19.932 -8.565 6.906 22.767 Atomic orbital electron populations 1.70009 1.08984 1.32358 1.41459 1.26124 0.95409 1.05697 0.87527 0.85053 0.79150 0.74368 0.80068 1.17750 1.19069 1.16603 1.30848 1.07333 1.12120 1.66644 0.85584 0.99998 0.72726 0.74259 0.71401 1.93311 1.74834 1.88455 1.46669 1.93319 1.74718 1.88279 1.47501 1.55219 1.55126 1.49962 1.27700 1.21821 0.93492 1.00481 0.87659 1.21143 0.92356 0.94077 0.89439 1.57037 1.20449 1.75459 1.30459 1.22561 0.80701 1.04189 0.98646 1.22920 1.06970 0.95946 0.90782 1.30620 1.16114 1.09820 1.12120 1.07236 0.78800 0.73720 0.76488 1.93608 1.55265 1.71579 1.79460 1.93544 1.87153 1.35484 1.82998 0.89153 0.74656 0.93172 0.89866 0.90723 0.85952 0.87778 0.87566 0.88994 0.83061 0.81999 0.80845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.46 13.19 21.45 0.28 -54.17 16 2 C 0.06 3.63 5.46 84.66 0.46 4.09 16 3 Si 1.00 40.89 29.54 68.60 2.03 42.92 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 7 C -1.04 -56.89 9.72 67.73 0.66 -56.23 16 8 H 0.13 6.05 7.81 -2.91 -0.02 6.02 16 9 S 2.72 150.02 5.02 -56.49 -0.28 149.73 16 10 O -1.04 -63.39 18.02 -128.00 -2.31 -65.70 16 11 O -1.05 -66.31 17.49 -128.00 -2.24 -68.55 16 12 N -1.12 -44.30 6.00 -187.48 -1.12 -45.42 16 13 C 0.09 3.22 6.55 86.38 0.57 3.78 16 14 C 0.16 3.87 6.50 86.38 0.56 4.43 16 15 N -0.99 -20.46 3.31 -512.03 -1.70 -22.15 16 16 C 0.06 0.64 6.83 86.72 0.59 1.23 16 17 C -0.13 -0.78 6.81 31.94 0.22 -0.56 16 18 C -0.55 -4.39 7.51 72.88 0.55 -3.84 16 19 S 2.54 58.55 6.17 -56.49 -0.35 58.20 16 20 O -1.01 -35.02 18.14 -127.77 -2.32 -37.34 16 21 O -1.00 -29.64 18.13 -127.77 -2.32 -31.95 16 22 H 0.30 16.26 8.31 -92.71 -0.77 15.48 16 23 H 0.42 13.48 8.65 -96.74 -0.84 12.64 16 24 H 0.05 2.09 7.75 -2.39 -0.02 2.07 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.16 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -96.44 311.51 -6.42 -102.86 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.30 Total: 18.69 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 3.60 Total: -47.10 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -2.54 Total: -121.75 kcal Atomic # 8 Polarization: -194.36 SS G_CDS: -9.18 Total: -203.54 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 208.57 SS G_CDS: -0.63 Total: 207.93 kcal Total: -96.44 -6.42 -102.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405944091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.739 kcal (2) G-P(sol) polarization free energy of solvation -96.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds