Wall clock time and date at job start Tue Mar 31 2020 04:08:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 119.99833 * 2 1
4 4 H 1.48498 * 109.47150 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47073 * 300.00435 * 3 2 1
6 6 H 1.48500 * 109.46899 * 59.99827 * 3 2 1
7 7 C 1.37874 * 120.00456 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00475 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99810 * 0.27713 * 7 2 1
10 10 S 1.81402 * 109.47441 * 179.72434 * 9 7 2
11 11 O 1.42105 * 110.54143 * 291.62650 * 10 9 7
12 12 O 1.42101 * 110.54131 * 68.37168 * 10 9 7
13 13 N 1.65595 * 104.45237 * 179.97438 * 10 9 7
14 14 C 1.47078 * 120.88010 * 269.71967 * 13 10 9
15 15 C 1.53705 * 108.27339 * 128.75508 * 14 13 10
16 16 N 1.46892 * 109.25678 * 54.08263 * 15 14 13
17 17 C 1.46897 * 110.99978 * 172.60620 * 16 15 14
18 18 C 1.53013 * 109.47292 * 201.02251 * 17 16 15
19 19 F 1.39901 * 109.46760 * 294.14135 * 18 17 16
20 20 F 1.39896 * 109.46746 * 54.13564 * 18 17 16
21 21 C 1.46895 * 111.27099 * 296.75869 * 16 15 14
22 22 C 1.47076 * 120.87924 * 89.99854 * 13 10 9
23 23 H 0.96998 * 120.00317 * 359.97438 * 1 2 3
24 24 H 1.09001 * 109.47045 * 299.72482 * 9 7 2
25 25 H 1.09002 * 109.47100 * 59.72195 * 9 7 2
26 26 H 1.08994 * 109.63011 * 248.51806 * 14 13 10
27 27 H 1.08992 * 109.63175 * 9.10739 * 14 13 10
28 28 H 1.08997 * 109.64528 * 294.07736 * 15 14 13
29 29 H 1.08996 * 109.41702 * 173.94841 * 15 14 13
30 30 H 1.09003 * 109.47260 * 321.01785 * 17 16 15
31 31 H 1.08995 * 109.47211 * 81.02491 * 17 16 15
32 32 H 1.08997 * 109.46842 * 174.14174 * 18 17 16
33 33 H 1.09004 * 109.49437 * 303.14134 * 21 16 15
34 34 H 1.09006 * 109.49914 * 183.06670 * 21 16 15
35 35 H 1.09000 * 109.63179 * 350.89916 * 22 13 10
36 36 H 1.09008 * 109.63109 * 111.47753 * 22 13 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8902 2.3965 -1.2124
6 1 1.8902 2.3964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0074
10 16 2.4299 -3.8779 -0.0147
11 8 3.1268 -3.9317 -1.2520
12 8 3.1267 -3.9447 1.2220
13 7 1.4797 -5.2340 -0.0211
14 6 1.0520 -5.8621 1.2382
15 6 -0.4723 -6.0533 1.1880
16 7 -0.8275 -6.7966 -0.0282
17 6 -2.2524 -7.1538 -0.0295
18 6 -2.4832 -8.3271 -0.9842
19 9 -2.2201 -7.9193 -2.2963
20 9 -1.6286 -9.3808 -0.6431
21 6 -0.4730 -6.0413 -1.2371
22 6 1.0461 -5.8459 -1.2863
23 1 -0.4850 0.8400 0.0004
24 1 0.6245 -2.5616 0.8822
25 1 0.6245 -2.5522 -0.8977
26 1 1.5418 -6.8293 1.3498
27 1 1.3139 -5.2168 2.0766
28 1 -0.9635 -5.0803 1.1761
29 1 -0.7962 -6.6140 2.0647
30 1 -2.5563 -7.4397 0.9775
31 1 -2.8414 -6.2974 -0.3575
32 1 -3.5185 -8.6595 -0.9076
33 1 -0.9642 -5.0684 -1.2153
34 1 -0.7975 -6.5932 -2.1193
35 1 1.3042 -5.1900 -2.1177
36 1 1.5355 -6.8117 -1.4127
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408193677.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:08:30
Heat of formation + Delta-G solvation = -166.649688 kcal
Electronic energy + Delta-G solvation = -23307.323800 eV
Core-core repulsion = 19396.438173 eV
Total energy + Delta-G solvation = -3910.885628 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 298.095 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-49.01919 -47.01171 -38.82640 -36.22325 -35.07404 -34.64645 -33.38207 -31.01823
-29.89551 -29.04783 -25.62807 -23.73726 -23.55687 -22.38754 -20.48320 -18.40235
-17.67225 -17.42530 -17.23004 -16.58048 -16.34530 -15.58908 -15.56588 -15.04318
-14.75517 -14.49190 -14.24024 -14.08897 -14.00435 -13.50372 -13.35532 -12.67980
-12.57658 -12.52321 -12.16065 -11.98927 -11.86809 -11.50560 -11.43626 -11.26549
-11.18169 -11.02149 -10.96270 -10.80754 -10.66307 -10.40978 -9.83174 -9.40999
-8.75790 -8.69802 -8.32212 -6.37463 -4.48001 1.26254 3.17159 3.24268
3.31532 3.37761 3.55739 3.76894 4.09031 4.21059 4.32477 4.71395
4.76956 4.87914 4.88756 5.02441 5.10392 5.21036 5.25666 5.39720
5.41658 5.53157 5.58203 5.70840 5.85425 6.03273 6.20130 6.24259
6.56766 6.73337 6.84190 6.88126 7.00513 7.41251 7.71045 8.54523
9.20154 10.74338
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.023716 B = 0.004328 C = 0.004029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1180.350230 B = 6467.521816 C = 6947.485696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.880 5.880
2 C 0.077 3.923
3 Si 0.904 3.096
4 H -0.265 1.265
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.534 4.534
8 H 0.070 0.930
9 C -0.418 4.418
10 S 2.581 3.419
11 O -0.977 6.977
12 O -0.978 6.978
13 N -1.013 6.013
14 C 0.132 3.868
15 C 0.040 3.960
16 N -0.530 5.530
17 C 0.000 4.000
18 C 0.271 3.729
19 F -0.205 7.205
20 F -0.196 7.196
21 C 0.023 3.977
22 C 0.133 3.867
23 H 0.267 0.733
24 H 0.082 0.918
25 H 0.082 0.918
26 H 0.072 0.928
27 H 0.094 0.906
28 H 0.047 0.953
29 H 0.084 0.916
30 H 0.103 0.897
31 H 0.069 0.931
32 H 0.110 0.890
33 H 0.046 0.954
34 H 0.100 0.900
35 H 0.094 0.906
36 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.736 -14.675 0.303 17.082
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.516 5.516
2 C -0.130 4.130
3 Si 0.730 3.270
4 H -0.189 1.189
5 H -0.203 1.203
6 H -0.203 1.203
7 C -0.573 4.573
8 H 0.088 0.912
9 C -0.554 4.554
10 S 2.683 3.317
11 O -0.968 6.968
12 O -0.969 6.969
13 N -0.848 5.848
14 C 0.006 3.994
15 C -0.089 4.089
16 N -0.255 5.255
17 C -0.130 4.130
18 C 0.216 3.784
19 F -0.186 7.186
20 F -0.178 7.178
21 C -0.106 4.106
22 C 0.007 3.993
23 H 0.077 0.923
24 H 0.100 0.900
25 H 0.100 0.900
26 H 0.091 0.909
27 H 0.112 0.888
28 H 0.066 0.934
29 H 0.103 0.897
30 H 0.121 0.879
31 H 0.087 0.913
32 H 0.127 0.873
33 H 0.064 0.936
34 H 0.118 0.882
35 H 0.112 0.888
36 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -7.601 -15.066 0.279 16.877
hybrid contribution -0.847 1.758 -0.052 1.951
sum -8.447 -13.308 0.227 15.765
Atomic orbital electron populations
1.69955 1.06297 1.27569 1.47788 1.24924 0.94998 0.99634 0.93398
0.86319 0.80477 0.82114 0.78083 1.18920 1.20307 1.20310 1.20386
0.92800 0.88779 1.55344 0.91220 1.27769 1.10513 1.10701 1.06406
1.06027 0.76807 0.75172 0.73710 1.93469 1.71475 1.86314 1.45521
1.93465 1.71503 1.86273 1.45614 1.58137 1.70821 1.44924 1.10940
1.21435 0.92721 0.99247 0.86032 1.22657 0.97212 0.97056 0.91975
1.61837 1.15142 1.45233 1.03306 1.23237 0.91573 0.97261 1.00901
1.21973 0.93070 0.85143 0.78191 1.92904 1.95345 1.90768 1.39604
1.92996 1.74089 1.58694 1.91994 1.22937 0.97191 0.97195 0.93271
1.21339 0.92906 0.99372 0.85726 0.92293 0.90023 0.89997 0.90930
0.88759 0.93435 0.89747 0.87914 0.91290 0.87304 0.93551 0.88209
0.88807 0.91020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -24.63 13.29 55.43 0.74 -23.89 16
2 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16
3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16
4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
7 C -0.53 -14.72 9.13 -34.44 -0.31 -15.03 16
8 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16
9 C -0.42 -10.04 5.93 36.01 0.21 -9.83 16
10 S 2.58 55.74 5.34 -107.50 -0.57 55.17 16
11 O -0.98 -23.33 16.79 -57.54 -0.97 -24.30 16
12 O -0.98 -23.15 16.78 -57.54 -0.97 -24.12 16
13 N -1.01 -17.29 3.25 -112.97 -0.37 -17.65 16
14 C 0.13 1.90 6.50 -3.36 -0.02 1.88 16
15 C 0.04 0.48 5.60 -3.46 -0.02 0.46 16
16 N -0.53 -6.35 4.37 -234.02 -1.02 -7.37 16
17 C 0.00 0.00 5.39 -3.82 -0.02 -0.02 16
18 C 0.27 2.28 5.59 37.16 0.21 2.48 16
19 F -0.20 -2.20 14.67 2.25 0.03 -2.16 16
20 F -0.20 -2.20 17.15 2.25 0.04 -2.16 16
21 C 0.02 0.30 5.40 -3.70 -0.02 0.28 16
22 C 0.13 2.01 6.46 -3.61 -0.02 1.99 16
23 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16
24 H 0.08 1.94 8.14 -51.92 -0.42 1.52 16
25 H 0.08 1.96 8.14 -51.92 -0.42 1.54 16
26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
27 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16
28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
29 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16
30 H 0.10 0.68 7.75 -51.93 -0.40 0.28 16
31 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16
32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16
33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.10 1.23 5.42 -51.93 -0.28 0.95 16
35 H 0.09 1.46 7.19 -51.93 -0.37 1.08 16
36 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16
LS Contribution 314.39 15.07 4.74 4.74
Total: -1.00 -34.11 314.39 -8.22 -42.33
By element:
Atomic # 1 Polarization: 4.10 SS G_CDS: -4.75 Total: -0.65 kcal
Atomic # 6 Polarization: -15.69 SS G_CDS: -0.10 Total: -15.78 kcal
Atomic # 7 Polarization: -48.26 SS G_CDS: -0.65 Total: -48.92 kcal
Atomic # 8 Polarization: -46.49 SS G_CDS: -1.93 Total: -48.42 kcal
Atomic # 9 Polarization: -4.39 SS G_CDS: 0.07 Total: -4.32 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal
Atomic # 16 Polarization: 55.74 SS G_CDS: -0.57 Total: 55.17 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -34.11 -8.22 -42.33 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408193677.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -124.324 kcal
(2) G-P(sol) polarization free energy of solvation -34.105 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds