Wall clock time and date at job start Tue Mar 31 2020 04:08:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 119.99833 * 2 1
4 4 H 1.48498 * 109.47150 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47073 * 300.00435 * 3 2 1
6 6 H 1.48500 * 109.46899 * 59.99827 * 3 2 1
7 7 C 1.37874 * 120.00456 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00475 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99810 * 0.27713 * 7 2 1
10 10 S 1.81402 * 109.47441 * 179.72434 * 9 7 2
11 11 O 1.42105 * 110.54143 * 291.62650 * 10 9 7
12 12 O 1.42101 * 110.54131 * 68.37168 * 10 9 7
13 13 N 1.65595 * 104.45237 * 179.97438 * 10 9 7
14 14 C 1.47078 * 120.88010 * 269.71967 * 13 10 9
15 15 C 1.53705 * 108.27339 * 128.75508 * 14 13 10
16 16 N 1.46892 * 109.25678 * 54.08263 * 15 14 13
17 17 C 1.46897 * 110.99978 * 172.60620 * 16 15 14
18 18 C 1.53013 * 109.47292 * 201.02251 * 17 16 15
19 19 F 1.39901 * 109.46760 * 294.14135 * 18 17 16
20 20 F 1.39896 * 109.46746 * 54.13564 * 18 17 16
21 21 C 1.46895 * 111.27099 * 296.75869 * 16 15 14
22 22 C 1.47076 * 120.87924 * 89.99854 * 13 10 9
23 23 H 0.96998 * 120.00317 * 359.97438 * 1 2 3
24 24 H 1.09001 * 109.47045 * 299.72482 * 9 7 2
25 25 H 1.09002 * 109.47100 * 59.72195 * 9 7 2
26 26 H 1.08994 * 109.63011 * 248.51806 * 14 13 10
27 27 H 1.08992 * 109.63175 * 9.10739 * 14 13 10
28 28 H 1.08997 * 109.64528 * 294.07736 * 15 14 13
29 29 H 1.08996 * 109.41702 * 173.94841 * 15 14 13
30 30 H 1.09003 * 109.47260 * 321.01785 * 17 16 15
31 31 H 1.08995 * 109.47211 * 81.02491 * 17 16 15
32 32 H 1.08997 * 109.46842 * 174.14174 * 18 17 16
33 33 H 1.09004 * 109.49437 * 303.14134 * 21 16 15
34 34 H 1.09006 * 109.49914 * 183.06670 * 21 16 15
35 35 H 1.09000 * 109.63179 * 350.89916 * 22 13 10
36 36 H 1.09008 * 109.63109 * 111.47753 * 22 13 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8902 2.3965 -1.2124
6 1 1.8902 2.3964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0074
10 16 2.4299 -3.8779 -0.0147
11 8 3.1268 -3.9317 -1.2520
12 8 3.1267 -3.9447 1.2220
13 7 1.4797 -5.2340 -0.0211
14 6 1.0520 -5.8621 1.2382
15 6 -0.4723 -6.0533 1.1880
16 7 -0.8275 -6.7966 -0.0282
17 6 -2.2524 -7.1538 -0.0295
18 6 -2.4832 -8.3271 -0.9842
19 9 -2.2201 -7.9193 -2.2963
20 9 -1.6286 -9.3808 -0.6431
21 6 -0.4730 -6.0413 -1.2371
22 6 1.0461 -5.8459 -1.2863
23 1 -0.4850 0.8400 0.0004
24 1 0.6245 -2.5616 0.8822
25 1 0.6245 -2.5522 -0.8977
26 1 1.5418 -6.8293 1.3498
27 1 1.3139 -5.2168 2.0766
28 1 -0.9635 -5.0803 1.1761
29 1 -0.7962 -6.6140 2.0647
30 1 -2.5563 -7.4397 0.9775
31 1 -2.8414 -6.2974 -0.3575
32 1 -3.5185 -8.6595 -0.9076
33 1 -0.9642 -5.0684 -1.2153
34 1 -0.7975 -6.5932 -2.1193
35 1 1.3042 -5.1900 -2.1177
36 1 1.5355 -6.8117 -1.4127
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000408193677.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:08:29
Heat of formation + Delta-G solvation = -192.715763 kcal
Electronic energy + Delta-G solvation = -23308.454110 eV
Core-core repulsion = 19396.438173 eV
Total energy + Delta-G solvation = -3912.015938 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 298.095 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-49.73623 -47.75088 -39.88376 -38.07609 -36.89475 -35.80476 -35.43565 -32.13197
-31.06182 -30.74874 -26.69458 -25.56529 -24.84495 -23.16104 -21.68015 -19.81423
-19.18222 -18.53232 -18.15859 -18.07711 -17.42816 -17.29184 -17.07523 -16.22395
-16.00571 -15.76189 -15.61256 -15.36561 -14.88123 -14.58243 -14.52295 -14.11795
-14.09383 -13.63722 -13.51678 -13.42346 -13.26856 -13.09548 -12.99353 -12.77171
-12.75005 -12.57762 -12.36718 -12.25560 -11.97671 -11.79211 -11.54067 -11.10872
-10.81421 -10.00760 -9.36986 -8.44491 -6.62890 -0.49596 1.35663 1.36489
1.50804 1.86672 2.29417 2.69136 2.89235 3.02138 3.11665 3.33438
3.51641 3.61428 3.72647 4.05243 4.10636 4.20890 4.25437 4.32486
4.47358 4.63221 4.65504 4.66765 4.67976 4.77016 4.81851 4.91218
5.06275 5.08444 5.30710 5.64646 5.68872 5.91346 5.94384 6.47381
7.09287 8.68139
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.023716 B = 0.004328 C = 0.004029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1180.350230 B = 6467.521816 C = 6947.485696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C 0.028 3.972
3 Si 0.962 3.038
4 H -0.264 1.264
5 H -0.266 1.266
6 H -0.265 1.265
7 C -0.568 4.568
8 H 0.062 0.938
9 C -0.426 4.426
10 S 2.614 3.386
11 O -1.001 7.001
12 O -0.999 6.999
13 N -1.007 6.007
14 C 0.121 3.879
15 C 0.045 3.955
16 N -0.540 5.540
17 C -0.003 4.003
18 C 0.264 3.736
19 F -0.221 7.221
20 F -0.214 7.214
21 C 0.030 3.970
22 C 0.125 3.875
23 H 0.274 0.726
24 H 0.078 0.922
25 H 0.075 0.925
26 H 0.086 0.914
27 H 0.089 0.911
28 H 0.037 0.963
29 H 0.118 0.882
30 H 0.130 0.870
31 H 0.075 0.925
32 H 0.156 0.844
33 H 0.035 0.965
34 H 0.110 0.890
35 H 0.084 0.916
36 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.806 -15.499 0.785 18.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.175 4.175
3 Si 0.785 3.215
4 H -0.188 1.188
5 H -0.191 1.191
6 H -0.190 1.190
7 C -0.607 4.607
8 H 0.080 0.920
9 C -0.560 4.560
10 S 2.714 3.286
11 O -0.992 6.992
12 O -0.989 6.989
13 N -0.845 5.845
14 C -0.004 4.004
15 C -0.084 4.084
16 N -0.264 5.264
17 C -0.132 4.132
18 C 0.210 3.790
19 F -0.203 7.203
20 F -0.195 7.195
21 C -0.099 4.099
22 C 0.000 4.000
23 H 0.083 0.917
24 H 0.096 0.904
25 H 0.093 0.907
26 H 0.104 0.896
27 H 0.107 0.893
28 H 0.055 0.945
29 H 0.136 0.864
30 H 0.148 0.852
31 H 0.093 0.907
32 H 0.173 0.827
33 H 0.053 0.947
34 H 0.128 0.872
35 H 0.103 0.897
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -8.688 -15.881 0.764 18.119
hybrid contribution -0.566 1.903 -0.192 1.995
sum -9.255 -13.978 0.572 16.774
Atomic orbital electron populations
1.70020 1.07479 1.28814 1.48065 1.25797 0.95939 1.03027 0.92734
0.85432 0.79149 0.78045 0.78899 1.18807 1.19115 1.18977 1.20787
0.92967 0.90844 1.56109 0.91977 1.27794 1.11010 1.11444 1.05755
1.04760 0.76200 0.75074 0.72565 1.93427 1.72303 1.86842 1.46617
1.93426 1.72215 1.86758 1.46522 1.57781 1.70517 1.43288 1.12924
1.21743 0.94937 0.99339 0.84383 1.22644 0.95030 0.97319 0.93434
1.61838 1.17698 1.44466 1.02436 1.23425 0.89405 0.97634 1.02719
1.22499 0.94831 0.84585 0.77091 1.92868 1.95558 1.90927 1.40898
1.92961 1.74979 1.59496 1.92074 1.22828 0.95317 0.97119 0.94668
1.21546 0.94732 0.99304 0.84423 0.91691 0.90388 0.90678 0.89580
0.89269 0.94463 0.86423 0.85243 0.90658 0.82708 0.94652 0.87208
0.89726 0.89955
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.15 13.29 21.45 0.28 -50.87 16
2 C 0.03 1.56 5.46 84.65 0.46 2.03 16
3 Si 0.96 42.61 29.54 68.60 2.03 44.63 16
4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16
5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
7 C -0.57 -32.01 9.13 25.60 0.23 -31.78 16
8 H 0.06 3.48 7.71 -2.91 -0.02 3.46 16
9 C -0.43 -21.05 5.93 71.24 0.42 -20.63 16
10 S 2.61 114.75 5.34 -56.49 -0.30 114.45 16
11 O -1.00 -48.61 16.79 -127.65 -2.14 -50.75 16
12 O -1.00 -47.75 16.78 -127.65 -2.14 -49.89 16
13 N -1.01 -34.13 3.25 -511.34 -1.66 -35.80 16
14 C 0.12 3.35 6.50 86.51 0.56 3.92 16
15 C 0.04 0.98 5.60 86.54 0.48 1.47 16
16 N -0.54 -11.74 4.37 -894.31 -3.91 -15.65 16
17 C 0.00 -0.05 5.39 86.31 0.46 0.42 16
18 C 0.26 3.66 5.59 71.99 0.40 4.06 16
19 F -0.22 -4.31 14.67 44.97 0.66 -3.65 16
20 F -0.21 -4.26 17.15 44.97 0.77 -3.49 16
21 C 0.03 0.76 5.40 86.38 0.47 1.23 16
22 C 0.13 3.76 6.46 86.35 0.56 4.31 16
23 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16
24 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16
25 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16
26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
27 H 0.09 2.56 7.18 -2.39 -0.02 2.54 16
28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16
29 H 0.12 1.82 7.89 -2.39 -0.02 1.80 16
30 H 0.13 1.17 7.75 -2.39 -0.02 1.15 16
31 H 0.08 1.03 7.98 -2.39 -0.02 1.01 16
32 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16
33 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16
34 H 0.11 2.58 5.42 -2.38 -0.01 2.57 16
35 H 0.08 2.67 7.19 -2.39 -0.02 2.65 16
36 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16
Total: -1.00 -73.27 314.39 -1.28 -74.55
By element:
Atomic # 1 Polarization: 10.35 SS G_CDS: 1.09 Total: 11.44 kcal
Atomic # 6 Polarization: -39.04 SS G_CDS: 4.06 Total: -34.98 kcal
Atomic # 7 Polarization: -97.02 SS G_CDS: -5.29 Total: -102.31 kcal
Atomic # 8 Polarization: -96.36 SS G_CDS: -4.29 Total: -100.64 kcal
Atomic # 9 Polarization: -8.57 SS G_CDS: 1.43 Total: -7.14 kcal
Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal
Atomic # 16 Polarization: 114.75 SS G_CDS: -0.30 Total: 114.45 kcal
Total: -73.27 -1.28 -74.55 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408193677.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.170 kcal
(2) G-P(sol) polarization free energy of solvation -73.270 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) -192.716 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds