Wall clock time and date at job start Tue Mar 31 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48508 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47472 * 299.99523 * 3 2 1 6 6 H 1.48504 * 109.47410 * 59.99952 * 3 2 1 7 7 C 1.39931 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99921 * 197.89743 * 7 2 1 9 9 C 1.41437 * 120.00102 * 17.89082 * 7 2 1 10 10 C 1.40786 * 120.17437 * 204.43903 * 9 7 2 11 11 C 1.37719 * 120.04294 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41420 * 359.74295 * 11 10 9 13 13 C 1.39905 * 120.35305 * 0.51611 * 12 11 10 14 14 C 1.47838 * 120.02489 * 179.76424 * 13 12 11 15 15 O 1.21561 * 119.99615 * 179.72392 * 14 13 12 16 16 N 1.34776 * 119.99883 * 359.72125 * 14 13 12 17 17 C 1.38909 * 119.99641 * 179.97438 * 16 14 13 18 18 N 1.31270 * 126.41589 * 359.97438 * 17 16 14 19 19 N 1.28627 * 110.09825 * 180.21323 * 18 17 16 20 20 C 1.31386 * 109.97603 * 359.68171 * 19 18 17 21 21 N 1.35987 * 145.79349 * 179.97438 * 20 19 18 22 22 C 1.30135 * 110.05752 * 180.33425 * 21 20 19 23 23 N 1.36883 * 109.30318 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.59949 * 180.02562 * 23 22 21 25 25 N 1.36131 * 126.41314 * 180.02562 * 17 16 14 26 26 C 1.39058 * 119.94587 * 359.48514 * 13 12 11 27 27 H 0.97004 * 120.00058 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.98449 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.79269 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.82242 * 180.25893 * 12 11 10 31 31 H 0.97000 * 120.00261 * 0.02562 * 16 14 13 32 32 H 1.08000 * 125.35217 * 180.02562 * 22 21 20 33 33 H 1.07996 * 120.19984 * 180.22705 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2880 9 6 1.3521 -2.4073 -0.3752 10 6 1.8264 -3.6498 0.0865 11 6 1.1860 -4.8122 -0.2815 12 6 0.0718 -4.7689 -1.1008 13 6 -0.4108 -3.5439 -1.5738 14 6 -1.5987 -3.5065 -2.4530 15 8 -2.0206 -2.4414 -2.8596 16 7 -2.2138 -4.6532 -2.8038 17 6 -3.3303 -4.6180 -3.6295 18 7 -3.8904 -3.5449 -4.1373 19 7 -4.9079 -3.8736 -4.8522 20 6 -5.0554 -5.1792 -4.8496 21 7 -5.7941 -6.2284 -5.2997 22 6 -5.3079 -7.3455 -4.8422 23 7 -4.2159 -7.0775 -4.0615 24 1 -3.6637 -7.7260 -3.5974 25 7 -4.0491 -5.6898 -4.0627 26 6 0.2243 -2.3611 -1.2115 27 1 -0.4850 0.8401 -0.0004 28 1 2.6929 -3.6916 0.7296 29 1 1.5530 -5.7632 0.0754 30 1 -0.4255 -5.6861 -1.3801 31 1 -1.8774 -5.5031 -2.4790 32 1 -5.7038 -8.3293 -5.0463 33 1 -0.1469 -1.4129 -1.5712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590379617.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:07 Heat of formation + Delta-G solvation = 169.109647 kcal Electronic energy + Delta-G solvation = -22487.953226 eV Core-core repulsion = 18939.165202 eV Total energy + Delta-G solvation = -3548.788024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.02545 -41.53116 -40.67713 -38.93461 -36.55429 -35.61129 -34.44946 -32.50345 -32.23337 -31.35373 -30.13281 -27.29882 -25.68793 -24.64658 -23.80115 -23.02515 -22.82527 -21.31198 -20.42862 -19.55708 -18.40120 -18.33405 -17.91117 -17.10579 -16.94575 -16.48348 -16.40134 -16.22576 -15.78721 -15.12709 -14.71832 -14.61636 -14.33969 -13.55960 -13.30560 -13.11337 -13.00266 -12.82106 -12.59329 -12.21501 -12.08991 -11.99733 -11.85508 -11.77123 -11.55596 -11.11306 -11.06844 -11.00304 -9.63570 -9.44782 -9.19428 -8.70000 -6.41187 -0.57099 -0.01906 0.28502 0.89267 0.98004 1.24746 1.36598 1.45721 1.52621 1.89276 2.06517 2.17674 2.37642 2.72968 2.84109 3.26559 3.46399 3.64308 3.92559 4.21697 4.29784 4.37217 4.50847 4.86057 4.92033 5.03423 5.11632 5.21425 5.27777 5.44085 5.72610 5.83389 5.95605 5.99475 6.05555 6.25442 6.52005 6.56016 6.83717 6.89816 6.90612 7.41528 8.26525 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.003554 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.894701 B = 7877.604487 C = 8859.059193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.981 3.019 4 H -0.249 1.249 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.087 0.913 9 C 0.069 3.931 10 C -0.211 4.211 11 C -0.090 4.090 12 C -0.197 4.197 13 C -0.129 4.129 14 C 0.566 3.434 15 O -0.524 6.524 16 N -0.615 5.615 17 C 0.422 3.578 18 N -0.274 5.274 19 N -0.310 5.310 20 C 0.339 3.661 21 N -0.512 5.512 22 C 0.406 3.594 23 N -0.469 5.469 24 H 0.476 0.524 25 N -0.368 5.368 26 C -0.127 4.127 27 H 0.287 0.713 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.435 0.565 32 H 0.333 0.667 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -22.425 -4.278 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.172 1.172 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.522 4.522 8 H 0.105 0.895 9 C 0.067 3.933 10 C -0.231 4.231 11 C -0.108 4.108 12 C -0.216 4.216 13 C -0.133 4.133 14 C 0.356 3.644 15 O -0.396 6.396 16 N -0.272 5.272 17 C 0.065 3.935 18 N -0.121 5.121 19 N -0.159 5.159 20 C -0.020 4.020 21 N -0.243 5.243 22 C 0.113 3.887 23 N -0.206 5.206 24 H 0.330 0.670 25 N -0.159 5.159 26 C -0.147 4.147 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.277 0.723 32 H 0.347 0.653 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.305 -19.650 -5.194 21.280 hybrid contribution 1.443 -0.650 1.200 1.986 sum -4.862 -20.300 -3.995 21.252 Atomic orbital electron populations 1.69875 1.09272 1.30690 1.35008 1.26851 0.95361 1.05035 0.91357 0.85174 0.79799 0.76218 0.78680 1.17168 1.19864 1.18919 1.19917 0.98711 0.92081 1.41460 0.89460 1.17912 0.91514 0.94132 0.89771 1.21468 1.03857 0.92622 1.05121 1.20939 0.94958 0.97907 0.96961 1.20827 1.00761 0.94565 1.05486 1.19371 0.95715 0.96280 1.01941 1.19055 0.83336 0.82157 0.79831 1.90864 1.64790 1.30521 1.53380 1.42374 1.24989 1.12192 1.47686 1.20367 0.92674 0.80273 1.00191 1.75271 1.05743 1.18373 1.12680 1.74404 1.14004 1.06298 1.21162 1.24346 0.88856 0.93121 0.95710 1.70697 1.28433 0.95094 1.30061 1.28122 0.78909 1.00459 0.81243 1.45426 1.33063 0.90017 1.52129 0.67028 1.47415 1.27041 1.00092 1.41371 1.21449 0.98270 0.96227 0.98800 0.90265 0.86976 0.83682 0.84116 0.72284 0.65327 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.93 10.96 21.82 0.24 -45.69 16 2 C 0.03 1.52 5.14 85.25 0.44 1.96 16 3 Si 0.98 39.63 29.59 68.60 2.03 41.66 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.49 -26.13 9.05 23.47 0.21 -25.91 16 8 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 10 C -0.21 -9.16 9.78 22.77 0.22 -8.94 16 11 C -0.09 -3.16 10.01 22.18 0.22 -2.94 16 12 C -0.20 -6.85 9.55 22.70 0.22 -6.63 16 13 C -0.13 -5.82 5.87 -20.14 -0.12 -5.94 16 14 C 0.57 25.15 7.73 86.78 0.67 25.82 16 15 O -0.52 -28.76 15.06 -3.91 -0.06 -28.82 16 16 N -0.61 -20.08 5.35 -314.36 -1.68 -21.76 16 17 C 0.42 14.96 8.92 260.08 2.32 17.28 16 18 N -0.27 -12.38 10.43 -57.96 -0.60 -12.98 16 19 N -0.31 -13.03 12.23 -58.85 -0.72 -13.75 16 20 C 0.34 10.65 9.77 260.77 2.55 13.20 16 21 N -0.51 -10.39 11.25 -199.66 -2.25 -12.64 16 22 C 0.41 1.77 13.10 179.77 2.36 4.13 16 23 N -0.47 -3.66 7.50 -59.36 -0.45 -4.10 16 24 H 0.48 -1.10 8.96 -213.53 -1.91 -3.02 16 25 N -0.37 -9.25 4.88 -198.00 -0.97 -10.22 16 26 C -0.13 -6.85 8.24 23.01 0.19 -6.66 16 27 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 28 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.14 3.28 6.38 -2.91 -0.02 3.27 16 31 H 0.44 9.55 6.84 -92.71 -0.63 8.91 16 32 H 0.33 -4.38 8.06 -2.91 -0.02 -4.41 16 33 H 0.10 6.04 5.74 -2.91 -0.02 6.03 16 Total: -1.00 -94.11 299.60 3.38 -90.73 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -1.32 Total: 8.73 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 9.16 Total: 8.84 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -6.43 Total: -121.14 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.06 Total: -28.82 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -94.11 3.38 -90.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590379617.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.842 kcal (2) G-P(sol) polarization free energy of solvation -94.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds