Wall clock time and date at job start Tue Mar 31 2020 04:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86795 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47275 * 239.99914 * 3 2 1 5 5 H 1.48502 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47248 * 119.99665 * 3 2 1 7 7 C 1.40150 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 197.90478 * 7 2 1 9 9 C 1.41041 * 119.99795 * 17.90094 * 7 2 1 10 10 C 1.40928 * 120.10782 * 204.66213 * 9 7 2 11 11 C 1.36268 * 119.88426 * 180.02562 * 10 9 7 12 12 C 1.39986 * 120.11423 * 359.97438 * 11 10 9 13 13 C 1.47835 * 119.88839 * 179.97438 * 12 11 10 14 14 O 1.21968 * 119.99907 * 0.02562 * 13 12 11 15 15 N 1.33568 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.33135 * 120.00062 * 179.97438 * 15 13 12 17 17 N 1.35107 * 126.28375 * 0.03236 * 16 15 13 18 18 H 0.96994 * 126.23208 * 359.85893 * 17 16 15 19 19 N 1.40142 * 107.53699 * 179.64994 * 17 16 15 20 20 C 1.30834 * 108.33852 * 0.20708 * 19 17 16 21 21 N 1.36216 * 144.24055 * 180.02562 * 20 19 17 22 22 C 1.30088 * 110.03712 * 179.97438 * 21 20 19 23 23 N 1.36600 * 109.54731 * 0.02562 * 22 21 20 24 24 H 0.96993 * 126.58025 * 180.02562 * 23 22 21 25 25 N 1.35842 * 126.28727 * 179.97438 * 16 15 13 26 26 C 1.39981 * 120.22501 * 0.25127 * 12 11 10 27 27 C 1.36279 * 120.11253 * 359.48929 * 26 12 11 28 28 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.05638 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.94488 * 179.97438 * 11 10 9 31 31 H 1.07997 * 125.23095 * 179.97438 * 22 21 20 32 32 H 1.08000 * 119.94775 * 179.74374 * 26 12 11 33 33 H 1.08000 * 120.05826 * 180.25076 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6964 1.2125 7 6 2.0077 -1.2137 0.0005 8 1 3.0485 -1.2362 0.2881 9 6 1.3537 -2.4058 -0.3744 10 6 1.8267 -3.6485 0.0923 11 6 1.1917 -4.7974 -0.2732 12 6 0.0709 -4.7447 -1.1103 13 6 -0.6139 -5.9942 -1.5041 14 8 -0.2025 -7.0687 -1.0994 15 7 -1.6837 -5.9464 -2.3024 16 6 -2.3001 -7.0718 -2.6575 17 7 -1.9546 -8.3241 -2.2864 18 1 -1.2105 -8.5676 -1.7139 19 7 -2.8698 -9.2068 -2.8755 20 6 -3.7255 -8.5064 -3.5748 21 7 -4.8238 -8.5841 -4.3768 22 6 -5.1829 -7.3931 -4.7574 23 7 -4.3336 -6.4667 -4.2222 24 1 -4.3746 -5.5056 -4.3456 25 7 -3.3927 -7.1716 -3.4585 26 6 -0.4001 -3.5131 -1.5804 27 6 0.2248 -2.3580 -1.2164 28 1 -0.4850 0.8400 -0.0004 29 1 2.6916 -3.6903 0.7379 30 1 1.5536 -5.7504 0.0836 31 1 -6.0230 -7.1709 -5.3987 32 1 -1.2626 -3.4780 -2.2294 33 1 -0.1418 -1.4081 -1.5764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590379846.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:01 Heat of formation + Delta-G solvation = 200.053859 kcal Electronic energy + Delta-G solvation = -22239.177972 eV Core-core repulsion = 18691.731789 eV Total energy + Delta-G solvation = -3547.446183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.61919 -40.08253 -38.54331 -37.06288 -34.37957 -33.83045 -32.95167 -31.92978 -30.39923 -29.37951 -29.14665 -26.02522 -24.95561 -23.18885 -22.10024 -21.62531 -20.79709 -19.60179 -18.07096 -17.74622 -17.45081 -17.27983 -17.10291 -15.78135 -15.56543 -15.25345 -15.02950 -14.44809 -13.89991 -13.38480 -13.18846 -12.87244 -12.33259 -12.28120 -12.01021 -11.92802 -11.41019 -11.29486 -11.23371 -10.98089 -10.69520 -10.58759 -10.19372 -9.92750 -9.75457 -9.48849 -9.26303 -8.80712 -7.90763 -7.59151 -7.43472 -6.99429 -4.55344 0.27136 0.60360 1.41609 2.22177 2.41427 2.54468 2.94988 2.96734 3.03228 3.06836 3.14997 3.54576 3.75929 4.01551 4.10327 4.53786 4.69765 4.75601 5.29262 5.53972 5.66400 6.25797 6.35759 6.41541 6.47690 6.82329 6.87885 6.92484 7.10411 7.15545 7.22616 7.53148 7.54798 7.76642 7.85329 7.91876 8.02017 8.13166 8.47353 8.67809 8.82492 9.10244 9.91850 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.003142 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.847381 B = 8910.050032 C = 9800.679451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.084 0.916 9 C 0.131 3.869 10 C -0.241 4.241 11 C -0.026 4.026 12 C -0.258 4.258 13 C 0.555 3.445 14 O -0.612 6.612 15 N -0.644 5.644 16 C 0.629 3.371 17 N -0.480 5.480 18 H 0.477 0.523 19 N -0.271 5.271 20 C 0.429 3.571 21 N -0.492 5.492 22 C 0.393 3.607 23 N -0.469 5.469 24 H 0.461 0.539 25 N -0.383 5.383 26 C -0.036 4.036 27 C -0.190 4.190 28 H 0.286 0.714 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.262 0.738 32 H 0.101 0.899 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -5.796 -10.419 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.260 4.260 11 C -0.046 4.046 12 C -0.263 4.263 13 C 0.352 3.648 14 O -0.497 6.497 15 N -0.410 5.410 16 C 0.270 3.730 17 N -0.226 5.226 18 H 0.342 0.658 19 N -0.105 5.105 20 C 0.062 3.938 21 N -0.224 5.224 22 C 0.097 3.903 23 N -0.203 5.203 24 H 0.311 0.689 25 N -0.183 5.183 26 C -0.055 4.055 27 C -0.209 4.209 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.278 0.722 32 H 0.119 0.881 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.831 -7.074 -9.964 17.009 hybrid contribution 0.890 2.083 0.427 2.305 sum -10.941 -4.991 -9.537 15.348 Atomic orbital electron populations 1.69778 1.07889 1.30050 1.31638 1.26096 0.94811 1.01848 0.91966 0.86263 0.80194 0.79477 0.80317 1.18496 1.20071 1.18682 1.19801 0.98405 0.91285 1.37475 0.89784 1.17809 0.90401 0.92071 0.86987 1.20687 1.04649 0.92662 1.08041 1.20391 0.93115 0.97111 0.93948 1.18509 1.03467 0.90738 1.13569 1.19403 0.79752 0.89291 0.76331 1.90353 1.68935 1.31875 1.58524 1.69808 1.20366 1.18285 1.32556 1.19128 0.83275 0.85339 0.85219 1.47794 1.28426 1.00802 1.45585 0.65803 1.77573 1.03532 1.12551 1.16804 1.23485 0.94920 0.78028 0.97397 1.70976 1.11400 1.21848 1.18225 1.26530 0.91583 0.81459 0.90729 1.45006 1.21555 1.09531 1.44219 0.68922 1.45282 1.23433 1.07567 1.42066 1.20602 0.96930 0.91762 0.96236 1.21013 1.00259 0.97046 1.02560 0.90243 0.88449 0.88284 0.72230 0.88097 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.87 10.95 55.56 0.61 -18.27 16 2 C 0.07 1.76 5.13 -17.32 -0.09 1.67 16 3 Si 0.91 17.53 29.60 -169.99 -5.03 12.50 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.44 -11.27 9.04 -37.80 -0.34 -11.61 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 9 C 0.13 3.45 5.57 -106.80 -0.60 2.85 16 10 C -0.24 -6.05 9.73 -39.27 -0.38 -6.44 16 11 C -0.03 -0.65 9.52 -39.64 -0.38 -1.03 16 12 C -0.26 -6.42 5.90 -104.66 -0.62 -7.04 16 13 C 0.55 12.93 7.67 -12.87 -0.10 12.83 16 14 O -0.61 -14.36 13.68 4.95 0.07 -14.29 16 15 N -0.64 -13.13 9.63 -14.12 -0.14 -13.26 16 16 C 0.63 11.01 8.78 -322.15 -2.83 8.18 16 17 N -0.48 -8.18 6.96 29.84 0.21 -7.98 16 18 H 0.48 8.43 6.28 -182.57 -1.15 7.29 16 19 N -0.27 -4.24 12.69 30.09 0.38 -3.86 16 20 C 0.43 5.78 9.69 -320.45 -3.11 2.68 16 21 N -0.49 -4.65 11.26 -14.48 -0.16 -4.81 16 22 C 0.39 1.51 13.08 -89.28 -1.17 0.35 16 23 N -0.47 -3.18 7.50 29.82 0.22 -2.95 16 24 H 0.46 1.77 8.96 -182.53 -1.64 0.13 16 25 N -0.38 -5.07 4.74 -14.46 -0.07 -5.14 16 26 C -0.04 -0.89 9.51 -39.63 -0.38 -1.26 16 27 C -0.19 -4.89 8.63 -39.27 -0.34 -5.23 16 28 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 29 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 30 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 31 H 0.26 -0.94 8.06 -52.49 -0.42 -1.36 16 32 H 0.10 2.28 7.52 -52.49 -0.39 1.89 16 33 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -35.41 299.47 -14.01 -49.42 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.29 Total: 8.18 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -10.32 Total: -4.05 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 1.05 Total: -56.27 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.29 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.41 -14.01 -49.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590379846.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.477 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds