Wall clock time and date at job start Tue Mar 31 2020 03:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47419 * 270.00359 * 3 2 1 5 5 H 1.48506 * 109.46840 * 30.00268 * 3 2 1 6 6 H 1.48499 * 109.47072 * 149.99817 * 3 2 1 7 7 C 1.37874 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99937 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.63872 * 298.31424 * 9 7 2 11 11 C 1.55156 * 110.71850 * 61.45303 * 9 7 2 12 12 C 1.54906 * 101.61451 * 154.02301 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65603 * 125.62776 * 204.14209 * 13 12 11 15 15 O 1.42098 * 106.40266 * 23.45473 * 14 13 12 16 16 O 1.42091 * 106.40130 * 156.37722 * 14 13 12 17 17 C 1.76202 * 107.21592 * 269.91492 * 14 13 12 18 18 C 1.38675 * 120.42017 * 90.00630 * 17 14 13 19 19 C 1.38631 * 118.41983 * 180.02562 * 18 17 14 20 20 C 1.38220 * 119.16381 * 359.97438 * 19 18 17 21 21 N 1.31864 * 120.76131 * 0.02562 * 20 19 18 22 22 C 1.31881 * 121.72697 * 359.70320 * 21 20 19 23 23 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 24 24 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 25 25 H 0.96700 * 113.99657 * 61.68918 * 10 9 7 26 26 H 1.09002 * 111.00677 * 272.11885 * 11 9 7 27 27 H 1.09002 * 111.00564 * 35.93143 * 11 9 7 28 28 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 29 29 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 30 30 H 1.07998 * 120.78657 * 359.97179 * 18 17 14 31 31 H 1.07996 * 120.41394 * 179.97438 * 19 18 17 32 32 H 1.07994 * 119.61945 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.61977 * 180.31392 * 22 21 20 34 34 H 1.08998 * 109.88206 * 239.55467 * 23 13 12 35 35 H 1.09007 * 109.88177 * 118.39340 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 8 0.4504 -2.6185 1.1771 11 6 0.3756 -2.6275 -1.2750 12 6 0.2671 -4.1655 -1.4253 13 7 1.5872 -4.6785 -1.0143 14 16 2.2478 -6.1242 -1.4792 15 8 1.6157 -6.4797 -2.7012 16 8 3.6553 -5.9840 -1.3443 17 6 1.7519 -7.3294 -0.2934 18 6 0.5785 -8.0470 -0.4701 19 6 0.2278 -8.9847 0.4888 20 6 1.0537 -9.1724 1.5811 21 7 2.1625 -8.4718 1.7165 22 6 2.5301 -7.5753 0.8217 23 6 2.2203 -3.6935 -0.1252 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2276 -1.9344 1.2626 26 1 -0.6062 -2.1797 -1.1213 27 1 0.8739 -2.1849 -2.1376 28 1 -0.5120 -4.5566 -0.7709 29 1 0.0618 -4.4319 -2.4621 30 1 -0.0477 -7.8786 -1.3338 31 1 -0.6794 -9.5613 0.3836 32 1 0.7874 -9.9007 2.3327 33 1 3.4478 -7.0242 0.9641 34 1 3.1655 -3.3607 -0.5540 35 1 2.3915 -4.1361 0.8562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592073246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:36 Heat of formation + Delta-G solvation = -78.792707 kcal Electronic energy + Delta-G solvation = -22511.198555 eV Core-core repulsion = 19022.519127 eV Total energy + Delta-G solvation = -3488.679428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21548 -38.12488 -37.09554 -35.70473 -34.35442 -32.81579 -32.22680 -31.63095 -29.20461 -28.35038 -24.88843 -24.15920 -23.86020 -21.67201 -19.86968 -18.98199 -18.03796 -17.45229 -16.94073 -16.69524 -16.68550 -15.29769 -14.97319 -14.65906 -14.44996 -14.29954 -14.10488 -13.40776 -13.31379 -13.13036 -12.75124 -12.19161 -12.14785 -11.96321 -11.90385 -11.69034 -11.36754 -11.26147 -11.10524 -10.86824 -10.52626 -10.47590 -10.34229 -10.13766 -9.74628 -9.64038 -9.37925 -8.68886 -8.51570 -8.22706 -6.29785 -4.37334 0.32892 0.63884 0.98561 3.11309 3.20009 3.27647 3.31971 3.47740 3.90995 4.18630 4.23106 4.27938 4.55724 4.68072 4.89261 4.99065 5.10429 5.34342 5.39522 5.63214 5.73260 5.77732 5.93849 5.95715 6.15167 6.30210 6.32765 6.58438 6.71741 6.89500 6.96568 7.32310 7.35987 7.59172 7.72409 8.00993 8.65228 9.28513 9.37330 10.77738 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.004610 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.704309 B = 6071.857140 C = 6276.608178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.129 4.129 12 C 0.113 3.887 13 N -1.003 6.003 14 S 2.712 3.288 15 O -0.959 6.959 16 O -0.953 6.953 17 C -0.732 4.732 18 C 0.025 3.975 19 C -0.196 4.196 20 C 0.146 3.854 21 N -0.497 5.497 22 C 0.202 3.798 23 C 0.134 3.866 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.079 0.921 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -13.447 -0.301 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.169 4.169 12 C -0.012 4.012 13 N -0.843 5.843 14 S 2.801 3.199 15 O -0.949 6.949 16 O -0.943 6.943 17 C -0.818 4.818 18 C -0.002 4.002 19 C -0.217 4.217 20 C -0.011 4.011 21 N -0.206 5.206 22 C 0.043 3.957 23 C 0.010 3.990 24 H 0.078 0.922 25 H 0.232 0.768 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.097 0.903 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.711 -14.262 -0.187 14.281 hybrid contribution -0.973 1.192 -0.148 1.546 sum -1.684 -13.070 -0.335 13.182 Atomic orbital electron populations 1.69696 1.05968 1.27643 1.50241 1.24982 0.95018 0.99523 0.93464 0.86419 0.79896 0.82411 0.78265 1.20460 1.21094 1.19661 1.21544 0.93775 0.90224 1.51906 0.91616 1.19462 0.86892 0.90458 0.82262 1.86115 1.51872 1.56517 1.45035 1.23282 1.02714 0.90044 1.00882 1.22248 0.82544 0.97900 0.98494 1.58461 1.30229 1.32157 1.63452 1.01397 0.73336 0.71755 0.73430 1.93548 1.77565 1.83324 1.40463 1.93568 1.28301 1.85783 1.86692 1.32359 1.07552 1.22271 1.19602 1.21369 0.92018 0.89789 0.96978 1.22248 1.02206 1.00882 0.96358 1.23146 0.88655 0.94173 0.95090 1.67854 1.16800 1.07028 1.28954 1.22644 0.96557 0.90424 0.86031 1.21921 0.96743 0.88799 0.91566 0.92228 0.76763 0.89425 0.91289 0.92450 0.91270 0.83153 0.83790 0.82014 0.80992 0.90255 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.50 10.67 55.43 0.59 -21.90 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -13.58 8.22 -34.44 -0.28 -13.86 16 8 H 0.07 1.66 7.58 -52.49 -0.40 1.26 16 9 C 0.25 5.79 0.85 -89.94 -0.08 5.71 16 10 O -0.59 -14.05 13.07 -35.23 -0.46 -14.51 16 11 C -0.13 -2.73 5.47 -24.58 -0.13 -2.87 16 12 C 0.11 2.01 7.10 -2.50 -0.02 2.00 16 13 N -1.00 -18.13 3.70 -111.39 -0.41 -18.55 16 14 S 2.71 44.65 5.95 -107.50 -0.64 44.01 16 15 O -0.96 -16.86 16.68 -57.18 -0.95 -17.82 16 16 O -0.95 -17.51 16.88 -57.18 -0.97 -18.47 16 17 C -0.73 -10.54 5.99 -39.44 -0.24 -10.78 16 18 C 0.03 0.31 9.65 -39.28 -0.38 -0.07 16 19 C -0.20 -1.99 10.11 -39.44 -0.40 -2.38 16 20 C 0.15 1.58 11.18 -17.54 -0.20 1.38 16 21 N -0.50 -6.88 10.36 -13.25 -0.14 -7.02 16 22 C 0.20 2.92 10.69 -17.55 -0.19 2.73 16 23 C 0.13 2.74 6.34 -3.07 -0.02 2.72 16 24 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 25 H 0.38 9.24 7.46 45.56 0.34 9.58 16 26 H 0.09 1.92 7.53 -51.93 -0.39 1.53 16 27 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.07 1.12 7.78 -51.93 -0.40 0.71 16 30 H 0.15 1.58 7.71 -52.49 -0.40 1.18 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.17 2.30 7.62 -52.49 -0.40 1.90 16 34 H 0.08 1.62 7.67 -51.93 -0.40 1.22 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -29.87 311.09 -8.63 -38.49 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.30 Total: 9.89 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.02 Total: -13.68 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.04 Total: -47.47 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -2.38 Total: -50.80 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 44.65 SS G_CDS: -0.64 Total: 44.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.87 -8.63 -38.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592073246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.298 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds