Wall clock time and date at job start Tue Mar 31 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48505 * 109.47603 * 240.00073 * 3 2 1 5 5 H 1.48505 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47345 * 119.99684 * 3 2 1 7 7 C 1.37883 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99623 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.77627 * 298.21211 * 9 7 2 11 11 C 1.55156 * 110.72094 * 61.44880 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84557 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65603 * 125.62776 * 204.14209 * 13 12 11 15 15 O 1.42098 * 106.40266 * 23.45473 * 14 13 12 16 16 O 1.42091 * 106.40130 * 156.37722 * 14 13 12 17 17 C 1.76202 * 107.21592 * 269.91492 * 14 13 12 18 18 C 1.38226 * 119.61822 * 269.72672 * 17 14 13 19 19 C 1.38623 * 119.16323 * 179.75968 * 18 17 14 20 20 C 1.38674 * 118.41965 * 0.50670 * 19 18 17 21 21 C 1.38178 * 119.16231 * 359.73450 * 20 19 18 22 22 N 1.31854 * 119.61887 * 90.00528 * 17 14 13 23 23 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 24 24 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 25 25 H 0.96700 * 113.99657 * 61.78848 * 10 9 7 26 26 H 1.09002 * 111.00677 * 271.94141 * 11 9 7 27 27 H 1.09002 * 111.00564 * 35.75399 * 11 9 7 28 28 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 29 29 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 30 30 H 1.08004 * 120.42130 * 359.97438 * 18 17 14 31 31 H 1.08000 * 120.79441 * 180.26823 * 19 18 17 32 32 H 1.08002 * 120.41969 * 179.71080 * 20 19 18 33 33 H 1.08005 * 119.62129 * 179.97438 * 21 20 19 34 34 H 1.08998 * 109.88206 * 239.55467 * 23 13 12 35 35 H 1.09007 * 109.88177 * 118.39340 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1777 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2572 -6.1198 -1.4824 15 8 1.6265 -6.4753 -2.7051 16 8 3.6643 -5.9763 -1.3467 17 6 1.7638 -7.3278 -0.2984 18 6 2.5552 -7.5603 0.8108 19 6 2.1554 -8.5093 1.7388 20 6 0.9747 -9.1997 1.5102 21 6 0.2382 -8.9168 0.3757 22 7 0.6468 -8.0035 -0.4836 23 6 2.2232 -3.6910 -0.1253 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2297 -1.9398 1.2638 26 1 -0.6067 -2.1829 -1.1207 27 1 0.8738 -2.1831 -2.1362 28 1 -0.5068 -4.5599 -0.7732 29 1 0.0675 -4.4316 -2.4640 30 1 3.4716 -7.0072 0.9544 31 1 2.7513 -8.7091 2.6171 32 1 0.6352 -9.9493 2.2097 33 1 -0.6823 -9.4504 0.1901 34 1 3.1677 -3.3553 -0.5532 35 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:22 Heat of formation + Delta-G solvation = -77.626524 kcal Electronic energy + Delta-G solvation = -22515.075822 eV Core-core repulsion = 19026.446963 eV Total energy + Delta-G solvation = -3488.628858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19552 -38.07797 -36.99758 -35.61197 -34.31144 -32.75668 -32.20871 -31.65968 -29.15739 -28.30098 -24.85354 -24.23451 -23.80848 -21.60481 -19.83235 -19.14046 -18.02759 -17.29181 -16.90013 -16.72611 -16.22288 -15.23733 -14.99211 -14.92559 -14.43194 -14.31154 -14.08411 -13.44899 -13.25920 -13.04868 -12.54533 -12.15371 -12.05652 -11.91600 -11.83673 -11.60623 -11.32322 -11.28109 -11.05904 -10.83097 -10.51658 -10.41332 -10.22439 -10.10422 -9.74072 -9.66209 -9.34782 -8.66143 -8.46093 -8.20022 -6.27239 -4.35034 0.34249 0.65694 1.00167 3.09265 3.23232 3.27999 3.31426 3.47960 3.95372 4.04045 4.27454 4.55579 4.62192 4.76344 4.93820 4.97601 5.03402 5.37699 5.41878 5.63168 5.78383 5.83895 6.00067 6.05119 6.24199 6.29414 6.33473 6.64091 6.77049 6.94878 7.02059 7.36857 7.40176 7.49655 7.74627 8.03374 8.67006 9.30758 9.39458 10.80225 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.004622 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.535614 B = 6056.763725 C = 6255.765649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.251 3.749 10 O -0.587 6.587 11 C -0.129 4.129 12 C 0.116 3.884 13 N -0.999 5.999 14 S 2.713 3.287 15 O -0.940 6.940 16 O -0.952 6.952 17 C -0.442 4.442 18 C -0.083 4.083 19 C -0.092 4.092 20 C -0.125 4.125 21 C 0.077 3.923 22 N -0.391 5.391 23 C 0.133 3.867 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -14.010 2.937 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.396 6.396 11 C -0.169 4.169 12 C -0.009 4.009 13 N -0.840 5.840 14 S 2.799 3.201 15 O -0.930 6.930 16 O -0.941 6.941 17 C -0.660 4.660 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.084 4.084 22 N -0.100 5.100 23 C 0.009 3.991 24 H 0.078 0.922 25 H 0.232 0.768 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.098 0.902 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.712 -14.495 1.554 14.596 hybrid contribution 0.148 0.781 1.508 1.705 sum 0.860 -13.715 3.062 14.079 Atomic orbital electron populations 1.69696 1.05962 1.27723 1.50067 1.24984 0.95015 0.99488 0.93480 0.86482 0.79540 0.82104 0.78867 1.20012 1.21182 1.20055 1.21505 0.93699 0.90244 1.52100 0.91683 1.19453 0.86882 0.90390 0.82317 1.86108 1.51703 1.56627 1.45126 1.23286 1.02665 0.90183 1.00783 1.22239 0.82365 0.97471 0.98802 1.58453 1.30384 1.31864 1.63269 1.01665 0.73164 0.71708 0.73537 1.93554 1.77025 1.82711 1.39734 1.93587 1.28059 1.85818 1.86670 1.34111 1.00092 1.16639 1.15135 1.22060 0.99525 0.96336 0.92498 1.21730 0.96335 0.94793 0.99028 1.22437 0.94935 0.98891 0.98185 1.23109 0.99737 0.94904 0.90672 1.67808 1.10922 1.03314 1.28002 1.21938 0.96837 0.88882 0.91461 0.92175 0.76777 0.89428 0.91278 0.92374 0.91119 0.82826 0.83744 0.84007 0.81703 0.90231 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.71 10.69 55.43 0.59 -22.12 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -13.72 8.22 -34.44 -0.28 -14.00 16 8 H 0.06 1.64 7.57 -52.49 -0.40 1.24 16 9 C 0.25 5.90 0.84 -89.94 -0.08 5.83 16 10 O -0.59 -14.24 13.08 -35.23 -0.46 -14.70 16 11 C -0.13 -2.83 5.46 -24.58 -0.13 -2.96 16 12 C 0.12 2.24 7.10 -2.50 -0.02 2.22 16 13 N -1.00 -19.28 3.70 -111.39 -0.41 -19.69 16 14 S 2.71 49.07 6.00 -107.50 -0.65 48.43 16 15 O -0.94 -18.89 17.17 -57.18 -0.98 -19.87 16 16 O -0.95 -18.06 16.83 -57.18 -0.96 -19.02 16 17 C -0.44 -7.12 6.86 -17.55 -0.12 -7.24 16 18 C -0.08 -1.12 9.56 -39.44 -0.38 -1.50 16 19 C -0.09 -0.96 10.18 -39.28 -0.40 -1.36 16 20 C -0.12 -1.19 10.11 -39.44 -0.40 -1.59 16 21 C 0.08 0.90 11.18 -17.55 -0.20 0.71 16 22 N -0.39 -6.18 10.11 -12.45 -0.13 -6.31 16 23 C 0.13 2.79 6.34 -3.07 -0.02 2.77 16 24 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.38 9.34 7.49 45.56 0.34 9.68 16 26 H 0.09 1.98 7.54 -51.93 -0.39 1.59 16 27 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 28 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 29 H 0.07 1.27 7.78 -51.93 -0.40 0.87 16 30 H 0.15 1.86 7.60 -52.48 -0.40 1.46 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.08 1.64 7.66 -51.93 -0.40 1.25 16 35 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -30.81 311.95 -8.74 -39.55 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.31 Total: 9.46 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.12 Total: -15.37 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.05 Total: -48.12 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.41 Total: -53.60 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 49.07 SS G_CDS: -0.65 Total: 48.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.81 -8.74 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.076 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds