Wall clock time and date at job start Tue Mar 31 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48505 * 109.47603 * 240.00073 * 3 2 1 5 5 H 1.48505 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47345 * 119.99684 * 3 2 1 7 7 C 1.37883 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99623 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.77627 * 298.21211 * 9 7 2 11 11 C 1.55156 * 110.72094 * 61.44880 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84557 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65603 * 125.62776 * 204.14209 * 13 12 11 15 15 O 1.42098 * 106.40266 * 23.45473 * 14 13 12 16 16 O 1.42091 * 106.40130 * 156.37722 * 14 13 12 17 17 C 1.76202 * 107.21592 * 269.91492 * 14 13 12 18 18 C 1.38226 * 119.61822 * 269.72672 * 17 14 13 19 19 C 1.38623 * 119.16323 * 179.75968 * 18 17 14 20 20 C 1.38674 * 118.41965 * 0.50670 * 19 18 17 21 21 C 1.38178 * 119.16231 * 359.73450 * 20 19 18 22 22 N 1.31854 * 119.61887 * 90.00528 * 17 14 13 23 23 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 24 24 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 25 25 H 0.96700 * 113.99657 * 61.78848 * 10 9 7 26 26 H 1.09002 * 111.00677 * 271.94141 * 11 9 7 27 27 H 1.09002 * 111.00564 * 35.75399 * 11 9 7 28 28 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 29 29 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 30 30 H 1.08004 * 120.42130 * 359.97438 * 18 17 14 31 31 H 1.08000 * 120.79441 * 180.26823 * 19 18 17 32 32 H 1.08002 * 120.41969 * 179.71080 * 20 19 18 33 33 H 1.08005 * 119.62129 * 179.97438 * 21 20 19 34 34 H 1.08998 * 109.88206 * 239.55467 * 23 13 12 35 35 H 1.09007 * 109.88177 * 118.39340 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1777 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2572 -6.1198 -1.4824 15 8 1.6265 -6.4753 -2.7051 16 8 3.6643 -5.9763 -1.3467 17 6 1.7638 -7.3278 -0.2984 18 6 2.5552 -7.5603 0.8108 19 6 2.1554 -8.5093 1.7388 20 6 0.9747 -9.1997 1.5102 21 6 0.2382 -8.9168 0.3757 22 7 0.6468 -8.0035 -0.4836 23 6 2.2232 -3.6910 -0.1253 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2297 -1.9398 1.2638 26 1 -0.6067 -2.1829 -1.1207 27 1 0.8738 -2.1831 -2.1362 28 1 -0.5068 -4.5599 -0.7732 29 1 0.0675 -4.4316 -2.4640 30 1 3.4716 -7.0072 0.9544 31 1 2.7513 -8.7091 2.6171 32 1 0.6352 -9.9493 2.2097 33 1 -0.6823 -9.4504 0.1901 34 1 3.1677 -3.3553 -0.5532 35 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:22 Heat of formation + Delta-G solvation = -102.380437 kcal Electronic energy + Delta-G solvation = -22516.149232 eV Core-core repulsion = 19026.446963 eV Total energy + Delta-G solvation = -3489.702269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12746 -39.80373 -38.46988 -37.09868 -36.09190 -34.15583 -33.66683 -32.59664 -30.87868 -30.03337 -26.70814 -25.22976 -24.71235 -23.23417 -21.62533 -20.41270 -19.48875 -18.89188 -18.53184 -17.78538 -17.11905 -16.86779 -16.73837 -16.16484 -16.00963 -15.71886 -15.32548 -14.91495 -14.65100 -14.25288 -13.95196 -13.72865 -13.50971 -13.45045 -13.36862 -13.28159 -13.12828 -12.80296 -12.61442 -12.43039 -12.27756 -12.17271 -11.94563 -11.18579 -11.09838 -10.73940 -10.62514 -10.58412 -10.10067 -9.98492 -8.19730 -6.33983 -0.89819 -0.45231 0.13375 1.46720 1.47910 1.54828 1.77283 2.39063 2.42745 2.67377 2.89712 3.06593 3.56437 3.74498 3.83471 3.92746 3.96420 4.09159 4.19087 4.29350 4.42686 4.53883 4.60101 4.66663 4.85427 4.95499 4.99281 5.16036 5.21962 5.32175 5.49978 5.54723 5.56690 5.81327 6.13023 6.54913 6.70133 7.35698 7.43944 8.86044 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.004622 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.535614 B = 6056.763725 C = 6255.765649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.036 3.964 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.237 3.763 10 O -0.590 6.590 11 C -0.123 4.123 12 C 0.122 3.878 13 N -1.004 6.004 14 S 2.726 3.274 15 O -0.968 6.968 16 O -0.969 6.969 17 C -0.468 4.468 18 C -0.096 4.096 19 C -0.091 4.091 20 C -0.102 4.102 21 C 0.065 3.935 22 N -0.430 5.430 23 C 0.138 3.862 24 H 0.270 0.730 25 H 0.378 0.622 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.159 0.841 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.076 0.924 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -15.779 4.600 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.078 0.922 9 C 0.196 3.804 10 O -0.399 6.399 11 C -0.163 4.163 12 C -0.003 4.003 13 N -0.844 5.844 14 S 2.817 3.183 15 O -0.959 6.959 16 O -0.959 6.959 17 C -0.688 4.688 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.096 4.096 22 N -0.141 5.141 23 C 0.013 3.987 24 H 0.079 0.921 25 H 0.228 0.772 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.176 0.824 31 H 0.202 0.798 32 H 0.209 0.791 33 H 0.214 0.786 34 H 0.094 0.906 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.647 -16.217 3.171 16.537 hybrid contribution 0.128 1.166 1.093 1.603 sum 0.775 -15.051 4.264 15.663 Atomic orbital electron populations 1.69770 1.06671 1.28314 1.49932 1.25605 0.95808 1.01986 0.93142 0.85617 0.78455 0.78901 0.78646 1.19971 1.20698 1.19952 1.21784 0.93759 0.91645 1.52872 0.92232 1.19611 0.87414 0.90857 0.82507 1.86094 1.51658 1.56398 1.45707 1.23105 1.01550 0.92006 0.99629 1.22146 0.82792 0.95591 0.99737 1.58396 1.30039 1.32735 1.63196 1.00917 0.72467 0.71495 0.73392 1.93507 1.77383 1.82973 1.42001 1.93551 1.29070 1.86175 1.87084 1.33234 1.02019 1.17610 1.15952 1.22317 0.99529 0.97475 0.92462 1.22268 0.96948 0.93265 0.99238 1.23009 0.93451 0.98235 0.97489 1.23793 1.01034 0.94020 0.90800 1.67706 1.11257 1.05066 1.30070 1.21758 0.96112 0.88595 0.92240 0.92063 0.77237 0.90514 0.92495 0.91691 0.89965 0.82372 0.79787 0.79122 0.78621 0.90575 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.38 10.69 21.45 0.23 -46.15 16 2 C 0.04 1.82 5.28 84.66 0.45 2.27 16 3 Si 0.96 40.98 29.54 68.60 2.03 43.00 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.56 -29.14 8.22 25.60 0.21 -28.93 16 8 H 0.06 3.06 7.57 -2.91 -0.02 3.04 16 9 C 0.24 11.34 0.84 -10.35 -0.01 11.33 16 10 O -0.59 -28.96 13.08 -148.98 -1.95 -30.90 16 11 C -0.12 -5.51 5.46 31.98 0.17 -5.34 16 12 C 0.12 4.78 7.10 86.85 0.62 5.40 16 13 N -1.00 -39.31 3.70 -506.33 -1.87 -41.18 16 14 S 2.73 100.15 6.00 -56.49 -0.34 99.81 16 15 O -0.97 -39.79 17.17 -128.00 -2.20 -41.99 16 16 O -0.97 -37.43 16.83 -128.00 -2.15 -39.59 16 17 C -0.47 -14.77 6.86 84.69 0.58 -14.18 16 18 C -0.10 -2.42 9.56 22.36 0.21 -2.21 16 19 C -0.09 -1.53 10.18 22.47 0.23 -1.30 16 20 C -0.10 -1.46 10.11 22.36 0.23 -1.24 16 21 C 0.07 1.33 11.18 84.67 0.95 2.28 16 22 N -0.43 -13.10 10.11 -193.31 -1.95 -15.06 16 23 C 0.14 5.86 6.34 86.73 0.55 6.40 16 24 H 0.27 13.21 8.31 -92.70 -0.77 12.44 16 25 H 0.38 18.82 7.49 -74.06 -0.55 18.26 16 26 H 0.08 3.56 7.54 -2.39 -0.02 3.54 16 27 H 0.06 2.63 8.04 -2.39 -0.02 2.61 16 28 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.08 3.00 7.78 -2.39 -0.02 2.98 16 30 H 0.16 3.66 7.60 -2.91 -0.02 3.64 16 31 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 33 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.08 3.23 7.66 -2.39 -0.02 3.21 16 35 H 0.07 2.60 8.07 -2.38 -0.02 2.59 16 Total: -1.00 -67.40 311.95 -3.46 -70.86 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.57 Total: 26.71 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.19 Total: -25.51 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -3.60 Total: -102.39 kcal Atomic # 8 Polarization: -106.18 SS G_CDS: -6.30 Total: -112.48 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 100.15 SS G_CDS: -0.34 Total: 99.81 kcal Total: -67.40 -3.46 -70.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.523 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds