Wall clock time and date at job start Tue Mar 31 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47048 * 299.99912 * 3 2 1 6 6 H 1.48495 * 109.47158 * 59.99826 * 3 2 1 7 7 C 1.37877 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99358 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00217 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88707 * 62.43258 * 9 7 2 11 11 C 1.55153 * 111.00845 * 298.54864 * 9 7 2 12 12 C 1.54324 * 102.94370 * 206.42548 * 11 9 7 13 13 N 1.47020 * 107.27272 * 22.19142 * 12 11 9 14 14 S 1.65604 * 125.64815 * 181.02393 * 13 12 11 15 15 O 1.42098 * 106.40021 * 336.48126 * 14 13 12 16 16 O 1.42097 * 106.39652 * 203.56456 * 14 13 12 17 17 C 1.76192 * 107.21657 * 90.02453 * 14 13 12 18 18 C 1.38222 * 119.61910 * 149.99846 * 17 14 13 19 19 C 1.38630 * 119.16715 * 179.97438 * 18 17 14 20 20 C 1.38674 * 118.41731 * 0.02562 * 19 18 17 21 21 C 1.38187 * 119.16260 * 359.97438 * 20 19 18 22 22 N 1.31864 * 119.62254 * 330.25140 * 17 14 13 23 23 C 1.47425 * 108.70192 * 1.28722 * 13 12 11 24 24 H 0.96994 * 120.00358 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99375 * 297.56732 * 10 9 7 26 26 H 1.08999 * 110.72266 * 88.05881 * 11 9 7 27 27 H 1.09000 * 110.87236 * 324.85794 * 11 9 7 28 28 H 1.09005 * 109.87996 * 262.76908 * 12 11 9 29 29 H 1.09001 * 109.88229 * 141.61047 * 12 11 9 30 30 H 1.08003 * 120.41945 * 0.02562 * 18 17 14 31 31 H 1.07997 * 120.79126 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.41840 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.61408 * 179.97438 * 21 20 19 34 34 H 1.08998 * 110.36451 * 94.48104 * 23 13 12 35 35 H 1.08998 * 110.36837 * 216.80506 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 8 0.4608 -2.6322 -1.1815 11 6 0.3741 -2.6339 1.2744 12 6 0.2590 -4.1622 1.4547 13 7 1.3947 -4.7719 0.7475 14 16 1.6987 -6.3955 0.6291 15 8 1.0447 -7.0077 1.7321 16 8 3.0920 -6.5256 0.3817 17 6 0.8799 -6.9751 -0.8193 18 6 1.4045 -8.0460 -1.5184 19 6 0.7523 -8.4947 -2.6564 20 6 -0.4083 -7.8461 -3.0509 21 6 -0.8730 -6.7821 -2.3016 22 7 -0.2235 -6.3792 -1.2268 23 6 2.2214 -3.6983 0.1667 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2252 -1.9570 -1.2741 26 1 -0.6083 -2.1893 1.1147 27 1 0.8659 -2.1801 2.1348 28 1 -0.6784 -4.5165 1.0257 29 1 0.3031 -4.4149 2.5141 30 1 2.3106 -8.5277 -1.1817 31 1 1.1388 -9.3294 -3.2222 32 1 -0.9421 -8.1685 -3.9326 33 1 -1.7759 -6.2715 -2.6024 34 1 3.0364 -3.4395 0.8425 35 1 2.6140 -4.0043 -0.8029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:25 Heat of formation + Delta-G solvation = -76.880140 kcal Electronic energy + Delta-G solvation = -22707.315748 eV Core-core repulsion = 19218.719255 eV Total energy + Delta-G solvation = -3488.596493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09469 -37.96943 -36.95567 -35.66746 -34.19405 -32.68239 -32.15647 -31.57585 -29.14970 -28.19601 -24.83839 -24.16437 -23.73436 -21.43178 -19.78107 -19.08762 -17.99737 -17.27456 -16.87696 -16.39792 -16.17249 -15.41580 -14.92865 -14.85706 -14.48202 -14.06100 -13.97246 -13.40487 -13.26115 -12.85894 -12.57702 -12.34534 -11.96211 -11.86315 -11.80456 -11.71449 -11.28016 -11.22550 -10.99243 -10.72772 -10.44105 -10.38145 -10.13667 -9.92811 -9.62796 -9.56058 -9.32743 -8.65383 -8.28686 -8.11487 -6.23622 -4.31382 0.51479 0.67904 1.09146 3.08485 3.21224 3.30411 3.35001 3.47787 3.85757 4.29550 4.36432 4.63874 4.70625 4.83283 4.92929 5.03447 5.05333 5.42923 5.48282 5.68810 5.85334 5.92238 6.06869 6.10903 6.30685 6.39464 6.45152 6.67307 6.85961 7.03122 7.12002 7.41775 7.46427 7.62852 7.78881 8.09622 8.71303 9.36746 9.46860 10.83514 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.005074 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.955464 B = 5516.850413 C = 6005.706244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.130 4.130 12 C 0.124 3.876 13 N -0.986 5.986 14 S 2.716 3.284 15 O -0.955 6.955 16 O -0.954 6.954 17 C -0.435 4.435 18 C -0.094 4.094 19 C -0.092 4.092 20 C -0.128 4.128 21 C 0.086 3.914 22 N -0.381 5.381 23 C 0.137 3.863 24 H 0.266 0.734 25 H 0.379 0.621 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -12.834 -3.830 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.387 6.387 11 C -0.170 4.170 12 C -0.001 4.001 13 N -0.827 5.827 14 S 2.802 3.198 15 O -0.945 6.945 16 O -0.944 6.944 17 C -0.653 4.653 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.148 4.148 21 C -0.075 4.075 22 N -0.090 5.090 23 C 0.013 3.987 24 H 0.076 0.924 25 H 0.228 0.772 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.095 0.905 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.329 -13.151 -2.887 13.529 hybrid contribution -0.148 0.669 -1.268 1.442 sum -1.477 -12.482 -4.155 13.238 Atomic orbital electron populations 1.69736 1.05921 1.27371 1.50303 1.24977 0.94977 0.99404 0.93610 0.86405 0.80196 0.82968 0.77608 1.19626 1.20937 1.20897 1.21534 0.93757 0.90347 1.51712 0.91717 1.19622 0.86932 0.90271 0.82151 1.86127 1.51372 1.56825 1.44358 1.23141 1.02879 0.90170 1.00841 1.21876 0.87425 0.96434 0.94341 1.58099 1.37391 1.21020 1.66177 1.01553 0.73185 0.71789 0.73271 1.93578 1.76937 1.75350 1.48602 1.93591 1.28817 1.85893 1.86137 1.34090 1.04943 1.04300 1.21976 1.21860 0.99505 0.95101 0.95029 1.21648 0.94931 0.99438 0.95886 1.22420 0.96284 0.96002 1.00119 1.23123 0.99318 0.94006 0.91041 1.67902 1.03802 1.24296 1.13024 1.22226 0.93290 0.86459 0.96755 0.92392 0.77180 0.89709 0.91545 0.91996 0.92674 0.83572 0.83943 0.84103 0.81662 0.90476 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.80 10.76 55.43 0.60 -22.20 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.70 8.27 -34.44 -0.28 -13.99 16 8 H 0.06 1.65 7.79 -52.48 -0.41 1.24 16 9 C 0.25 5.96 0.87 -89.51 -0.08 5.88 16 10 O -0.58 -14.21 13.17 -35.23 -0.46 -14.67 16 11 C -0.13 -2.85 5.37 -24.90 -0.13 -2.98 16 12 C 0.12 2.42 6.99 -3.06 -0.02 2.39 16 13 N -0.99 -19.45 3.63 -111.29 -0.40 -19.85 16 14 S 2.72 49.63 5.91 -107.50 -0.63 48.99 16 15 O -0.95 -18.80 17.60 -57.17 -1.01 -19.80 16 16 O -0.95 -18.36 17.23 -57.17 -0.99 -19.34 16 17 C -0.43 -7.27 6.77 -17.54 -0.12 -7.39 16 18 C -0.09 -1.27 9.57 -39.44 -0.38 -1.65 16 19 C -0.09 -0.99 10.18 -39.28 -0.40 -1.39 16 20 C -0.13 -1.34 10.11 -39.44 -0.40 -1.74 16 21 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 22 N -0.38 -6.45 10.23 -12.45 -0.13 -6.58 16 23 C 0.14 2.93 6.17 -2.41 -0.01 2.92 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.38 9.40 7.56 45.56 0.34 9.74 16 26 H 0.08 1.93 7.55 -51.93 -0.39 1.54 16 27 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.15 1.65 7.94 -52.48 -0.42 1.23 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -30.83 313.98 -8.81 -39.64 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.38 Total: 9.30 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.12 Total: -15.24 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.06 Total: -48.64 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -2.46 Total: -53.82 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.63 Total: 48.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.83 -8.81 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.236 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds