Wall clock time and date at job start Tue Mar 31 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47048 * 299.99912 * 3 2 1 6 6 H 1.48495 * 109.47158 * 59.99826 * 3 2 1 7 7 C 1.37877 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99358 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00217 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88707 * 62.43258 * 9 7 2 11 11 C 1.55153 * 111.00845 * 298.54864 * 9 7 2 12 12 C 1.54324 * 102.94370 * 206.42548 * 11 9 7 13 13 N 1.47020 * 107.27272 * 22.19142 * 12 11 9 14 14 S 1.65604 * 125.64815 * 181.02393 * 13 12 11 15 15 O 1.42098 * 106.40021 * 336.48126 * 14 13 12 16 16 O 1.42097 * 106.39652 * 203.56456 * 14 13 12 17 17 C 1.76192 * 107.21657 * 90.02453 * 14 13 12 18 18 C 1.38222 * 119.61910 * 149.99846 * 17 14 13 19 19 C 1.38630 * 119.16715 * 179.97438 * 18 17 14 20 20 C 1.38674 * 118.41731 * 0.02562 * 19 18 17 21 21 C 1.38187 * 119.16260 * 359.97438 * 20 19 18 22 22 N 1.31864 * 119.62254 * 330.25140 * 17 14 13 23 23 C 1.47425 * 108.70192 * 1.28722 * 13 12 11 24 24 H 0.96994 * 120.00358 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99375 * 297.56732 * 10 9 7 26 26 H 1.08999 * 110.72266 * 88.05881 * 11 9 7 27 27 H 1.09000 * 110.87236 * 324.85794 * 11 9 7 28 28 H 1.09005 * 109.87996 * 262.76908 * 12 11 9 29 29 H 1.09001 * 109.88229 * 141.61047 * 12 11 9 30 30 H 1.08003 * 120.41945 * 0.02562 * 18 17 14 31 31 H 1.07997 * 120.79126 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.41840 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.61408 * 179.97438 * 21 20 19 34 34 H 1.08998 * 110.36451 * 94.48104 * 23 13 12 35 35 H 1.08998 * 110.36837 * 216.80506 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 8 0.4608 -2.6322 -1.1815 11 6 0.3741 -2.6339 1.2744 12 6 0.2590 -4.1622 1.4547 13 7 1.3947 -4.7719 0.7475 14 16 1.6987 -6.3955 0.6291 15 8 1.0447 -7.0077 1.7321 16 8 3.0920 -6.5256 0.3817 17 6 0.8799 -6.9751 -0.8193 18 6 1.4045 -8.0460 -1.5184 19 6 0.7523 -8.4947 -2.6564 20 6 -0.4083 -7.8461 -3.0509 21 6 -0.8730 -6.7821 -2.3016 22 7 -0.2235 -6.3792 -1.2268 23 6 2.2214 -3.6983 0.1667 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2252 -1.9570 -1.2741 26 1 -0.6083 -2.1893 1.1147 27 1 0.8659 -2.1801 2.1348 28 1 -0.6784 -4.5165 1.0257 29 1 0.3031 -4.4149 2.5141 30 1 2.3106 -8.5277 -1.1817 31 1 1.1388 -9.3294 -3.2222 32 1 -0.9421 -8.1685 -3.9326 33 1 -1.7759 -6.2715 -2.6024 34 1 3.0364 -3.4395 0.8425 35 1 2.6140 -4.0043 -0.8029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:24 Heat of formation + Delta-G solvation = -101.672227 kcal Electronic energy + Delta-G solvation = -22708.390814 eV Core-core repulsion = 19218.719255 eV Total energy + Delta-G solvation = -3489.671558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.08306 -39.70973 -38.43654 -37.15494 -35.99362 -34.11737 -33.64967 -32.56651 -30.88141 -29.94581 -26.70280 -25.20208 -24.72200 -23.05784 -21.59726 -20.39741 -19.46305 -18.80350 -18.55129 -17.57327 -17.13919 -16.89780 -16.77563 -16.22927 -15.95884 -15.64239 -15.19190 -14.96446 -14.52451 -14.22784 -14.08801 -13.64033 -13.56834 -13.45212 -13.41144 -13.30933 -13.11390 -12.76965 -12.54797 -12.39852 -12.21800 -12.13145 -11.77546 -11.17651 -11.06931 -10.69202 -10.57702 -10.56013 -10.02746 -9.85312 -8.17013 -6.31380 -0.78669 -0.42411 0.17495 1.43936 1.48362 1.57869 1.66754 2.42204 2.44349 2.54425 3.07577 3.23770 3.49484 3.75046 3.84571 3.93199 3.99300 4.20023 4.21224 4.33631 4.47230 4.54430 4.61599 4.76826 4.85800 4.97271 5.00207 5.23377 5.28485 5.43295 5.52947 5.55934 5.63344 5.85621 6.18134 6.61285 6.73348 7.39576 7.50323 8.88706 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.005074 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.955464 B = 5516.850413 C = 6005.706244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.036 3.964 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.239 3.761 10 O -0.583 6.583 11 C -0.121 4.121 12 C 0.128 3.872 13 N -0.993 5.993 14 S 2.730 3.270 15 O -0.975 6.975 16 O -0.971 6.971 17 C -0.466 4.466 18 C -0.104 4.104 19 C -0.087 4.087 20 C -0.108 4.108 21 C 0.065 3.935 22 N -0.422 5.422 23 C 0.141 3.859 24 H 0.269 0.731 25 H 0.374 0.626 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.188 0.812 33 H 0.185 0.815 34 H 0.081 0.919 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -14.195 -5.387 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.198 3.802 10 O -0.391 6.391 11 C -0.161 4.161 12 C 0.004 3.996 13 N -0.832 5.832 14 S 2.821 3.179 15 O -0.966 6.966 16 O -0.961 6.961 17 C -0.686 4.686 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.096 4.096 22 N -0.133 5.133 23 C 0.016 3.984 24 H 0.078 0.922 25 H 0.223 0.777 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.180 0.820 31 H 0.206 0.794 32 H 0.206 0.794 33 H 0.202 0.798 34 H 0.099 0.901 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.508 -14.498 -4.390 15.223 hybrid contribution -0.156 0.995 -0.921 1.365 sum -1.664 -13.503 -5.311 14.605 Atomic orbital electron populations 1.69810 1.06660 1.28041 1.50154 1.25590 0.95758 1.01898 0.93262 0.85522 0.78978 0.79596 0.77530 1.19684 1.20787 1.20489 1.21779 0.93719 0.91696 1.52512 0.92378 1.19772 0.87459 0.90594 0.82380 1.86122 1.51307 1.56561 1.45083 1.22944 1.01596 0.91806 0.99758 1.21807 0.87681 0.94747 0.95404 1.58059 1.37131 1.21379 1.66651 1.00845 0.72737 0.70882 0.73479 1.93541 1.77177 1.75304 1.50549 1.93557 1.30108 1.85849 1.86592 1.33379 1.06278 1.06619 1.22332 1.22240 1.00259 0.94227 0.95831 1.22229 0.94375 1.00048 0.94660 1.22949 0.95680 0.93782 1.00296 1.23655 0.99970 0.95370 0.90630 1.67779 1.04552 1.25796 1.15160 1.22065 0.93125 0.86326 0.96838 0.92201 0.77743 0.91053 0.92201 0.91674 0.91053 0.82037 0.79404 0.79431 0.79771 0.90076 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.60 10.76 21.45 0.23 -46.37 16 2 C 0.04 1.84 5.29 84.65 0.45 2.29 16 3 Si 0.96 41.13 29.54 68.60 2.03 43.15 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.56 -29.03 8.27 25.60 0.21 -28.82 16 8 H 0.06 3.01 7.79 -2.91 -0.02 2.99 16 9 C 0.24 11.54 0.87 -10.07 -0.01 11.53 16 10 O -0.58 -29.22 13.17 -148.98 -1.96 -31.18 16 11 C -0.12 -5.41 5.37 31.78 0.17 -5.24 16 12 C 0.13 5.07 6.99 86.73 0.61 5.68 16 13 N -0.99 -39.74 3.63 -506.01 -1.84 -41.58 16 14 S 2.73 100.66 5.91 -56.49 -0.33 100.33 16 15 O -0.98 -38.81 17.60 -128.00 -2.25 -41.06 16 16 O -0.97 -37.62 17.23 -128.00 -2.21 -39.82 16 17 C -0.47 -15.30 6.77 84.68 0.57 -14.73 16 18 C -0.10 -2.60 9.57 22.36 0.21 -2.39 16 19 C -0.09 -1.49 10.18 22.47 0.23 -1.27 16 20 C -0.11 -1.79 10.11 22.36 0.23 -1.56 16 21 C 0.07 1.59 11.18 84.67 0.95 2.53 16 22 N -0.42 -14.09 10.23 -193.32 -1.98 -16.06 16 23 C 0.14 6.17 6.17 86.93 0.54 6.71 16 24 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 25 H 0.37 19.03 7.56 -74.06 -0.56 18.47 16 26 H 0.07 3.33 7.55 -2.39 -0.02 3.32 16 27 H 0.06 2.69 8.04 -2.39 -0.02 2.67 16 28 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 30 H 0.16 3.35 7.94 -2.91 -0.02 3.33 16 31 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.08 3.40 8.03 -2.39 -0.02 3.38 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -67.13 313.98 -3.60 -70.73 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.56 Total: 27.13 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.15 Total: -25.27 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.59 Total: -104.01 kcal Atomic # 8 Polarization: -105.64 SS G_CDS: -6.42 Total: -112.06 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 100.66 SS G_CDS: -0.33 Total: 100.33 kcal Total: -67.13 -3.60 -70.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.941 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds