Wall clock time and date at job start Tue Mar 31 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99619 * 2 1 4 4 C 1.50696 * 109.46715 * 179.97438 * 3 2 1 5 5 C 1.33821 * 122.45310 * 269.97870 * 4 3 2 6 6 S 1.70615 * 110.95828 * 179.78543 * 5 4 3 7 7 C 1.75832 * 91.56061 * 0.30349 * 6 5 4 8 8 C 1.46586 * 125.45805 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00258 * 179.69574 * 8 7 6 10 10 N 1.34774 * 119.99696 * 359.69758 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99571 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.37091 * 119.99763 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00286 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00028 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99825 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99886 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99696 * 19 17 15 23 23 C 1.36644 * 109.08722 * 359.69822 * 7 6 5 24 24 H 1.08998 * 109.47024 * 59.99929 * 1 2 3 25 25 H 1.08998 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47031 * 299.99759 * 1 2 3 27 27 H 1.09001 * 109.46744 * 60.00038 * 3 2 1 28 28 H 1.09000 * 109.47129 * 299.99755 * 3 2 1 29 29 H 1.08007 * 124.51687 * 0.02562 * 5 4 3 30 30 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 32 32 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 33 33 H 0.96998 * 120.00166 * 0.02562 * 14 12 11 34 34 H 0.96996 * 120.00054 * 180.02562 * 18 17 15 35 35 H 1.07997 * 123.35751 * 180.24134 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2279 1.1304 1.1302 6 16 5.8943 0.9923 0.7909 7 6 5.5931 1.0220 -0.9412 8 6 6.6196 0.9397 -1.9843 9 8 6.2981 0.9640 -3.1578 10 7 7.9196 0.8370 -1.6438 11 6 8.9456 0.7542 -2.6863 12 6 10.3055 0.6478 -2.0455 13 8 10.4075 0.6413 -0.8370 14 7 11.4081 0.5588 -2.8155 15 6 12.6451 0.4626 -2.2326 16 1 12.7362 0.4577 -1.1564 17 6 13.7820 0.3714 -3.0263 18 7 13.6714 0.3779 -4.3357 19 14 15.4676 0.2396 -2.2320 20 1 15.8040 -1.1911 -2.0191 21 1 16.4832 0.8600 -3.1202 22 1 15.4556 0.9450 -0.9254 23 6 4.2483 1.1280 -1.1592 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8063 1.1640 2.1240 30 1 8.1760 0.8180 -0.7085 31 1 8.7651 -0.1252 -3.3047 32 1 8.9059 1.6492 -3.3072 33 1 11.3264 0.5636 -3.7820 34 1 14.4649 0.3138 -4.8898 35 1 3.8073 1.1622 -2.1444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597650810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:41 Heat of formation + Delta-G solvation = -86.548625 kcal Electronic energy + Delta-G solvation = -20351.645965 eV Core-core repulsion = 16862.630215 eV Total energy + Delta-G solvation = -3489.015750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77953 -38.90700 -38.10117 -37.02051 -34.49734 -33.71801 -31.42688 -30.85924 -28.29409 -27.66000 -26.08891 -24.92192 -23.57264 -20.61283 -19.75779 -19.14668 -18.58224 -18.00308 -16.74734 -16.65898 -16.01471 -15.63262 -15.50059 -15.35932 -15.17370 -14.47761 -14.15513 -14.01545 -13.64503 -13.35495 -13.23541 -12.95163 -12.38460 -12.24571 -12.21856 -11.96855 -11.67166 -11.63884 -11.13432 -11.02033 -10.46701 -10.33288 -10.05373 -9.98344 -9.65214 -9.10284 -8.82843 -8.68749 -8.66240 -8.11857 -6.52734 -3.94787 0.39070 1.33381 1.71908 2.06776 3.10880 3.19678 3.22915 3.24979 3.30357 3.71697 3.74540 4.10204 4.63604 4.65899 4.83631 4.88725 4.96281 5.02195 5.06578 5.08068 5.15668 5.32735 5.34963 5.68577 5.87092 5.92188 6.03414 6.07164 6.14125 6.55677 6.78667 7.44984 7.67548 7.90086 8.29435 8.43519 9.03012 9.37236 9.84914 10.64065 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.044003 B = 0.002500 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.171380 B =11197.049368 C =11678.872246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.124 3.876 4 C -0.125 4.125 5 C -0.218 4.218 6 S 0.231 5.769 7 C -0.261 4.261 8 C 0.588 3.412 9 O -0.536 6.536 10 N -0.703 5.703 11 C 0.109 3.891 12 C 0.427 3.573 13 O -0.597 6.597 14 N -0.547 5.547 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.268 1.268 23 C -0.043 4.043 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.169 0.831 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 2.194 8.240 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.045 3.955 4 C -0.138 4.138 5 C -0.356 4.356 6 S 0.500 5.500 7 C -0.382 4.382 8 C 0.373 3.627 9 O -0.416 6.416 10 N -0.356 5.356 11 C -0.018 4.018 12 C 0.213 3.787 13 O -0.484 6.484 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.076 4.076 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.187 0.813 30 H 0.247 0.753 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.346 1.918 8.959 22.314 hybrid contribution -0.626 0.237 -0.664 0.943 sum -20.972 2.156 8.295 22.655 Atomic orbital electron populations 1.22762 0.80945 1.02926 0.99987 1.87996 1.19583 1.27482 1.95398 1.20997 0.88389 0.85043 1.01029 1.18380 0.95739 1.07711 0.91995 1.25269 0.99392 1.07625 1.03321 1.83393 1.02856 1.65630 0.98110 1.24605 0.98032 1.18102 0.97423 1.16862 0.81507 0.76958 0.87358 1.90815 1.81616 1.51099 1.18047 1.45576 1.04971 1.73575 1.11503 1.21012 0.87037 1.03509 0.90262 1.19695 0.85403 0.85798 0.87842 1.90496 1.86209 1.57605 1.14048 1.41785 1.05167 1.62114 1.09146 1.19735 0.81662 1.47875 0.94181 0.87622 1.25341 1.00339 0.96773 0.95296 1.69613 1.31243 1.49062 1.03471 0.85799 0.80653 0.78580 0.78920 1.20246 1.20797 1.19301 1.20551 0.90848 0.96385 0.99816 0.93918 0.89513 0.94077 0.92315 0.92030 0.81300 0.75319 0.89450 0.89460 0.76983 0.91558 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.92 10.69 -35.23 -0.38 -4.30 16 3 C 0.12 1.07 6.18 36.00 0.22 1.29 16 4 C -0.12 -1.33 5.41 -106.45 -0.58 -1.91 16 5 C -0.22 -2.13 10.67 29.18 0.31 -1.81 16 6 S 0.23 2.60 22.16 -107.50 -2.38 0.22 16 7 C -0.26 -3.68 6.45 -36.79 -0.24 -3.91 16 8 C 0.59 10.03 7.78 -12.90 -0.10 9.93 16 9 O -0.54 -10.48 16.84 5.19 0.09 -10.40 16 10 N -0.70 -12.33 5.52 -62.82 -0.35 -12.68 16 11 C 0.11 2.04 6.15 -5.19 -0.03 2.01 16 12 C 0.43 9.82 7.85 -10.98 -0.09 9.74 16 13 O -0.60 -15.28 15.24 5.55 0.08 -15.19 16 14 N -0.55 -13.55 5.29 -10.96 -0.06 -13.61 16 15 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.79 13.05 55.50 0.72 -23.06 16 19 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.04 -0.55 9.80 -40.43 -0.40 -0.94 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.41 7.07 6.55 -40.82 -0.27 6.80 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.40 9.41 7.90 -40.82 -0.32 9.08 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -32.05 329.13 -6.26 -38.30 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.90 Total: 12.44 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.02 Total: 7.86 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.32 Total: -49.35 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.20 Total: -29.89 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.38 Total: 0.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.05 -6.26 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.244 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds