Wall clock time and date at job start Tue Mar 31 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99619 * 2 1 4 4 C 1.50696 * 109.46715 * 179.97438 * 3 2 1 5 5 C 1.33821 * 122.45310 * 269.97870 * 4 3 2 6 6 S 1.70615 * 110.95828 * 179.78543 * 5 4 3 7 7 C 1.75832 * 91.56061 * 0.30349 * 6 5 4 8 8 C 1.46586 * 125.45805 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00258 * 179.69574 * 8 7 6 10 10 N 1.34774 * 119.99696 * 359.69758 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99571 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.37091 * 119.99763 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00286 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00028 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99825 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99886 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99696 * 19 17 15 23 23 C 1.36644 * 109.08722 * 359.69822 * 7 6 5 24 24 H 1.08998 * 109.47024 * 59.99929 * 1 2 3 25 25 H 1.08998 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47031 * 299.99759 * 1 2 3 27 27 H 1.09001 * 109.46744 * 60.00038 * 3 2 1 28 28 H 1.09000 * 109.47129 * 299.99755 * 3 2 1 29 29 H 1.08007 * 124.51687 * 0.02562 * 5 4 3 30 30 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 32 32 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 33 33 H 0.96998 * 120.00166 * 0.02562 * 14 12 11 34 34 H 0.96996 * 120.00054 * 180.02562 * 18 17 15 35 35 H 1.07997 * 123.35751 * 180.24134 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2279 1.1304 1.1302 6 16 5.8943 0.9923 0.7909 7 6 5.5931 1.0220 -0.9412 8 6 6.6196 0.9397 -1.9843 9 8 6.2981 0.9640 -3.1578 10 7 7.9196 0.8370 -1.6438 11 6 8.9456 0.7542 -2.6863 12 6 10.3055 0.6478 -2.0455 13 8 10.4075 0.6413 -0.8370 14 7 11.4081 0.5588 -2.8155 15 6 12.6451 0.4626 -2.2326 16 1 12.7362 0.4577 -1.1564 17 6 13.7820 0.3714 -3.0263 18 7 13.6714 0.3779 -4.3357 19 14 15.4676 0.2396 -2.2320 20 1 15.8040 -1.1911 -2.0191 21 1 16.4832 0.8600 -3.1202 22 1 15.4556 0.9450 -0.9254 23 6 4.2483 1.1280 -1.1592 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8063 1.1640 2.1240 30 1 8.1760 0.8180 -0.7085 31 1 8.7651 -0.1252 -3.3047 32 1 8.9059 1.6492 -3.3072 33 1 11.3264 0.5636 -3.7820 34 1 14.4649 0.3138 -4.8898 35 1 3.8073 1.1622 -2.1444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597650810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:40 Heat of formation + Delta-G solvation = -110.565684 kcal Electronic energy + Delta-G solvation = -20352.687423 eV Core-core repulsion = 16862.630215 eV Total energy + Delta-G solvation = -3490.057208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13976 -40.11815 -39.50969 -37.82004 -36.28746 -35.39547 -33.40237 -31.86796 -29.49425 -28.63972 -26.82245 -26.54868 -24.78959 -21.82053 -21.46223 -20.26416 -19.98687 -19.63915 -17.77000 -17.49051 -17.33176 -16.84497 -16.84238 -16.64878 -16.28787 -16.08516 -15.67314 -15.60099 -14.97467 -14.42386 -14.03423 -14.02328 -13.98321 -13.55503 -13.52373 -13.04904 -12.91358 -12.90985 -12.46312 -12.26591 -12.12607 -11.88232 -11.58235 -11.36331 -10.62103 -10.59550 -10.41554 -10.11220 -9.90252 -9.57406 -8.51827 -6.02147 -0.56926 0.41238 0.83918 1.15114 1.36054 1.42996 1.55584 1.86924 1.88164 2.03018 2.30213 3.06689 3.13378 3.15184 3.66716 3.95393 4.05229 4.18699 4.23174 4.37695 4.38211 4.42479 4.52187 4.59466 4.62606 4.79348 4.90993 5.09305 5.19949 5.27624 5.37789 5.90095 6.23630 6.30409 6.46535 6.93790 7.02236 7.41764 7.91887 8.64971 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.044003 B = 0.002500 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.171380 B =11197.049368 C =11678.872246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.123 3.877 4 C -0.138 4.138 5 C -0.194 4.194 6 S 0.244 5.756 7 C -0.301 4.301 8 C 0.590 3.410 9 O -0.569 6.569 10 N -0.705 5.705 11 C 0.120 3.880 12 C 0.432 3.568 13 O -0.623 6.623 14 N -0.557 5.557 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.915 5.915 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.035 4.035 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.203 0.797 30 H 0.410 0.590 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.967 2.415 9.498 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.045 3.955 4 C -0.151 4.151 5 C -0.333 4.333 6 S 0.513 5.487 7 C -0.421 4.421 8 C 0.378 3.622 9 O -0.451 6.451 10 N -0.359 5.359 11 C -0.007 4.007 12 C 0.219 3.781 13 O -0.511 6.511 14 N -0.192 5.192 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.555 5.555 19 Si 0.821 3.179 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.220 0.780 30 H 0.248 0.752 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.478 2.141 10.216 23.880 hybrid contribution -0.418 0.170 -0.994 1.092 sum -21.896 2.311 9.221 23.870 Atomic orbital electron populations 1.22936 0.79233 1.03745 1.01186 1.87939 1.21547 1.28390 1.95668 1.21097 0.86794 0.84896 1.02690 1.18582 0.97137 1.08022 0.91379 1.25687 0.98292 1.04697 1.04602 1.83356 1.04139 1.65377 0.95848 1.24366 0.97718 1.21638 0.98399 1.17210 0.81513 0.75765 0.87693 1.90783 1.82014 1.52698 1.19558 1.45576 1.05084 1.74028 1.11181 1.20866 0.84795 1.04648 0.90411 1.20330 0.86466 0.83862 0.87475 1.90471 1.86988 1.58280 1.15397 1.41829 1.05184 1.62847 1.09370 1.19747 0.83183 1.50011 0.93691 0.89463 1.26157 1.03465 0.95782 0.95798 1.69679 1.32461 1.49004 1.04359 0.84848 0.76264 0.78748 0.78009 1.19550 1.19656 1.19390 1.20741 0.90559 0.94946 1.00665 0.93105 0.89004 0.92459 0.89868 0.91195 0.78017 0.75174 0.88305 0.88197 0.76622 0.91033 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.58 10.69 -148.98 -1.59 -9.18 16 3 C 0.12 1.81 6.18 71.23 0.44 2.25 16 4 C -0.14 -2.68 5.41 -21.05 -0.11 -2.79 16 5 C -0.19 -3.25 10.67 66.82 0.71 -2.54 16 6 S 0.24 5.17 22.16 -56.49 -1.25 3.92 16 7 C -0.30 -8.38 6.45 24.08 0.16 -8.23 16 8 C 0.59 20.32 7.78 86.42 0.67 20.99 16 9 O -0.57 -22.55 16.84 -4.33 -0.07 -22.62 16 10 N -0.71 -24.91 5.52 -470.89 -2.60 -27.51 16 11 C 0.12 4.52 6.15 85.63 0.53 5.04 16 12 C 0.43 20.13 7.85 87.66 0.69 20.82 16 13 O -0.62 -32.42 15.24 -3.05 -0.05 -32.46 16 14 N -0.56 -28.06 5.29 -306.99 -1.62 -29.68 16 15 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 16 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 18 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 19 Si 1.00 41.67 29.55 68.60 2.03 43.70 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C -0.04 -0.86 9.80 21.72 0.21 -0.65 16 24 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.41 14.30 6.55 -92.71 -0.61 13.69 16 31 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.10 3.52 8.14 -2.38 -0.02 3.51 16 33 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 34 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -68.82 329.13 0.75 -68.07 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.19 Total: 35.49 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.82 Total: 18.56 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.94 Total: -105.47 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -1.71 Total: -64.26 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.25 Total: 3.92 kcal Total: -68.82 0.75 -68.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.497 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds