Wall clock time and date at job start Tue Mar 31 2020 03:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00156 * 2 1 4 4 C 1.50704 * 109.46687 * 275.00042 * 3 2 1 5 5 N 1.34776 * 119.99818 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00413 * 359.97438 * 4 3 2 7 7 S 1.65599 * 120.00062 * 179.97438 * 2 1 3 8 8 O 1.42102 * 106.40406 * 156.45860 * 7 2 1 9 9 O 1.42100 * 106.40109 * 23.54478 * 7 2 1 10 10 C 1.76199 * 107.22123 * 270.00290 * 7 2 1 11 11 C 1.38663 * 119.87411 * 270.29332 * 10 7 2 12 12 C 1.38609 * 120.49761 * 180.25620 * 11 10 7 13 13 C 1.37636 * 120.25144 * 359.45034 * 12 11 10 14 14 C 1.40702 * 119.74414 * 0.27080 * 13 12 11 15 15 C 1.41389 * 120.24759 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00485 * 204.39220 * 15 14 13 17 17 C 1.39942 * 119.99857 * 24.38333 * 15 14 13 18 18 N 1.30830 * 119.99921 * 17.87213 * 17 15 14 19 19 Si 1.86807 * 120.00314 * 197.86702 * 17 15 14 20 20 H 1.48500 * 109.46633 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46828 * 120.00062 * 19 17 15 22 22 H 1.48497 * 109.47200 * 240.00400 * 19 17 15 23 23 C 1.37598 * 119.87513 * 90.00313 * 10 7 2 24 24 H 1.09003 * 109.47050 * 270.00365 * 1 2 3 25 25 H 1.09001 * 109.47221 * 30.00431 * 1 2 3 26 26 H 1.08998 * 109.46985 * 150.00384 * 1 2 3 27 27 H 1.09003 * 109.47126 * 34.99624 * 3 2 1 28 28 H 1.08999 * 109.47424 * 154.99595 * 3 2 1 29 29 H 0.97004 * 119.99951 * 359.97438 * 5 4 3 30 30 H 0.96993 * 120.00363 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.74681 * 0.02562 * 11 10 7 32 32 H 1.08003 * 119.87315 * 179.72263 * 12 11 10 33 33 H 1.07999 * 120.13059 * 180.25214 * 13 12 11 34 34 H 0.97008 * 119.99884 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.12829 * 0.03895 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4155 5 7 2.9849 2.9241 -1.6608 6 8 1.8782 1.1231 -2.3338 7 16 2.2930 -1.4341 0.0006 8 8 3.5759 -1.1570 -0.5439 9 8 1.4113 -2.4067 -0.5435 10 6 2.5537 -1.8852 1.6838 11 6 3.6943 -1.4557 2.3452 12 6 3.9150 -1.8073 3.6677 13 6 2.9965 -2.5788 4.3427 14 6 1.8328 -3.0155 3.6833 15 6 0.8824 -3.8089 4.3663 16 1 0.2223 -4.4587 3.8110 17 6 0.7973 -3.7523 5.7620 18 7 1.3239 -2.7446 6.4092 19 14 -0.0686 -5.1155 6.7011 20 1 -0.5737 -6.1322 5.7438 21 1 0.8877 -5.7533 7.6413 22 1 -1.2073 -4.5447 7.4644 23 6 1.6219 -2.6573 2.3388 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5894 28 1 3.1858 1.1177 0.4344 29 1 3.3551 3.4383 -0.9263 30 1 3.0772 3.2442 -2.5718 31 1 4.4179 -0.8457 1.8249 32 1 4.8090 -1.4709 4.1717 33 1 3.1685 -2.8482 5.3743 34 1 1.2646 -2.7052 7.3766 35 1 0.7323 -2.9873 1.8229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:14 Heat of formation + Delta-G solvation = -90.750790 kcal Electronic energy + Delta-G solvation = -22114.685532 eV Core-core repulsion = 18625.487563 eV Total energy + Delta-G solvation = -3489.197969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.50703 -37.66026 -36.68740 -35.60536 -35.24079 -33.87237 -33.72907 -30.10522 -29.80781 -28.62577 -25.51367 -25.03939 -21.86802 -21.05359 -20.91451 -18.76551 -18.11517 -17.31501 -17.23974 -16.73174 -15.92247 -15.69120 -15.19869 -14.79089 -14.75168 -14.19569 -14.04983 -13.44685 -13.37910 -13.00081 -12.65208 -12.59640 -12.10821 -11.92152 -11.59451 -11.42113 -11.37249 -11.28882 -11.23415 -10.99714 -10.92376 -10.61043 -10.30987 -9.78938 -9.77345 -9.61293 -9.37988 -8.82641 -8.06054 -7.73354 -6.95677 -4.56036 0.94556 2.17012 2.59893 2.60727 2.99119 3.02531 3.06192 3.30499 3.56919 3.81403 4.31532 4.41752 4.78610 4.83427 4.93034 5.20250 5.36582 5.41992 5.78641 5.99766 6.01404 6.05544 6.13998 6.53181 6.63372 6.69218 6.74108 6.89068 7.01931 7.19021 7.23113 7.35815 7.69598 7.78937 7.91881 8.20535 8.38228 8.64452 8.69401 9.99692 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.027491 B = 0.004213 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.281980 B = 6644.506956 C = 6830.504668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.986 5.986 3 C 0.108 3.892 4 C 0.499 3.501 5 N -0.858 5.858 6 O -0.532 6.532 7 S 2.690 3.310 8 O -0.970 6.970 9 O -0.964 6.964 10 C -0.632 4.632 11 C -0.151 4.151 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.092 3.908 15 C -0.459 4.459 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.911 3.089 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.124 4.124 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.401 0.599 30 H 0.400 0.600 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.283 0.717 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 10.817 -4.748 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.821 5.821 3 C -0.023 4.023 4 C 0.282 3.718 5 N -0.423 5.423 6 O -0.407 6.407 7 S 2.787 3.213 8 O -0.961 6.961 9 O -0.954 6.954 10 C -0.724 4.724 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.139 4.139 14 C 0.088 3.912 15 C -0.488 4.488 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.419 5.419 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.145 4.145 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.230 0.770 30 H 0.230 0.770 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.832 9.903 -5.748 11.480 hybrid contribution -0.124 0.104 1.366 1.376 sum 0.708 10.007 -4.382 10.947 Atomic orbital electron populations 1.21558 0.77863 1.04058 1.02079 1.57168 1.15457 1.19752 1.89732 1.21040 0.99579 0.88117 0.93546 1.21420 0.77085 0.80585 0.92699 1.43841 1.60674 1.25048 1.12704 1.90740 1.47521 1.56092 1.46312 1.01815 0.72632 0.71932 0.74963 1.93497 1.40279 1.84357 1.77955 1.93507 1.66247 1.57836 1.77846 1.29856 1.05043 1.14639 1.22884 1.20054 0.96788 1.05095 0.95323 1.20802 0.98732 1.00128 0.94254 1.21640 0.92853 0.99019 1.00386 1.17696 0.92022 0.90684 0.90774 1.19670 1.16451 1.21384 0.91334 0.89794 1.25939 0.94488 0.95596 0.98254 1.69790 1.35707 1.26286 1.10116 0.86208 0.79395 0.81324 0.79586 1.18160 1.19584 1.19839 1.20800 0.97461 0.99986 0.96291 0.92114 0.91233 0.89732 0.87112 0.86779 0.77041 0.76953 0.87717 0.88351 0.85711 0.90625 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.67 59.85 0.64 1.89 16 2 N -0.99 -15.74 2.68 -123.05 -0.33 -16.07 16 3 C 0.11 1.32 5.81 -5.19 -0.03 1.29 16 4 C 0.50 6.58 8.17 -10.98 -0.09 6.49 16 5 N -0.86 -6.93 8.87 31.22 0.28 -6.65 16 6 O -0.53 -9.55 17.26 5.56 0.10 -9.45 16 7 S 2.69 53.98 5.64 -107.50 -0.61 53.37 16 8 O -0.97 -20.68 16.25 -57.17 -0.93 -21.61 16 9 O -0.96 -21.67 15.87 -57.17 -0.91 -22.57 16 10 C -0.63 -13.88 5.96 -39.66 -0.24 -14.12 16 11 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 12 C -0.12 -2.63 10.02 -39.66 -0.40 -3.03 16 13 C -0.12 -2.92 8.70 -38.87 -0.34 -3.26 16 14 C 0.09 2.35 5.58 -106.82 -0.60 1.75 16 15 C -0.46 -11.64 9.05 -37.75 -0.34 -11.99 16 16 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 17 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 18 N -0.79 -19.21 10.95 55.55 0.61 -18.60 16 19 Si 0.91 17.79 29.60 -169.99 -5.03 12.75 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.12 -2.97 9.26 -38.87 -0.36 -3.33 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.08 1.27 7.02 -51.93 -0.36 0.91 16 27 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.11 1.28 7.61 -51.93 -0.40 0.88 16 29 H 0.40 1.80 8.83 -40.82 -0.36 1.44 16 30 H 0.40 2.84 8.93 -40.82 -0.36 2.48 16 31 H 0.10 1.96 7.61 -52.49 -0.40 1.56 16 32 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.13 3.10 6.15 -52.49 -0.32 2.78 16 34 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 35 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -34.04 318.65 -8.07 -42.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.84 Total: 8.12 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.21 Total: -26.21 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.56 Total: -41.33 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -1.74 Total: -53.63 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.61 Total: 53.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.04 -8.07 -42.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.637 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds