Wall clock time and date at job start Tue Mar 31 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46972 * 2 1 4 4 N 1.29029 * 124.91545 * 89.99802 * 3 2 1 5 5 C 1.31774 * 117.12383 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.75196 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47209 * 305.02867 * 6 5 4 8 8 O 1.21292 * 119.99638 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00086 * 179.97438 * 7 6 5 10 10 C 1.37105 * 119.99734 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00117 * 16.50662 * 10 9 7 12 12 C 1.38948 * 119.99606 * 196.51061 * 10 9 7 13 13 N 1.31413 * 120.00330 * 21.64012 * 12 10 9 14 14 Si 1.86797 * 119.99828 * 201.63791 * 12 10 9 15 15 H 1.48502 * 109.47213 * 60.00262 * 14 12 10 16 16 H 1.48507 * 109.47342 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47344 * 300.00130 * 14 12 10 18 18 C 1.46498 * 120.00434 * 359.97438 * 9 7 6 19 19 C 1.50699 * 109.46902 * 84.06529 * 18 9 7 20 20 O 1.20829 * 120.00226 * 0.02562 * 19 18 9 21 21 O 1.34237 * 119.99922 * 180.02562 * 19 18 9 22 22 C 1.33640 * 114.50345 * 0.23724 * 5 4 3 23 23 S 1.70979 * 124.91693 * 269.99926 * 3 2 1 24 24 H 1.09004 * 109.46964 * 60.00019 * 1 2 3 25 25 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47503 * 299.99884 * 1 2 3 27 27 H 1.08994 * 109.47174 * 239.99879 * 2 1 3 28 28 H 1.09004 * 109.46964 * 119.99981 * 2 1 3 29 29 H 1.09000 * 109.47178 * 65.02503 * 6 5 4 30 30 H 1.08994 * 109.47806 * 185.02589 * 6 5 4 31 31 H 0.97004 * 120.00186 * 179.97438 * 13 12 10 32 32 H 1.08995 * 109.47203 * 204.07194 * 18 9 7 33 33 H 1.09005 * 109.47084 * 324.07075 * 18 9 7 34 34 H 0.96703 * 116.99968 * 180.02562 * 21 19 18 35 35 H 1.07997 * 126.04183 * 179.77031 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7141 3.3479 0.8794 6 6 3.0401 4.2716 2.0246 7 6 1.8448 4.3836 2.9356 8 8 0.8281 3.7736 2.6798 9 7 1.9056 5.1614 4.0345 10 6 0.8184 5.2628 4.8636 11 1 0.0215 4.5367 4.8003 12 6 0.7418 6.2999 5.7851 13 7 1.4456 7.3946 5.6024 14 14 -0.3617 6.1382 7.2836 15 1 0.0704 4.9705 8.0928 16 1 -0.2663 7.3723 8.1042 17 1 -1.7670 5.9436 6.8448 18 6 3.1338 5.8977 4.3438 19 6 3.1484 7.1949 3.5769 20 8 2.2273 7.4757 2.8472 21 8 4.1849 8.0383 3.7044 22 6 2.8379 3.7117 -0.4006 23 16 2.3585 2.3435 -1.4020 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8867 3.8728 2.5834 30 1 3.2938 5.2576 1.6353 31 1 1.3918 8.1188 6.2456 32 1 3.1724 6.1071 5.4128 33 1 3.9984 5.2978 4.0596 34 1 4.1493 8.8582 3.1928 35 1 3.1739 4.6738 -0.7580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737281060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:09 Heat of formation + Delta-G solvation = -96.954972 kcal Electronic energy + Delta-G solvation = -22157.744855 eV Core-core repulsion = 18668.277853 eV Total energy + Delta-G solvation = -3489.467003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44134 -40.76461 -39.65069 -36.98038 -36.33125 -35.17240 -33.81025 -32.04548 -29.63269 -29.10343 -26.70216 -26.09140 -23.13302 -22.71854 -21.12885 -20.50938 -19.02096 -18.68354 -18.46732 -18.04261 -17.33517 -16.57606 -16.43717 -16.20800 -15.89756 -15.58025 -15.41801 -15.15382 -14.61428 -14.25680 -13.89102 -13.80332 -13.53487 -13.37534 -13.19736 -12.98918 -12.70319 -12.53362 -12.47733 -12.28224 -12.12346 -12.10035 -11.99654 -11.50349 -10.94642 -10.51909 -10.43761 -10.25379 -9.84744 -9.59202 -8.43255 -5.93828 -0.20208 0.49231 0.76473 1.37524 1.41499 1.52075 1.70371 1.80939 1.94786 2.27582 2.54748 2.96742 3.12817 3.17007 3.79449 3.99435 4.14669 4.21761 4.24731 4.33641 4.37394 4.44424 4.67776 4.74065 4.78475 4.94805 4.95186 5.07510 5.17824 5.33528 5.45535 5.96499 6.02210 6.41434 6.94738 7.12889 7.31217 7.47138 7.96646 8.63486 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.004848 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.508188 B = 5774.008776 C = 6973.836302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C 0.035 3.965 4 N -0.484 5.484 5 C 0.072 3.928 6 C -0.055 4.055 7 C 0.459 3.541 8 O -0.606 6.606 9 N -0.448 5.448 10 C -0.339 4.339 11 H 0.073 0.927 12 C 0.001 3.999 13 N -0.892 5.892 14 Si 0.990 3.010 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.285 1.285 18 C 0.140 3.860 19 C 0.497 3.503 20 O -0.549 6.549 21 O -0.517 6.517 22 C -0.268 4.268 23 S 0.156 5.844 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.027 0.973 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.274 0.726 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.414 0.586 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 -7.228 -9.930 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.244 4.244 4 N -0.199 5.199 5 C -0.060 4.060 6 C -0.097 4.097 7 C 0.248 3.752 8 O -0.490 6.490 9 N -0.168 5.168 10 C -0.467 4.467 11 H 0.091 0.909 12 C -0.201 4.201 13 N -0.532 5.532 14 Si 0.814 3.186 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.211 1.211 18 C 0.015 3.985 19 C 0.339 3.661 20 O -0.438 6.438 21 O -0.329 6.329 22 C -0.407 4.407 23 S 0.411 5.589 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.046 0.954 27 H 0.137 0.863 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.273 0.727 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.035 -8.051 -10.494 15.476 hybrid contribution -0.754 1.809 1.307 2.355 sum 7.281 -6.242 -9.187 13.281 Atomic orbital electron populations 1.21744 0.93669 1.03471 1.01327 1.20377 0.96567 0.86075 1.05447 1.27689 1.02760 1.02971 0.90930 1.65961 1.14081 1.06701 1.33128 1.19731 1.00812 0.91405 0.94028 1.20198 0.97445 0.98800 0.93287 1.20625 0.89974 0.83049 0.81515 1.90508 1.34958 1.50012 1.73526 1.43558 1.12146 1.39753 1.21341 1.19509 1.01605 1.11669 1.13898 0.90886 1.25896 0.99676 0.92854 1.01633 1.69868 1.43469 1.04075 1.35752 0.85057 0.77777 0.78143 0.77659 1.18795 1.19529 1.21053 1.20867 0.87903 0.87767 1.01983 1.23820 0.78043 0.86343 0.77850 1.90612 1.36946 1.76293 1.39973 1.84456 1.45662 1.34165 1.68643 1.27065 1.12417 1.05771 0.95461 1.83245 1.60275 1.04115 1.11262 0.92186 0.88757 0.95355 0.86321 0.89150 0.86033 0.87668 0.91560 0.86239 0.85986 0.72666 0.78769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.89 71.98 0.71 -2.57 16 2 C -0.04 -0.99 6.52 29.85 0.19 -0.79 16 3 C 0.04 1.07 6.64 88.52 0.59 1.66 16 4 N -0.48 -19.10 9.68 -179.40 -1.74 -20.84 16 5 C 0.07 2.73 5.63 41.52 0.23 2.97 16 6 C -0.05 -2.12 4.81 29.10 0.14 -1.98 16 7 C 0.46 23.63 7.38 87.66 0.65 24.28 16 8 O -0.61 -36.54 15.09 -3.07 -0.05 -36.59 16 9 N -0.45 -23.29 2.18 -639.61 -1.39 -24.68 16 10 C -0.34 -19.60 9.34 84.04 0.79 -18.81 16 11 H 0.07 4.59 7.37 -2.91 -0.02 4.57 16 12 C 0.00 0.04 4.87 84.93 0.41 0.45 16 13 N -0.89 -46.75 9.29 21.66 0.20 -46.54 16 14 Si 0.99 42.92 29.60 68.60 2.03 44.95 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 C 0.14 5.95 4.97 85.63 0.43 6.37 16 19 C 0.50 21.12 5.87 71.24 0.42 21.53 16 20 O -0.55 -28.24 16.79 21.95 0.37 -27.88 16 21 O -0.52 -16.81 13.42 -51.48 -0.69 -17.50 16 22 C -0.27 -8.20 11.07 66.78 0.74 -7.46 16 23 S 0.16 3.90 23.18 -56.49 -1.31 2.59 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.12 3.91 7.41 -2.39 -0.02 3.90 16 30 H 0.11 3.72 7.40 -2.39 -0.02 3.70 16 31 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.12 5.29 6.37 -2.39 -0.02 5.27 16 33 H 0.12 3.95 6.69 -2.38 -0.02 3.94 16 34 H 0.41 9.91 9.10 -74.05 -0.67 9.24 16 35 H 0.20 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -80.98 318.96 3.19 -77.79 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.47 Total: 23.04 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 5.30 Total: 25.65 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -2.93 Total: -92.07 kcal Atomic # 8 Polarization: -81.59 SS G_CDS: -0.37 Total: -81.96 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.31 Total: 2.59 kcal Total: -80.98 3.19 -77.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737281060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.164 kcal (2) G-P(sol) polarization free energy of solvation -80.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds