Wall clock time and date at job start Tue Mar 31 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29024 * 124.91389 * 2 1 4 4 C 1.31782 * 117.12221 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.75118 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46858 * 305.02579 * 5 4 3 7 7 C 1.50697 * 109.46926 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00056 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00208 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00248 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00002 * 16.51081 * 10 9 7 12 12 C 1.38952 * 119.99806 * 196.51095 * 10 9 7 13 13 N 1.31404 * 120.00156 * 21.64559 * 12 10 9 14 14 Si 1.86804 * 119.99741 * 201.63768 * 12 10 9 15 15 H 1.48501 * 109.46953 * 60.00428 * 14 12 10 16 16 H 1.48503 * 109.46770 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47213 * 300.00233 * 14 12 10 18 18 C 1.46502 * 119.99648 * 359.97438 * 9 7 6 19 19 C 1.50700 * 109.47118 * 84.07080 * 18 9 7 20 20 O 1.20822 * 119.99925 * 359.97438 * 19 18 9 21 21 O 1.34227 * 120.00062 * 180.02562 * 19 18 9 22 22 C 1.33635 * 114.50288 * 0.22903 * 4 3 2 23 23 S 1.70976 * 124.91618 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47307 * 90.00463 * 1 2 3 25 25 H 1.09002 * 109.47262 * 210.01069 * 1 2 3 26 26 H 1.09005 * 109.46868 * 330.00413 * 1 2 3 27 27 H 1.08996 * 109.46915 * 185.02772 * 5 4 3 28 28 H 1.08995 * 109.46756 * 65.02056 * 5 4 3 29 29 H 1.08998 * 109.46877 * 299.99841 * 6 5 4 30 30 H 1.08994 * 109.47031 * 59.99612 * 6 5 4 31 31 H 0.97001 * 120.00402 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.46943 * 204.07005 * 18 9 7 33 33 H 1.09000 * 109.47273 * 324.06692 * 18 9 7 34 34 H 0.96699 * 117.00114 * 180.02562 * 21 19 18 35 35 H 1.08006 * 126.04543 * 179.77115 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2334 2.9495 -1.1820 7 6 5.2126 4.0950 -1.1822 8 8 6.0647 4.1646 -0.3218 9 7 5.1421 5.0417 -2.1389 10 6 6.0332 6.0835 -2.1393 11 1 6.9404 6.0184 -1.5570 12 6 5.7691 7.2232 -2.8891 13 7 4.5358 7.5048 -3.2443 14 14 7.1675 8.3551 -3.3918 15 1 8.1428 7.5998 -4.2186 16 1 6.6257 9.4916 -4.1793 17 1 7.8456 8.8740 -2.1769 18 6 4.1139 4.9567 -3.1790 19 6 2.8298 5.5560 -2.6662 20 8 2.7786 6.0073 -1.5465 21 8 1.7427 5.5875 -3.4528 22 6 3.9354 -0.4005 -0.0039 23 16 2.4856 -1.4020 0.0006 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5140 26 1 -0.3633 0.8901 0.5138 27 1 5.5448 1.6352 -0.0895 28 1 4.4368 2.5834 0.9311 29 1 4.3273 2.3907 -2.1131 30 1 3.2193 3.3388 -1.0926 31 1 4.3514 8.3003 -3.7680 32 1 4.4437 5.5049 -4.0615 33 1 3.9479 3.9119 -3.4414 34 1 0.9424 5.9821 -3.0801 35 1 4.9545 -0.7581 -0.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738852501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:37 Heat of formation + Delta-G solvation = -101.008796 kcal Electronic energy + Delta-G solvation = -21981.652908 eV Core-core repulsion = 18492.010119 eV Total energy + Delta-G solvation = -3489.642790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34949 -40.85185 -39.91728 -37.08119 -36.39004 -34.83860 -33.75094 -32.08909 -29.55767 -29.22789 -27.44449 -25.50651 -23.36806 -22.80424 -20.69835 -20.57582 -19.03611 -18.74412 -18.48341 -17.94987 -17.43790 -16.67231 -16.34424 -16.20228 -15.99632 -15.79740 -15.68397 -14.70204 -14.43196 -14.25284 -14.02156 -13.65482 -13.52151 -13.48593 -13.30545 -13.00975 -12.85650 -12.61415 -12.47364 -12.32067 -12.16649 -12.13363 -11.95254 -11.52830 -10.96303 -10.54827 -10.47633 -10.33556 -9.88317 -9.58484 -8.43932 -5.95888 -0.21420 0.47156 0.76535 1.38151 1.42776 1.53893 1.69829 1.78574 1.86145 2.26731 2.53096 2.93511 3.09459 3.18561 3.78047 3.98177 4.09774 4.19703 4.27626 4.38835 4.51803 4.61360 4.66457 4.70316 4.73975 4.91361 4.95666 5.06923 5.10522 5.29253 5.45313 5.93983 6.00304 6.38002 6.86290 7.09360 7.28980 7.44486 7.91572 8.62918 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.004077 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.366463 B = 6866.616522 C = 7730.256478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.036 3.964 3 N -0.509 5.509 4 C 0.056 3.944 5 C -0.017 4.017 6 C -0.107 4.107 7 C 0.449 3.551 8 O -0.620 6.620 9 N -0.445 5.445 10 C -0.345 4.345 11 H 0.080 0.920 12 C -0.001 4.001 13 N -0.894 5.894 14 Si 0.994 3.006 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.282 1.282 18 C 0.144 3.856 19 C 0.497 3.503 20 O -0.549 6.549 21 O -0.518 6.518 22 C -0.261 4.261 23 S 0.164 5.836 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.275 0.725 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.413 0.587 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 -17.217 -1.698 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.242 4.242 3 N -0.226 5.226 4 C -0.075 4.075 5 C -0.058 4.058 6 C -0.147 4.147 7 C 0.240 3.760 8 O -0.507 6.507 9 N -0.164 5.164 10 C -0.472 4.472 11 H 0.098 0.902 12 C -0.202 4.202 13 N -0.533 5.533 14 Si 0.817 3.183 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.208 1.208 18 C 0.018 3.982 19 C 0.339 3.661 20 O -0.438 6.438 21 O -0.330 6.330 22 C -0.400 4.400 23 S 0.419 5.581 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.272 0.728 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.941 -17.654 -1.258 19.829 hybrid contribution 0.679 2.284 0.308 2.402 sum -8.262 -15.370 -0.950 17.476 Atomic orbital electron populations 1.20626 0.83013 1.05113 1.05094 1.27686 1.03319 0.91112 1.02062 1.66084 1.05183 1.33519 1.17777 1.20166 0.89959 0.94633 1.02757 1.19722 0.96460 0.91916 0.97684 1.21350 0.98002 0.94466 1.00912 1.20956 0.87267 0.86562 0.81224 1.90470 1.41063 1.80077 1.39045 1.43616 1.27205 1.21909 1.23625 1.19628 1.00919 0.96184 1.30475 0.90169 1.25994 0.99258 0.97845 0.97127 1.69887 1.18928 1.27427 1.37022 0.84995 0.77912 0.77165 0.78201 1.18500 1.19771 1.20799 1.20821 0.83229 1.01229 0.92911 1.23833 0.84937 0.74783 0.82560 1.90607 1.84332 1.45285 1.23612 1.84441 1.22689 1.76788 1.49109 1.27124 1.05071 0.95268 1.12525 1.83516 0.95968 1.10834 1.67787 0.88155 0.87495 0.89967 0.88984 0.92370 0.87863 0.90631 0.91524 0.86107 0.86463 0.72769 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.46 71.24 0.75 -0.40 16 2 C 0.04 0.81 7.39 88.52 0.65 1.47 16 3 N -0.51 -15.70 10.34 -179.40 -1.86 -17.56 16 4 C 0.06 1.69 6.08 41.52 0.25 1.94 16 5 C -0.02 -0.62 5.00 29.85 0.15 -0.47 16 6 C -0.11 -4.22 4.21 29.85 0.13 -4.10 16 7 C 0.45 22.94 7.41 87.66 0.65 23.59 16 8 O -0.62 -36.02 15.62 -3.08 -0.05 -36.07 16 9 N -0.44 -23.29 2.18 -639.60 -1.39 -24.68 16 10 C -0.34 -19.76 9.34 84.04 0.79 -18.98 16 11 H 0.08 4.91 7.37 -2.91 -0.02 4.89 16 12 C 0.00 -0.04 4.87 84.93 0.41 0.37 16 13 N -0.89 -47.34 9.29 21.66 0.20 -47.14 16 14 Si 0.99 42.46 29.60 68.60 2.03 44.49 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C 0.14 6.32 4.97 85.63 0.43 6.74 16 19 C 0.50 22.42 5.86 71.24 0.42 22.84 16 20 O -0.55 -29.86 16.79 21.98 0.37 -29.49 16 21 O -0.52 -18.26 13.42 -51.39 -0.69 -18.95 16 22 C -0.26 -6.03 11.07 66.77 0.74 -5.29 16 23 S 0.16 2.94 23.18 -56.49 -1.31 1.63 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.09 3.09 7.98 -2.39 -0.02 3.07 16 28 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 29 H 0.10 3.42 7.41 -2.39 -0.02 3.40 16 30 H 0.08 3.18 7.45 -2.39 -0.02 3.16 16 31 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.12 5.46 6.37 -2.39 -0.02 5.45 16 33 H 0.12 4.08 6.69 -2.39 -0.02 4.07 16 34 H 0.41 11.07 9.10 -74.06 -0.67 10.40 16 35 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -78.41 319.69 3.13 -75.28 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.47 Total: 24.80 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 5.36 Total: 27.70 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.05 Total: -89.38 kcal Atomic # 8 Polarization: -84.14 SS G_CDS: -0.37 Total: -84.51 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.31 Total: 1.63 kcal Total: -78.41 3.13 -75.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738852501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.734 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds