Wall clock time and date at job start Tue Mar 31 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38348 * 120.34843 * 2 1 4 4 N 1.31934 * 121.08060 * 179.97438 * 3 2 1 5 5 C 1.31690 * 121.87672 * 0.02581 * 4 3 2 6 6 C 1.39513 * 120.57162 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.56497 * 180.02562 * 6 5 4 8 8 O 1.21548 * 120.00306 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99442 * 359.95481 * 7 6 5 10 10 S 1.65601 * 120.00085 * 180.02562 * 9 7 6 11 11 O 1.42090 * 104.28135 * 181.06635 * 10 9 7 12 12 O 1.42099 * 104.27787 * 308.93091 * 10 9 7 13 13 C 1.81401 * 104.44786 * 64.99741 * 10 9 7 14 14 C 1.53001 * 109.47279 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.47645 * 179.97438 * 14 13 10 16 16 H 1.08006 * 119.99548 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00699 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99612 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00673 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47204 * 59.99913 * 19 17 15 21 21 H 1.48501 * 109.47263 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47029 * 300.00514 * 19 17 15 23 23 C 1.38362 * 120.34951 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.46675 * 90.00184 * 1 2 3 25 25 H 1.09006 * 109.47034 * 209.99901 * 1 2 3 26 26 H 1.08997 * 109.47202 * 329.99854 * 1 2 3 27 27 H 1.07998 * 119.45941 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.71379 * 179.97438 * 5 4 3 29 29 H 0.97006 * 120.00172 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.47443 * 299.99988 * 13 10 9 31 31 H 1.08997 * 109.47292 * 60.00516 * 13 10 9 32 32 H 1.08997 * 109.47171 * 300.00273 * 14 13 10 33 33 H 1.09004 * 109.47115 * 60.00130 * 14 13 10 34 34 H 0.96996 * 119.99984 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.85522 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5253 1.2108 0.0005 5 6 4.2349 0.1014 0.0005 6 6 3.6055 -1.1436 0.0005 7 6 4.4024 -2.3889 0.0011 8 8 3.8433 -3.4682 0.0016 9 7 5.7487 -2.3273 0.0007 10 16 6.6415 -3.7220 0.0008 11 8 7.9900 -3.2750 0.0259 12 8 6.1019 -4.4835 1.0723 13 6 6.2597 -4.5038 -1.5910 14 6 7.0331 -5.8184 -1.7121 15 6 6.7155 -6.4682 -3.0342 16 1 6.0301 -5.9914 -3.7194 17 6 7.2997 -7.6712 -3.3691 18 7 8.1339 -8.2520 -2.5345 19 14 6.9066 -8.4763 -5.0082 20 1 7.3002 -7.5663 -6.1138 21 1 7.6572 -9.7523 -5.1256 22 1 5.4493 -8.7507 -5.0880 23 6 2.2061 -1.1940 0.0005 24 1 -0.3632 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6629 2.1274 -0.0004 28 1 5.3136 0.1560 0.0005 29 1 6.1948 -1.4659 -0.0003 30 1 5.1901 -4.7053 -1.6496 31 1 6.5486 -3.8358 -2.4024 32 1 8.1027 -5.6173 -1.6534 33 1 6.7438 -6.4862 -0.9007 34 1 8.5453 -9.0982 -2.7703 35 1 1.6859 -2.1404 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776117456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:23 Heat of formation + Delta-G solvation = -112.070472 kcal Electronic energy + Delta-G solvation = -21318.108384 eV Core-core repulsion = 17827.985924 eV Total energy + Delta-G solvation = -3490.122460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.97776 -40.46510 -38.34506 -37.28813 -36.04851 -35.87500 -34.60108 -33.22857 -33.12810 -28.27184 -27.67534 -26.24592 -23.92362 -23.68089 -22.45523 -20.88501 -19.60228 -19.14907 -18.46206 -17.93853 -17.41924 -17.26783 -16.75939 -16.54838 -16.40208 -16.25908 -15.28356 -15.10683 -14.56779 -14.48710 -14.23569 -13.88058 -13.78523 -13.62945 -13.51166 -13.42002 -13.30936 -12.94839 -12.87574 -12.84997 -12.38344 -12.27379 -12.10567 -11.86725 -11.72751 -11.12920 -10.97526 -10.65484 -10.59805 -10.04712 -8.27912 -6.42199 -1.08308 -0.61490 0.09332 1.19030 1.36004 1.40049 1.43882 1.52093 2.36004 2.49393 2.67718 2.83280 3.05467 3.11706 3.37267 3.62105 3.70825 3.81089 3.86446 3.97666 4.00880 4.12358 4.43338 4.66861 4.73532 4.84437 4.88927 5.15982 5.20842 5.21027 5.22643 5.51390 5.55352 5.65468 6.02571 6.22339 6.70096 6.74856 7.27772 8.84328 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.003626 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.792234 B = 7720.527710 C = 8503.847258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.139 4.139 3 C 0.130 3.870 4 N -0.499 5.499 5 C 0.135 3.865 6 C -0.203 4.203 7 C 0.588 3.412 8 O -0.521 6.521 9 N -1.035 6.035 10 S 2.601 3.399 11 O -0.965 6.965 12 O -0.975 6.975 13 C -0.577 4.577 14 C 0.022 3.978 15 C -0.543 4.543 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.975 3.025 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.026 4.026 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.196 0.804 28 H 0.185 0.815 29 H 0.447 0.553 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.017 0.983 33 H 0.006 0.994 34 H 0.269 0.731 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 22.242 3.205 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.026 4.026 4 N -0.207 5.207 5 C -0.023 4.023 6 C -0.210 4.210 7 C 0.377 3.623 8 O -0.396 6.396 9 N -0.801 5.801 10 S 2.700 3.300 11 O -0.955 6.955 12 O -0.965 6.965 13 C -0.711 4.711 14 C -0.017 4.017 15 C -0.582 4.582 16 H 0.092 0.908 17 C -0.201 4.201 18 N -0.572 5.572 19 Si 0.799 3.201 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.053 4.053 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.213 0.787 28 H 0.202 0.798 29 H 0.288 0.712 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.842 21.889 3.992 26.204 hybrid contribution -0.151 -1.350 -1.004 1.689 sum -13.993 20.539 2.989 25.031 Atomic orbital electron populations 1.20844 0.87147 1.04712 1.04022 1.21264 0.99717 0.92633 1.00521 1.23600 0.89501 0.99181 0.90329 1.67846 1.09138 1.30454 1.13271 1.23343 1.01707 0.85975 0.91281 1.20700 0.95401 0.93314 1.11582 1.18421 0.81119 0.90046 0.72719 1.90976 1.70776 1.30874 1.46942 1.54825 1.16202 1.28707 1.80387 1.05420 0.73027 0.73608 0.77974 1.93572 1.33861 1.80081 1.87975 1.93553 1.79449 1.70732 1.52738 1.30238 1.11472 1.10025 1.19333 1.18838 0.94548 0.89625 0.98655 1.21446 1.27722 1.06386 1.02602 0.90772 1.26112 0.94529 0.97727 1.01713 1.70088 1.30441 1.18366 1.38276 0.85345 0.78670 0.77612 0.78509 1.18515 1.20739 1.19074 1.21920 0.92062 1.00458 0.90812 0.89468 0.90824 0.88699 0.78749 0.79810 0.71153 0.84649 0.82878 0.96475 0.97557 0.92260 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.03 71.24 0.71 0.02 16 2 C -0.14 -1.72 5.89 -19.81 -0.12 -1.84 16 3 C 0.13 1.54 10.85 84.70 0.92 2.46 16 4 N -0.50 -8.13 10.35 -194.76 -2.02 -10.14 16 5 C 0.14 2.21 10.71 85.02 0.91 3.12 16 6 C -0.20 -4.12 5.89 -19.99 -0.12 -4.24 16 7 C 0.59 15.82 7.52 86.79 0.65 16.47 16 8 O -0.52 -18.23 14.52 12.51 0.18 -18.05 16 9 N -1.03 -25.59 5.56 -175.61 -0.98 -26.56 16 10 S 2.60 94.43 5.11 -56.49 -0.29 94.14 16 11 O -0.96 -37.45 18.08 -127.65 -2.31 -39.76 16 12 O -0.97 -43.56 17.04 -120.72 -2.06 -45.62 16 13 C -0.58 -22.93 5.82 71.98 0.42 -22.51 16 14 C 0.02 1.19 4.98 29.85 0.15 1.34 16 15 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 16 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 19 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 C -0.03 -0.47 9.39 22.73 0.21 -0.26 16 24 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.07 0.50 8.09 -2.38 -0.02 0.48 16 26 H 0.09 0.22 8.09 -2.39 -0.02 0.20 16 27 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 28 H 0.19 1.89 6.42 -2.91 -0.02 1.87 16 29 H 0.45 6.89 6.86 -96.74 -0.66 6.22 16 30 H 0.14 5.28 7.19 -2.39 -0.02 5.27 16 31 H 0.15 5.02 8.14 -2.39 -0.02 5.00 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 35 H 0.15 2.71 7.74 -2.91 -0.02 2.69 16 Total: -1.00 -82.26 321.52 -0.25 -82.51 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.47 Total: 10.02 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 4.44 Total: -35.50 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -2.71 Total: -93.48 kcal Atomic # 8 Polarization: -99.24 SS G_CDS: -4.18 Total: -103.42 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 94.43 SS G_CDS: -0.29 Total: 94.14 kcal Total: -82.26 -0.25 -82.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776117456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.563 kcal (2) G-P(sol) polarization free energy of solvation -82.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds