Wall clock time and date at job start Tue Mar 31 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38623 * 120.32225 * 2 1 4 4 C 1.38595 * 118.48634 * 180.02562 * 3 2 1 5 5 C 1.39308 * 119.05699 * 359.97438 * 4 3 2 6 6 C 1.48172 * 119.71823 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00154 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99607 * 180.02562 * 6 5 4 9 9 S 1.65603 * 120.00137 * 179.97438 * 8 6 5 10 10 O 1.42095 * 104.28189 * 181.07215 * 9 8 6 11 11 O 1.42101 * 104.27493 * 308.92979 * 9 8 6 12 12 C 1.81406 * 104.44785 * 64.99866 * 9 8 6 13 13 C 1.52996 * 109.46991 * 180.02562 * 12 9 8 14 14 C 1.50706 * 109.47009 * 180.02562 * 13 12 9 15 15 H 1.07996 * 119.99699 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99835 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47320 * 59.99812 * 18 16 14 20 20 H 1.48497 * 109.46960 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47394 * 299.99707 * 18 16 14 22 22 N 1.32718 * 120.55490 * 359.97438 * 5 4 3 23 23 C 1.31515 * 121.64170 * 0.04236 * 22 5 4 24 24 H 1.08998 * 109.47104 * 89.99989 * 1 2 3 25 25 H 1.09003 * 109.47357 * 210.00259 * 1 2 3 26 26 H 1.09006 * 109.47050 * 330.00265 * 1 2 3 27 27 H 1.07998 * 120.76123 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.46738 * 179.72634 * 4 3 2 29 29 H 0.97004 * 120.00166 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.47203 * 300.00546 * 12 9 8 31 31 H 1.09006 * 109.46676 * 60.00165 * 12 9 8 32 32 H 1.08995 * 109.47555 * 300.00284 * 13 12 9 33 33 H 1.09006 * 109.47314 * 60.00509 * 13 12 9 34 34 H 0.97002 * 119.99377 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.54659 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1522 -0.0005 5 6 4.2293 -0.0866 -0.0005 6 6 5.7096 -0.1512 -0.0005 7 8 6.3625 0.8737 -0.0010 8 7 6.3319 -1.3466 -0.0010 9 16 7.9864 -1.4189 -0.0017 10 8 8.2765 -2.8097 -0.0279 11 8 8.3738 -0.5695 -1.0729 12 6 8.4716 -0.6973 1.5904 13 6 9.9968 -0.7068 1.7109 14 6 10.3998 -0.1078 3.0338 15 1 9.6437 0.2446 3.7197 16 6 11.7339 -0.0089 3.3680 17 7 12.6545 -0.4377 2.5324 18 14 12.2334 0.7341 5.0074 19 1 11.6449 -0.0643 6.1126 20 1 13.7137 0.7248 5.1244 21 1 11.7387 2.1319 5.0887 22 7 3.5216 -1.2094 0.0005 23 6 2.2065 -1.1960 0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6846 2.1419 -0.0004 28 1 4.1692 2.0650 -0.0050 29 1 5.8107 -2.1648 -0.0010 30 1 8.1091 0.3289 1.6497 31 1 8.0389 -1.2830 2.4016 32 1 10.3596 -1.7328 1.6514 33 1 10.4290 -0.1208 0.8997 34 1 13.5930 -0.3685 2.7677 35 1 1.6644 -2.1301 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:27 Heat of formation + Delta-G solvation = -83.511586 kcal Electronic energy + Delta-G solvation = -21251.123241 eV Core-core repulsion = 17762.239187 eV Total energy + Delta-G solvation = -3488.884054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06146 -39.42803 -36.65994 -35.58861 -34.70757 -33.89532 -33.81383 -32.37078 -31.15998 -28.32595 -25.60666 -24.35782 -23.73450 -21.76907 -21.48430 -19.36643 -18.77480 -17.65959 -16.94013 -16.42843 -15.90862 -15.80985 -15.50117 -15.16264 -14.94696 -14.55219 -14.42166 -14.33674 -13.63994 -13.42363 -13.11367 -13.00076 -12.52492 -12.35215 -12.23188 -11.77536 -11.69372 -11.58693 -11.05103 -10.98154 -10.84703 -10.70471 -10.38103 -10.32700 -10.27916 -9.95513 -9.68931 -9.41284 -9.16393 -8.47278 -6.09742 -4.15159 0.17153 0.53072 0.80800 2.18734 2.71008 3.30184 3.34450 3.36704 3.42665 3.58181 4.08334 4.22860 4.27629 4.39648 4.41252 4.45278 4.65273 4.78746 4.99542 5.04944 5.11329 5.25472 5.31407 5.44331 5.53892 5.64265 5.73022 5.75079 6.14900 6.48195 6.65738 7.20755 7.31309 7.37970 7.50253 7.83201 8.19318 8.87536 9.49120 11.01407 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.003464 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.460427 B = 8080.405768 C = 8750.695374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.112 4.112 3 C -0.085 4.085 4 C -0.099 4.099 5 C 0.066 3.934 6 C 0.597 3.403 7 O -0.481 6.481 8 N -1.044 6.044 9 S 2.565 3.435 10 O -0.951 6.951 11 O -0.938 6.938 12 C -0.576 4.576 13 C 0.030 3.970 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.902 3.098 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.450 5.450 23 C 0.098 3.902 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.437 0.563 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.304 0.305 -4.418 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.114 4.114 3 C -0.111 4.111 4 C -0.120 4.120 5 C -0.073 4.073 6 C 0.381 3.619 7 O -0.351 6.351 8 N -0.805 5.805 9 S 2.666 3.334 10 O -0.941 6.941 11 O -0.928 6.928 12 C -0.710 4.710 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.729 3.271 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.161 5.161 23 C -0.062 4.062 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.273 0.727 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -24.639 -0.108 -5.210 25.184 hybrid contribution -0.635 0.931 1.411 1.806 sum -25.275 0.823 -3.799 25.572 Atomic orbital electron populations 1.20808 0.89591 1.03679 1.03085 1.21249 0.98074 0.94225 0.97832 1.21566 0.93502 0.98734 0.97267 1.22229 0.95147 0.99063 0.95527 1.20936 0.93581 0.90133 1.02681 1.17782 0.87185 0.82868 0.74028 1.90994 1.65844 1.33034 1.45254 1.55241 1.30695 1.14930 1.79599 1.06751 0.71914 0.75221 0.79549 1.93593 1.81057 1.31352 1.88130 1.93597 1.79057 1.68585 1.51526 1.30349 1.11473 1.12614 1.16594 1.18994 0.82671 0.99228 1.00056 1.20949 0.92090 1.41314 1.01580 0.92000 1.25062 0.96507 0.95357 0.97528 1.69946 1.00890 1.46101 1.35926 0.86501 0.77435 0.79738 0.83427 1.20083 1.21070 1.20033 1.67463 1.08914 1.30212 1.09483 1.22728 0.89028 0.97965 0.96519 0.90303 0.90670 0.90864 0.83765 0.82797 0.72659 0.85053 0.85929 0.94692 0.94514 0.92454 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.37 10.03 36.01 0.36 -0.01 16 2 C -0.11 -0.71 5.91 -104.36 -0.62 -1.33 16 3 C -0.08 -0.60 9.85 -39.31 -0.39 -0.99 16 4 C -0.10 -0.98 9.63 -39.05 -0.38 -1.36 16 5 C 0.07 0.81 6.75 -83.01 -0.56 0.25 16 6 C 0.60 9.11 7.55 -12.18 -0.09 9.02 16 7 O -0.48 -8.65 14.42 -11.78 -0.17 -8.82 16 8 N -1.04 -15.61 5.59 30.60 0.17 -15.44 16 9 S 2.57 49.34 5.11 -107.50 -0.55 48.79 16 10 O -0.95 -19.75 18.08 -57.54 -1.04 -20.79 16 11 O -0.94 -21.21 17.04 -64.79 -1.10 -22.31 16 12 C -0.58 -11.82 5.82 37.16 0.22 -11.60 16 13 C 0.03 0.78 4.98 -27.88 -0.14 0.65 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 N -0.45 -4.90 9.54 -9.80 -0.09 -4.99 16 23 C 0.10 0.76 10.86 -17.57 -0.19 0.57 16 24 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 26 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 27 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 28 H 0.15 1.45 7.64 -52.49 -0.40 1.05 16 29 H 0.44 5.31 8.12 -34.47 -0.28 5.03 16 30 H 0.13 2.62 7.19 -51.93 -0.37 2.25 16 31 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 32 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 323.75 15.07 4.88 4.88 Total: -1.00 -37.09 323.75 -8.36 -45.45 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.97 Total: 1.09 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.19 Total: -18.27 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.81 Total: -46.56 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -2.31 Total: -51.93 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 49.34 SS G_CDS: -0.55 Total: 48.79 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.09 -8.36 -45.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.062 kcal (2) G-P(sol) polarization free energy of solvation -37.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds