Wall clock time and date at job start Tue Mar 31 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38623 * 120.32225 * 2 1 4 4 C 1.38595 * 118.48634 * 180.02562 * 3 2 1 5 5 C 1.39308 * 119.05699 * 359.97438 * 4 3 2 6 6 C 1.48172 * 119.71823 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00154 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99607 * 180.02562 * 6 5 4 9 9 S 1.65603 * 120.00137 * 179.97438 * 8 6 5 10 10 O 1.42095 * 104.28189 * 181.07215 * 9 8 6 11 11 O 1.42101 * 104.27493 * 308.92979 * 9 8 6 12 12 C 1.81406 * 104.44785 * 64.99866 * 9 8 6 13 13 C 1.52996 * 109.46991 * 180.02562 * 12 9 8 14 14 C 1.50706 * 109.47009 * 180.02562 * 13 12 9 15 15 H 1.07996 * 119.99699 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99835 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47320 * 59.99812 * 18 16 14 20 20 H 1.48497 * 109.46960 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47394 * 299.99707 * 18 16 14 22 22 N 1.32718 * 120.55490 * 359.97438 * 5 4 3 23 23 C 1.31515 * 121.64170 * 0.04236 * 22 5 4 24 24 H 1.08998 * 109.47104 * 89.99989 * 1 2 3 25 25 H 1.09003 * 109.47357 * 210.00259 * 1 2 3 26 26 H 1.09006 * 109.47050 * 330.00265 * 1 2 3 27 27 H 1.07998 * 120.76123 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.46738 * 179.72634 * 4 3 2 29 29 H 0.97004 * 120.00166 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.47203 * 300.00546 * 12 9 8 31 31 H 1.09006 * 109.46676 * 60.00165 * 12 9 8 32 32 H 1.08995 * 109.47555 * 300.00284 * 13 12 9 33 33 H 1.09006 * 109.47314 * 60.00509 * 13 12 9 34 34 H 0.97002 * 119.99377 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.54659 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1522 -0.0005 5 6 4.2293 -0.0866 -0.0005 6 6 5.7096 -0.1512 -0.0005 7 8 6.3625 0.8737 -0.0010 8 7 6.3319 -1.3466 -0.0010 9 16 7.9864 -1.4189 -0.0017 10 8 8.2765 -2.8097 -0.0279 11 8 8.3738 -0.5695 -1.0729 12 6 8.4716 -0.6973 1.5904 13 6 9.9968 -0.7068 1.7109 14 6 10.3998 -0.1078 3.0338 15 1 9.6437 0.2446 3.7197 16 6 11.7339 -0.0089 3.3680 17 7 12.6545 -0.4377 2.5324 18 14 12.2334 0.7341 5.0074 19 1 11.6449 -0.0643 6.1126 20 1 13.7137 0.7248 5.1244 21 1 11.7387 2.1319 5.0887 22 7 3.5216 -1.2094 0.0005 23 6 2.2065 -1.1960 0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6846 2.1419 -0.0004 28 1 4.1692 2.0650 -0.0050 29 1 5.8107 -2.1648 -0.0010 30 1 8.1091 0.3289 1.6497 31 1 8.0389 -1.2830 2.4016 32 1 10.3596 -1.7328 1.6514 33 1 10.4290 -0.1208 0.8997 34 1 13.5930 -0.3685 2.7677 35 1 1.6644 -2.1301 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776122783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:27 Heat of formation + Delta-G solvation = -112.123441 kcal Electronic energy + Delta-G solvation = -21252.363944 eV Core-core repulsion = 17762.239187 eV Total energy + Delta-G solvation = -3490.124757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95139 -40.43826 -38.34396 -37.29442 -36.00875 -35.82034 -34.53722 -33.21413 -33.03371 -28.91201 -27.66734 -25.10337 -24.50549 -23.62998 -22.48751 -20.79839 -19.92612 -19.25156 -18.46007 -17.59927 -17.43982 -17.01527 -16.55671 -16.48225 -16.36196 -16.12165 -15.28980 -15.20995 -15.04646 -14.49831 -14.23372 -13.87552 -13.78623 -13.56617 -13.43157 -13.32501 -13.28361 -12.94643 -12.87369 -12.72436 -12.36861 -12.28005 -12.09094 -11.88939 -11.73723 -11.12758 -10.90587 -10.67968 -10.65644 -10.03993 -8.27971 -6.42455 -1.08381 -0.59945 0.20030 1.13282 1.33475 1.39840 1.44105 1.52306 2.35887 2.48028 2.66243 2.72358 3.04363 3.05913 3.46353 3.77447 3.82589 3.89455 3.93391 3.98845 3.99833 4.19013 4.64983 4.65365 4.81899 4.88745 4.94776 5.18896 5.19769 5.21201 5.27617 5.51674 5.61122 5.65136 6.02015 6.14789 6.69596 6.71033 7.27368 8.84428 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.003464 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.460427 B = 8080.405768 C = 8750.695374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.084 4.084 4 C -0.104 4.104 5 C 0.034 3.966 6 C 0.594 3.406 7 O -0.516 6.516 8 N -1.028 6.028 9 S 2.598 3.402 10 O -0.967 6.967 11 O -0.974 6.974 12 C -0.575 4.575 13 C 0.023 3.977 14 C -0.543 4.543 15 H 0.074 0.926 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.265 1.265 22 N -0.468 5.468 23 C 0.091 3.909 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.151 0.849 29 H 0.450 0.550 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.016 0.984 33 H 0.007 0.993 34 H 0.269 0.731 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.815 0.637 -3.176 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.109 4.109 4 C -0.126 4.126 5 C -0.104 4.104 6 C 0.381 3.619 7 O -0.389 6.389 8 N -0.793 5.793 9 S 2.697 3.303 10 O -0.957 6.957 11 O -0.964 6.964 12 C -0.709 4.709 13 C -0.016 4.016 14 C -0.582 4.582 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.572 5.572 18 Si 0.800 3.200 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.190 1.190 22 N -0.179 5.179 23 C -0.070 4.070 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.194 0.806 28 H 0.168 0.832 29 H 0.290 0.710 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.035 0.965 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -28.160 0.206 -3.962 28.438 hybrid contribution 0.227 0.796 0.963 1.270 sum -27.933 1.002 -2.999 28.111 Atomic orbital electron populations 1.20927 0.86758 1.05096 1.04244 1.21687 0.99929 0.93335 0.94612 1.21952 0.92192 1.00597 0.96188 1.22347 0.96657 0.98049 0.95512 1.20513 0.91508 0.91658 1.06701 1.18379 0.88813 0.81954 0.72718 1.90965 1.66908 1.33969 1.47075 1.54736 1.28968 1.16050 1.79588 1.05500 0.72579 0.74021 0.78172 1.93562 1.82189 1.31959 1.88031 1.93546 1.80639 1.69498 1.52752 1.30229 1.07680 1.13925 1.19058 1.18842 0.86546 0.97415 0.98777 1.21445 0.92892 1.41400 1.02485 0.90753 1.26130 0.96518 0.95656 1.01809 1.70091 1.01366 1.47435 1.38292 0.85321 0.77121 0.79180 0.78368 1.18537 1.20665 1.18984 1.67380 1.10523 1.29798 1.10243 1.23355 0.88061 0.99991 0.95633 0.88984 0.89234 0.89574 0.80591 0.83172 0.70960 0.84516 0.83080 0.96538 0.97427 0.92230 0.78758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.03 71.24 0.71 0.51 16 2 C -0.09 -0.86 5.91 -19.70 -0.12 -0.97 16 3 C -0.08 -0.94 9.85 22.45 0.22 -0.72 16 4 C -0.10 -1.97 9.63 22.61 0.22 -1.76 16 5 C 0.03 0.82 6.75 41.91 0.28 1.10 16 6 C 0.59 18.46 7.55 86.88 0.66 19.12 16 7 O -0.52 -19.25 14.42 12.63 0.18 -19.07 16 8 N -1.03 -31.09 5.59 -175.38 -0.98 -32.07 16 9 S 2.60 102.87 5.11 -56.49 -0.29 102.58 16 10 O -0.97 -40.92 18.08 -127.65 -2.31 -43.22 16 11 O -0.97 -45.94 17.04 -120.72 -2.06 -48.00 16 12 C -0.58 -24.18 5.82 71.98 0.42 -23.76 16 13 C 0.02 1.28 4.98 29.85 0.15 1.43 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 15 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 18 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 N -0.47 -9.53 9.54 -184.92 -1.76 -11.29 16 23 C 0.09 1.14 10.86 84.82 0.92 2.06 16 24 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.09 -0.02 8.09 -2.39 -0.02 -0.04 16 26 H 0.09 0.01 8.09 -2.38 -0.02 -0.01 16 27 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 28 H 0.15 2.84 7.64 -2.91 -0.02 2.81 16 29 H 0.45 10.85 8.12 -96.74 -0.79 10.07 16 30 H 0.14 5.60 7.19 -2.39 -0.02 5.58 16 31 H 0.15 5.36 8.14 -2.39 -0.02 5.34 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -82.95 323.75 -0.41 -83.35 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.34 Total: 12.66 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.16 Total: -33.72 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -2.46 Total: -100.89 kcal Atomic # 8 Polarization: -106.11 SS G_CDS: -4.18 Total: -110.29 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 102.87 SS G_CDS: -0.29 Total: 102.58 kcal Total: -82.95 -0.41 -83.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.770 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds