Wall clock time and date at job start Tue Mar 31 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00072 * 2 1 4 4 H 1.48507 * 109.46998 * 239.99346 * 3 2 1 5 5 H 1.48496 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47009 * 119.99714 * 3 2 1 7 7 C 1.38952 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00471 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99733 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00107 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99681 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47207 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00280 * 180.02562 * 13 12 10 15 15 O 1.21579 * 119.99784 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00395 * 179.97438 * 14 13 12 17 17 C 1.39542 * 120.00537 * 185.30031 * 16 14 13 18 18 C 1.39456 * 120.85555 * 212.52373 * 17 16 14 19 19 C 1.37887 * 119.10960 * 180.02562 * 18 17 16 20 20 N 1.32012 * 120.84983 * 0.02562 * 19 18 17 21 21 C 1.32051 * 121.87775 * 359.67971 * 20 19 18 22 22 Cl 1.73593 * 119.59844 * 180.31195 * 21 20 19 23 23 C 1.38135 * 120.80255 * 0.59064 * 21 20 19 24 24 H 0.97000 * 119.99806 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99698 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.47660 * 59.99518 * 12 10 9 27 27 H 1.09004 * 109.47046 * 299.99879 * 12 10 9 28 28 H 0.97005 * 120.00022 * 359.97438 * 13 12 10 29 29 H 0.96998 * 119.99730 * 5.30382 * 16 14 13 30 30 H 1.08004 * 120.44299 * 359.97438 * 18 17 16 31 31 H 1.07997 * 119.57589 * 179.97438 * 19 18 17 32 32 H 1.07995 * 120.46557 * 179.72868 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1956 -5.9765 0.0007 14 6 1.7463 -7.2471 -0.0002 15 8 0.5510 -7.4693 -0.0011 16 7 2.6221 -8.2716 0.0000 17 6 2.1610 -9.5838 -0.1125 18 6 2.8290 -10.6332 0.5178 19 6 2.3422 -11.9161 0.3821 20 7 1.2592 -12.1570 -0.3334 21 6 0.5953 -11.1905 -0.9407 22 17 -0.8266 -11.5734 -1.8600 23 6 1.0218 -9.8792 -0.8581 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6172 -4.9205 -0.8902 27 1 0.6167 -4.9209 0.8897 28 1 3.1493 -5.7993 0.0011 29 1 3.5729 -8.0967 0.0784 30 1 3.7163 -10.4436 1.1037 31 1 2.8538 -12.7344 0.8666 32 1 0.4771 -9.0936 -1.3605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806379142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:51 Heat of formation + Delta-G solvation = -31.887402 kcal Electronic energy + Delta-G solvation = -20296.091265 eV Core-core repulsion = 16703.861754 eV Total energy + Delta-G solvation = -3592.229511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13272 -39.70689 -38.34870 -36.83553 -35.53346 -34.64113 -33.87529 -31.51056 -31.30003 -31.09037 -27.70599 -24.81036 -24.02556 -23.37018 -21.13418 -19.77737 -18.92463 -18.47851 -17.96157 -16.72395 -16.24021 -15.80359 -15.69509 -15.52007 -14.84093 -14.71147 -14.58401 -14.31205 -14.17635 -13.96435 -13.57831 -12.53895 -12.32295 -12.19364 -11.95246 -11.69521 -11.47939 -11.19014 -11.12635 -10.58383 -10.55279 -10.37047 -9.86128 -9.70112 -9.24306 -9.19184 -8.79541 -8.74037 -8.18204 -6.58396 -4.00963 0.66600 0.86955 1.60941 2.32191 2.93496 3.08572 3.17494 3.20787 3.45184 3.64969 3.91109 4.08723 4.26737 4.59543 4.72175 4.74825 4.75890 5.09864 5.18711 5.38544 5.67892 5.76385 5.83876 5.89940 5.95001 6.37608 6.43977 6.64266 7.39110 7.48436 7.78931 7.83807 8.32973 8.37657 8.96867 9.30498 9.77692 10.58179 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.035451 B = 0.002501 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.641889 B =11190.920705 C =11847.901061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.105 0.895 9 N -0.545 5.545 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.126 3.874 13 N -0.712 5.712 14 C 0.703 3.297 15 O -0.572 6.572 16 N -0.682 5.682 17 C 0.234 3.766 18 C -0.206 4.206 19 C 0.137 3.863 20 N -0.498 5.498 21 C 0.194 3.806 22 Cl -0.029 7.029 23 C -0.161 4.161 24 H 0.276 0.724 25 H 0.397 0.603 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.410 0.590 29 H 0.415 0.585 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.558 -19.317 -0.268 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.369 5.369 14 C 0.403 3.597 15 O -0.448 6.448 16 N -0.330 5.330 17 C 0.129 3.871 18 C -0.229 4.229 19 C -0.020 4.020 20 N -0.211 5.211 21 C 0.030 3.970 22 Cl 0.000 7.000 23 C -0.185 4.185 24 H 0.086 0.914 25 H 0.230 0.770 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.248 0.752 29 H 0.252 0.748 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.678 -20.041 -0.444 20.224 hybrid contribution 0.860 1.905 0.099 2.093 sum 3.538 -18.136 -0.345 18.481 Atomic orbital electron populations 1.69601 1.06038 1.28785 1.48835 1.25340 0.95675 0.99999 0.96595 0.85861 0.78798 0.80062 0.79193 1.19729 1.20795 1.19730 1.19682 0.93446 0.81937 1.48620 0.87675 1.41779 1.09535 1.04435 1.62245 1.19659 0.88271 0.84912 0.86028 1.90494 1.13680 1.86768 1.57651 1.20897 0.91066 0.84669 1.03591 1.44786 1.11804 1.02967 1.77328 1.15829 0.85023 0.80651 0.78233 1.90968 1.13520 1.83723 1.56636 1.42564 1.10723 1.03155 1.76572 1.17571 0.93631 0.83696 0.92230 1.21980 1.04321 0.93287 1.03305 1.22425 0.90611 0.95477 0.93452 1.67036 1.08415 1.35957 1.09722 1.21390 0.91074 0.89253 0.95269 1.98410 1.35772 1.95132 1.70715 1.21879 0.98831 0.96537 1.01213 0.91419 0.76957 0.89543 0.89593 0.75161 0.74846 0.83650 0.81427 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 13.05 55.50 0.72 -22.53 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.31 -8.09 9.68 -14.93 -0.14 -8.24 16 8 H 0.11 2.87 7.16 -52.49 -0.38 2.50 16 9 N -0.55 -12.97 5.29 -10.96 -0.06 -13.03 16 10 C 0.43 9.21 7.85 -10.99 -0.09 9.12 16 11 O -0.60 -14.49 15.24 5.55 0.08 -14.41 16 12 C 0.13 2.13 6.15 -5.20 -0.03 2.10 16 13 N -0.71 -10.55 5.53 -66.42 -0.37 -10.91 16 14 C 0.70 10.04 8.33 -86.92 -0.72 9.32 16 15 O -0.57 -9.94 14.04 5.30 0.07 -9.86 16 16 N -0.68 -7.16 5.36 -14.07 -0.08 -7.24 16 17 C 0.23 2.56 6.33 -83.50 -0.53 2.03 16 18 C -0.21 -1.67 10.06 -39.26 -0.39 -2.07 16 19 C 0.14 1.18 11.17 -17.60 -0.20 0.98 16 20 N -0.50 -5.80 10.34 -10.45 -0.11 -5.91 16 21 C 0.19 2.40 7.27 -17.50 -0.13 2.28 16 22 Cl -0.03 -0.34 29.10 -51.86 -1.51 -1.85 16 23 C -0.16 -2.03 8.50 -39.22 -0.33 -2.37 16 24 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.40 9.07 7.90 -40.82 -0.32 8.75 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.41 5.79 7.46 -40.82 -0.30 5.49 16 29 H 0.41 2.99 8.84 -40.82 -0.36 2.62 16 30 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.16 2.24 6.47 -52.49 -0.34 1.90 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.45 308.19 -6.81 -38.26 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -2.53 Total: 14.11 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: -2.66 Total: 13.75 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.12 Total: -59.62 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.16 Total: -24.27 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.45 -6.81 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806379142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.370 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds