Wall clock time and date at job start Tue Mar 31 2020 03:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.32210 * 119.82231 * 2 1 4 4 O 1.21255 * 122.89726 * 0.02562 * 3 2 1 5 5 C 1.51119 * 114.20675 * 180.02562 * 3 2 1 6 6 S 1.82384 * 103.49404 * 359.79042 * 5 3 2 7 7 C 1.36752 * 119.81598 * 180.02562 * 2 1 3 8 8 C 1.36446 * 126.26503 * 359.95806 * 7 2 1 9 9 C 1.40395 * 119.99637 * 318.31896 * 8 7 2 10 10 O 1.21902 * 120.00681 * 7.53457 * 9 8 7 11 11 N 1.34778 * 119.99713 * 187.53327 * 9 8 7 12 12 C 1.47157 * 120.98144 * 5.37234 * 11 9 8 13 13 C 1.53298 * 108.38517 * 230.51473 * 12 11 9 14 14 O 1.42962 * 109.21973 * 307.69902 * 13 12 11 15 15 C 1.42956 * 114.16891 * 62.58435 * 14 13 12 16 16 C 1.47149 * 120.98584 * 185.35438 * 11 9 8 17 17 C 1.50705 * 109.67788 * 9.75884 * 16 11 9 18 18 N 1.27946 * 119.99977 * 256.17323 * 17 16 11 19 19 Si 1.86801 * 119.99989 * 76.18239 * 17 16 11 20 20 H 1.48503 * 109.47084 * 64.01124 * 19 17 16 21 21 H 1.48493 * 109.47110 * 184.01883 * 19 17 16 22 22 H 1.48507 * 109.46572 * 304.01559 * 19 17 16 23 23 H 1.09006 * 109.46977 * 278.16297 * 1 2 3 24 24 H 1.09007 * 109.47031 * 38.15812 * 1 2 3 25 25 H 1.08992 * 109.47575 * 158.16002 * 1 2 3 26 26 H 1.08995 * 110.61969 * 118.50442 * 5 3 2 27 27 H 1.09004 * 110.61439 * 241.49642 * 5 3 2 28 28 H 1.07994 * 119.99881 * 138.31624 * 8 7 2 29 29 H 1.08998 * 109.67891 * 350.23844 * 12 11 9 30 30 H 1.09003 * 109.67914 * 110.79062 * 12 11 9 31 31 H 1.08995 * 109.51121 * 187.77277 * 13 12 11 32 32 H 1.09000 * 109.51371 * 67.62295 * 13 12 11 33 33 H 1.08994 * 109.51802 * 57.33854 * 15 14 13 34 34 H 1.09004 * 109.51235 * 177.44373 * 15 14 13 35 35 H 1.09007 * 109.68194 * 249.21238 * 16 11 9 36 36 H 0.96998 * 119.99944 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1225 1.1470 0.0000 4 8 1.5667 2.2247 0.0005 5 6 3.6264 0.9991 -0.0006 6 16 3.8764 -0.8075 0.0054 7 6 2.1449 -1.1865 -0.0005 8 6 1.5917 -2.4338 -0.0003 9 6 0.4775 -2.7073 0.8090 10 8 -0.0800 -1.8018 1.4050 11 7 0.0243 -3.9711 0.9268 12 6 0.7481 -5.0957 0.3130 13 6 -0.2499 -5.9251 -0.5033 14 8 -1.3668 -6.2638 0.3224 15 6 -2.1113 -5.1369 0.7908 16 6 -1.2088 -4.2671 1.6733 17 6 -1.9176 -2.9813 2.0128 18 7 -1.8632 -2.5158 3.2033 19 14 -2.8759 -2.0671 0.6954 20 1 -4.0130 -2.9060 0.2385 21 1 -3.3941 -0.7929 1.2546 22 1 -1.9822 -1.7760 -0.4544 23 1 -0.3633 0.1459 1.0173 24 1 -0.3633 0.8081 -0.6350 25 1 -0.3634 -0.9538 -0.3823 26 1 4.0557 1.4463 -0.8971 27 1 4.0563 1.4459 0.8959 28 1 2.0109 -3.2105 -0.6226 29 1 1.5311 -4.7144 -0.3423 30 1 1.1906 -5.7164 1.0921 31 1 0.2344 -6.8369 -0.8526 32 1 -0.5928 -5.3434 -1.3589 33 1 -2.4610 -4.5523 -0.0600 34 1 -2.9667 -5.4817 1.3718 35 1 -0.9632 -4.8044 2.5895 36 1 -2.3198 -1.6884 3.4219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820296684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:06 Heat of formation + Delta-G solvation = 7.425327 kcal Electronic energy + Delta-G solvation = -23691.911196 eV Core-core repulsion = 20193.314723 eV Total energy + Delta-G solvation = -3498.596473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 299.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.63629 -41.61496 -39.60139 -38.09568 -36.63642 -35.72434 -33.09545 -32.29865 -32.04963 -29.14152 -28.12751 -25.93399 -25.17468 -23.17003 -22.22330 -21.49965 -19.75470 -19.48553 -18.61230 -18.12935 -17.99637 -17.78670 -17.44813 -16.83166 -16.36633 -16.10376 -15.98910 -15.64871 -15.52288 -15.42659 -14.96386 -14.56262 -14.35011 -14.24732 -13.91731 -13.51626 -13.37501 -13.32776 -12.95539 -12.62318 -12.54984 -12.36026 -12.19299 -11.79241 -11.72067 -11.51640 -11.13078 -10.38570 -10.08697 -9.81409 -9.54248 -8.78250 -0.84804 -0.16285 0.31390 0.82816 0.99287 1.05693 1.22946 1.34061 1.51379 1.72032 2.12446 2.20113 2.66380 2.78201 3.38179 3.67713 3.82437 3.83599 3.94594 3.97197 4.06327 4.17009 4.22045 4.23457 4.29355 4.35457 4.58377 4.60712 4.70790 4.71795 4.85222 4.91974 4.93455 5.01865 5.38352 5.52629 6.09795 6.14338 6.33071 6.97174 7.11734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.538 5.538 3 C 0.511 3.489 4 O -0.514 6.514 5 C -0.146 4.146 6 S -0.011 6.011 7 C 0.234 3.766 8 C -0.314 4.314 9 C 0.561 3.439 10 O -0.575 6.575 11 N -0.607 5.607 12 C 0.071 3.929 13 C 0.037 3.963 14 O -0.386 6.386 15 C 0.053 3.947 16 C 0.146 3.854 17 C 0.024 3.976 18 N -0.647 5.647 19 Si 0.957 3.043 20 H -0.239 1.239 21 H -0.269 1.269 22 H -0.236 1.236 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.178 0.822 27 H 0.175 0.825 28 H 0.190 0.810 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -4.173 -5.442 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.256 5.256 3 C 0.300 3.700 4 O -0.389 6.389 5 C -0.296 4.296 6 S 0.234 5.766 7 C 0.016 3.984 8 C -0.352 4.352 9 C 0.358 3.642 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.050 4.050 13 C -0.040 4.040 14 O -0.304 6.304 15 C -0.025 4.025 16 C 0.041 3.959 17 C -0.224 4.224 18 N -0.265 5.265 19 Si 0.776 3.224 20 H -0.163 1.163 21 H -0.193 1.193 22 H -0.160 1.160 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.195 0.805 27 H 0.192 0.808 28 H 0.207 0.793 29 H 0.145 0.855 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.800 -3.683 -4.859 7.759 hybrid contribution -1.460 1.639 0.165 2.201 sum 3.339 -2.044 -4.694 6.112 Atomic orbital electron populations 1.22538 0.76183 1.03977 1.03312 1.45491 1.10679 1.05719 1.63718 1.20489 0.90818 0.83280 0.75443 1.90844 1.73018 1.27362 1.47694 1.24716 0.93509 0.97600 1.13791 1.87229 0.98722 1.02819 1.87823 1.22921 0.95796 0.88241 0.91480 1.20735 1.06368 0.96085 1.12038 1.16619 0.83141 0.81967 0.82520 1.90751 1.59937 1.44112 1.51118 1.48099 1.25080 1.07128 1.53867 1.22815 0.95849 0.87523 0.98856 1.23314 0.86623 1.01749 0.92303 1.88017 1.43144 1.30724 1.68542 1.23085 0.94031 0.87948 0.97453 1.20960 0.85119 0.93581 0.96202 1.29831 0.96508 0.96653 0.99374 1.68018 1.19611 1.16754 1.22082 0.85610 0.78696 0.79127 0.78970 1.16297 1.19349 1.16023 0.90789 0.91517 0.88211 0.80474 0.80779 0.79326 0.85472 0.89679 0.85025 0.91477 0.91862 0.85840 0.89281 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 7.63 127.77 0.97 1.44 16 2 N -0.54 -1.76 2.92 -660.56 -1.93 -3.69 16 3 C 0.51 1.66 7.79 88.18 0.69 2.34 16 4 O -0.51 -5.65 17.07 -2.95 -0.05 -5.70 16 5 C -0.15 0.93 7.36 71.37 0.53 1.45 16 6 S -0.01 0.06 23.35 -56.49 -1.32 -1.26 16 7 C 0.23 -0.14 6.66 83.51 0.56 0.41 16 8 C -0.31 0.73 8.66 22.38 0.19 0.92 16 9 C 0.56 1.35 5.82 84.77 0.49 1.84 16 10 O -0.58 -4.35 7.04 -5.00 -0.04 -4.39 16 11 N -0.61 0.25 3.00 -809.34 -2.43 -2.18 16 12 C 0.07 -0.52 6.54 86.35 0.56 0.04 16 13 C 0.04 -0.27 6.99 72.08 0.50 0.23 16 14 O -0.39 0.36 10.74 -148.98 -1.60 -1.24 16 15 C 0.05 -0.09 5.79 72.08 0.42 0.33 16 16 C 0.15 0.25 3.29 44.22 0.15 0.40 16 17 C 0.02 0.11 2.93 88.68 0.26 0.37 16 18 N -0.65 -5.58 13.30 24.11 0.32 -5.26 16 19 Si 0.96 3.07 23.72 68.60 1.63 4.70 16 20 H -0.24 -0.20 7.10 99.48 0.71 0.51 16 21 H -0.27 -1.70 7.11 99.48 0.71 -0.99 16 22 H -0.24 -0.59 5.27 99.48 0.52 -0.06 16 23 H 0.07 0.69 6.82 -2.38 -0.02 0.67 16 24 H 0.07 0.38 7.74 -2.38 -0.02 0.36 16 25 H 0.10 0.44 3.34 -2.39 -0.01 0.43 16 26 H 0.18 -2.00 8.14 -2.39 -0.02 -2.02 16 27 H 0.17 -1.69 8.14 -2.38 -0.02 -1.71 16 28 H 0.19 -1.79 5.81 -2.91 -0.02 -1.80 16 29 H 0.13 -1.63 5.40 -2.39 -0.01 -1.65 16 30 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.13 -1.51 8.14 -2.39 -0.02 -1.53 16 32 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.06 -0.19 5.94 -2.39 -0.01 -0.20 16 34 H 0.12 -0.48 8.14 -2.38 -0.02 -0.50 16 35 H 0.09 0.36 8.13 -2.38 -0.02 0.34 16 36 H 0.34 2.48 8.23 -92.71 -0.76 1.72 16 Total: 0.00 -17.76 290.34 0.86 -16.90 By element: Atomic # 1 Polarization: -8.62 SS G_CDS: 0.95 Total: -7.67 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.32 Total: 9.79 kcal Atomic # 7 Polarization: -7.09 SS G_CDS: -4.04 Total: -11.13 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.69 Total: -11.33 kcal Atomic # 14 Polarization: 3.07 SS G_CDS: 1.63 Total: 4.70 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.32 Total: -1.26 kcal Total: -17.76 0.86 -16.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820296684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.328 kcal (2) G-P(sol) polarization free energy of solvation -17.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds