Wall clock time and date at job start Tue Mar 31 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29025 * 124.91881 * 2 1 4 4 C 1.31783 * 117.12171 * 180.02562 * 3 2 1 5 5 C 1.50707 * 122.74328 * 180.02562 * 4 3 2 6 6 C 1.33630 * 114.50354 * 359.97438 * 4 3 2 7 7 C 1.50697 * 126.03963 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47266 * 89.99962 * 7 6 4 9 9 O 1.20822 * 119.99958 * 0.02562 * 8 7 6 10 10 O 1.34234 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.45196 * 116.99938 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47016 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99980 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99643 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99435 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00513 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99989 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46988 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47330 * 299.99869 * 19 17 15 23 23 S 1.70976 * 124.91401 * 180.31613 * 2 1 3 24 24 H 1.09001 * 109.47031 * 89.97205 * 1 2 3 25 25 H 1.08995 * 109.47101 * 209.97437 * 1 2 3 26 26 H 1.09000 * 109.46837 * 329.97658 * 1 2 3 27 27 H 1.09006 * 109.46446 * 269.98874 * 5 4 3 28 28 H 1.08994 * 109.47504 * 29.99423 * 5 4 3 29 29 H 1.09003 * 109.46619 * 150.00077 * 5 4 3 30 30 H 1.09004 * 109.47205 * 330.00055 * 7 6 4 31 31 H 1.08997 * 109.47395 * 210.00548 * 7 6 4 32 32 H 1.08996 * 109.47465 * 299.99911 * 11 10 8 33 33 H 1.08999 * 109.47008 * 59.99921 * 11 10 8 34 34 H 0.96994 * 120.00272 * 359.97438 * 14 12 11 35 35 H 0.97005 * 120.00218 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 -0.0005 5 6 4.5309 2.0245 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3574 -0.8996 -0.0004 8 6 5.8315 -1.0658 1.4204 9 8 5.0905 -0.8063 2.3387 10 8 7.0770 -1.5023 1.6657 11 6 7.4656 -1.6379 3.0581 12 6 8.8857 -2.1363 3.1369 13 8 9.5087 -2.3559 2.1197 14 7 9.4630 -2.3388 4.3378 15 6 10.7551 -2.7917 4.4095 16 1 11.3101 -2.9865 3.5038 17 6 11.3505 -3.0000 5.6476 18 7 10.6754 -2.7625 6.7497 19 14 13.1107 -3.6177 5.7454 20 1 14.0131 -2.6497 5.0716 21 1 13.5084 -3.7559 7.1694 22 1 13.2101 -4.9379 5.0729 23 16 2.4856 -1.4020 -0.0077 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.7668 2.3011 -1.0277 28 1 4.0909 2.8787 0.5144 29 1 5.4435 1.7217 0.5133 30 1 5.9949 -0.1801 -0.5143 31 1 5.4057 -1.8597 -0.5143 32 1 7.3923 -0.6690 3.5519 33 1 6.8035 -2.3488 3.5525 34 1 8.9646 -2.1635 5.1513 35 1 11.0909 -2.9083 7.6141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885694884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:47 Heat of formation + Delta-G solvation = -85.735803 kcal Electronic energy + Delta-G solvation = -20707.878483 eV Core-core repulsion = 17218.897980 eV Total energy + Delta-G solvation = -3488.980503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61088 -39.88470 -38.15745 -36.19888 -34.12604 -34.01712 -31.43550 -31.21068 -29.41734 -28.44202 -25.98607 -24.51837 -22.98150 -21.28129 -19.60578 -18.96888 -18.20760 -18.08819 -17.66836 -16.43584 -16.34910 -15.63400 -15.19949 -15.06963 -14.50191 -14.30644 -13.97875 -13.77103 -13.55347 -13.52039 -12.96808 -12.92287 -12.67281 -12.31535 -12.24731 -12.08936 -11.97699 -11.63255 -11.31664 -11.12432 -10.51120 -10.49925 -10.44532 -10.30227 -9.84048 -9.61083 -9.45326 -8.78754 -8.53932 -8.09997 -6.51288 -3.93549 0.42682 1.10860 1.52001 2.24902 2.44934 2.84031 3.14407 3.21969 3.26765 3.71941 3.82339 4.10428 4.36766 4.65786 4.71455 4.74543 5.04462 5.09237 5.10427 5.13396 5.19918 5.21455 5.40708 5.47200 5.53397 5.59972 5.67354 5.73763 6.03150 6.08621 6.58309 7.46210 7.53850 7.80028 7.93891 8.46786 9.05393 9.37574 9.87396 10.65832 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.040425 B = 0.002548 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.480497 B =10985.293799 C =11095.256781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.472 5.472 4 C 0.086 3.914 5 C -0.082 4.082 6 C -0.220 4.220 7 C -0.033 4.033 8 C 0.457 3.543 9 O -0.503 6.503 10 O -0.324 6.324 11 C 0.061 3.939 12 C 0.438 3.562 13 O -0.576 6.576 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 S 0.135 5.865 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 5.114 -12.400 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.230 4.230 3 N -0.187 5.187 4 C -0.046 4.046 5 C -0.141 4.141 6 C -0.341 4.341 7 C -0.073 4.073 8 C 0.298 3.702 9 O -0.391 6.391 10 O -0.239 6.239 11 C -0.016 4.016 12 C 0.223 3.777 13 O -0.461 6.461 14 N -0.189 5.189 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.538 5.538 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 S 0.392 5.608 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.229 0.771 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.368 4.430 -12.577 22.698 hybrid contribution 1.033 0.476 0.941 1.476 sum -17.335 4.907 -11.636 21.447 Atomic orbital electron populations 1.20448 0.85098 1.04334 1.03830 1.26948 1.01709 0.91180 1.03167 1.66149 1.04323 1.31654 1.16612 1.20130 0.90283 0.93881 1.00329 1.20412 0.95966 0.94799 1.02959 1.24931 0.98331 0.95957 1.14892 1.19566 0.90174 1.05415 0.92112 1.23476 0.80373 0.74089 0.92266 1.90680 1.55661 1.46285 1.46471 1.86539 1.30475 1.76502 1.30347 1.22761 0.96979 1.02724 0.79171 1.19309 0.87096 0.86177 0.85159 1.90561 1.64612 1.56445 1.34433 1.41702 1.13806 1.57603 1.05813 1.19679 0.88267 1.40970 0.94321 0.87644 1.25321 1.00510 0.97294 0.94625 1.69608 1.38076 1.48102 0.97983 0.85848 0.81378 0.79475 0.77135 1.19733 1.20863 1.19735 1.83894 0.97079 1.11855 1.67984 0.89567 0.90031 0.89219 0.90295 0.90290 0.90729 0.85394 0.86220 0.89517 0.89558 0.77149 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.46 36.01 0.38 -0.13 16 2 C 0.05 0.50 7.39 -13.45 -0.10 0.41 16 3 N -0.47 -6.01 10.53 -8.05 -0.08 -6.09 16 4 C 0.09 1.07 6.74 -84.22 -0.57 0.50 16 5 C -0.08 -0.83 9.82 36.01 0.35 -0.47 16 6 C -0.22 -2.62 5.08 -35.92 -0.18 -2.81 16 7 C -0.03 -0.36 5.74 -29.04 -0.17 -0.53 16 8 C 0.46 7.01 7.95 36.01 0.29 7.30 16 9 O -0.50 -8.85 15.78 -18.75 -0.30 -9.15 16 10 O -0.32 -5.88 9.76 -45.91 -0.45 -6.33 16 11 C 0.06 1.16 5.94 36.01 0.21 1.37 16 12 C 0.44 10.51 7.86 -10.98 -0.09 10.42 16 13 O -0.58 -15.90 16.08 -14.12 -0.23 -16.13 16 14 N -0.55 -13.93 5.29 -10.96 -0.06 -13.99 16 15 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 16 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 S 0.14 1.42 23.18 -107.50 -2.49 -1.07 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.75 7.35 -51.93 -0.38 0.37 16 30 H 0.13 1.13 7.43 -51.93 -0.39 0.75 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 33 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 34 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -34.07 329.97 -7.03 -41.10 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.98 Total: 6.26 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.11 Total: 8.14 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.58 Total: -43.40 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.97 Total: -31.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.49 Total: -1.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.07 -7.03 -41.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885694884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.638 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds