Wall clock time and date at job start Tue Mar 31 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29025 * 124.91881 * 2 1 4 4 C 1.31783 * 117.12171 * 180.02562 * 3 2 1 5 5 C 1.50707 * 122.74328 * 180.02562 * 4 3 2 6 6 C 1.33630 * 114.50354 * 359.97438 * 4 3 2 7 7 C 1.50697 * 126.03963 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47266 * 89.99962 * 7 6 4 9 9 O 1.20822 * 119.99958 * 0.02562 * 8 7 6 10 10 O 1.34234 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.45196 * 116.99938 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47016 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99980 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99643 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99435 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00513 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99989 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46988 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47330 * 299.99869 * 19 17 15 23 23 S 1.70976 * 124.91401 * 180.31613 * 2 1 3 24 24 H 1.09001 * 109.47031 * 89.97205 * 1 2 3 25 25 H 1.08995 * 109.47101 * 209.97437 * 1 2 3 26 26 H 1.09000 * 109.46837 * 329.97658 * 1 2 3 27 27 H 1.09006 * 109.46446 * 269.98874 * 5 4 3 28 28 H 1.08994 * 109.47504 * 29.99423 * 5 4 3 29 29 H 1.09003 * 109.46619 * 150.00077 * 5 4 3 30 30 H 1.09004 * 109.47205 * 330.00055 * 7 6 4 31 31 H 1.08997 * 109.47395 * 210.00548 * 7 6 4 32 32 H 1.08996 * 109.47465 * 299.99911 * 11 10 8 33 33 H 1.08999 * 109.47008 * 59.99921 * 11 10 8 34 34 H 0.96994 * 120.00272 * 359.97438 * 14 12 11 35 35 H 0.97005 * 120.00218 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 -0.0005 5 6 4.5309 2.0245 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3574 -0.8996 -0.0004 8 6 5.8315 -1.0658 1.4204 9 8 5.0905 -0.8063 2.3387 10 8 7.0770 -1.5023 1.6657 11 6 7.4656 -1.6379 3.0581 12 6 8.8857 -2.1363 3.1369 13 8 9.5087 -2.3559 2.1197 14 7 9.4630 -2.3388 4.3378 15 6 10.7551 -2.7917 4.4095 16 1 11.3101 -2.9865 3.5038 17 6 11.3505 -3.0000 5.6476 18 7 10.6754 -2.7625 6.7497 19 14 13.1107 -3.6177 5.7454 20 1 14.0131 -2.6497 5.0716 21 1 13.5084 -3.7559 7.1694 22 1 13.2101 -4.9379 5.0729 23 16 2.4856 -1.4020 -0.0077 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.7668 2.3011 -1.0277 28 1 4.0909 2.8787 0.5144 29 1 5.4435 1.7217 0.5133 30 1 5.9949 -0.1801 -0.5143 31 1 5.4057 -1.8597 -0.5143 32 1 7.3923 -0.6690 3.5519 33 1 6.8035 -2.3488 3.5525 34 1 8.9646 -2.1635 5.1513 35 1 11.0909 -2.9083 7.6141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885694884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:47 Heat of formation + Delta-G solvation = -108.054924 kcal Electronic energy + Delta-G solvation = -20708.846313 eV Core-core repulsion = 17218.897980 eV Total energy + Delta-G solvation = -3489.948333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81081 -40.87805 -40.01784 -37.60203 -36.04125 -34.97203 -33.43037 -32.09145 -30.18256 -29.94844 -27.14792 -26.26299 -23.73672 -22.50925 -21.44360 -20.09634 -19.86096 -19.04231 -18.95133 -17.89654 -17.75502 -17.23290 -16.48424 -16.08044 -15.99284 -15.81806 -15.61463 -14.65271 -14.54008 -14.51151 -14.14466 -14.05382 -13.59787 -13.56355 -13.54090 -13.27892 -12.94034 -12.92061 -12.86136 -12.49523 -12.14118 -12.13273 -11.89264 -11.76534 -11.57667 -10.67653 -10.53380 -10.29646 -10.13106 -9.59229 -8.53068 -6.03975 -0.41218 0.31666 0.69745 1.04717 1.32674 1.37362 1.44228 1.55104 1.79820 1.86076 2.29913 3.04529 3.10074 3.12433 3.47625 3.74799 3.91673 4.01240 4.09225 4.13378 4.20347 4.40627 4.42502 4.53784 4.65090 4.70438 4.74418 4.92841 5.08545 5.26653 5.32201 5.36235 5.87837 6.43953 6.59666 6.71482 7.01698 7.38601 7.91752 8.63719 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.040425 B = 0.002548 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.480497 B =10985.293799 C =11095.256781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.503 5.503 4 C 0.074 3.926 5 C -0.082 4.082 6 C -0.242 4.242 7 C -0.026 4.026 8 C 0.460 3.540 9 O -0.527 6.527 10 O -0.340 6.340 11 C 0.072 3.928 12 C 0.437 3.563 13 O -0.616 6.616 14 N -0.558 5.558 15 C -0.339 4.339 16 H 0.086 0.914 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.269 1.269 23 S 0.147 5.853 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 5.009 -12.770 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.230 4.230 3 N -0.219 5.219 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.362 4.362 7 C -0.065 4.065 8 C 0.303 3.697 9 O -0.416 6.416 10 O -0.255 6.255 11 C -0.005 4.005 12 C 0.223 3.777 13 O -0.503 6.503 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.194 1.194 23 S 0.404 5.596 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.059 4.331 -12.935 23.438 hybrid contribution 1.116 0.532 1.034 1.612 sum -17.943 4.863 -11.900 22.073 Atomic orbital electron populations 1.20654 0.82540 1.05277 1.05379 1.27659 1.03289 0.90790 1.01254 1.66220 1.04722 1.32678 1.18274 1.20500 0.90696 0.94687 1.00002 1.20468 0.95380 0.94103 1.04167 1.25051 0.98943 0.96227 1.16018 1.19714 0.90160 1.07301 0.89348 1.24269 0.78964 0.72717 0.93740 1.90668 1.55920 1.47368 1.47641 1.86547 1.32246 1.77199 1.29492 1.22500 0.93711 1.03811 0.80506 1.20083 0.88764 0.84721 0.84083 1.90526 1.66259 1.57910 1.35627 1.41749 1.13488 1.57785 1.06523 1.19697 0.89561 1.43215 0.94274 0.89644 1.26147 1.04323 0.96695 0.93848 1.69671 1.39572 1.47936 0.98434 0.84905 0.76417 0.78853 0.77693 1.19418 1.19456 1.19414 1.83792 0.96570 1.11574 1.67702 0.87582 0.88257 0.89040 0.88307 0.90653 0.90918 0.83026 0.84010 0.87714 0.87797 0.76613 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.46 71.24 0.75 -0.13 16 2 C 0.05 0.94 7.39 88.52 0.65 1.59 16 3 N -0.50 -12.32 10.53 -179.39 -1.89 -14.21 16 4 C 0.07 1.74 6.74 41.52 0.28 2.02 16 5 C -0.08 -1.57 9.82 71.24 0.70 -0.87 16 6 C -0.24 -5.43 5.08 24.64 0.13 -5.30 16 7 C -0.03 -0.53 5.74 29.10 0.17 -0.36 16 8 C 0.46 13.58 7.95 71.24 0.57 14.14 16 9 O -0.53 -18.04 15.78 21.98 0.35 -17.69 16 10 O -0.34 -12.04 9.76 -45.11 -0.44 -12.48 16 11 C 0.07 2.69 5.94 71.24 0.42 3.11 16 12 C 0.44 21.16 7.86 87.66 0.69 21.85 16 13 O -0.62 -34.62 16.08 15.72 0.25 -34.37 16 14 N -0.56 -28.53 5.29 -306.97 -1.62 -30.16 16 15 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 16 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 18 N -0.92 -48.64 13.05 21.66 0.28 -48.35 16 19 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 S 0.15 2.86 23.18 -56.49 -1.31 1.55 16 24 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.39 7.35 -2.39 -0.02 1.37 16 30 H 0.15 2.37 7.43 -2.38 -0.02 2.35 16 31 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.10 3.53 8.13 -2.39 -0.02 3.51 16 33 H 0.10 3.51 8.13 -2.39 -0.02 3.49 16 34 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 35 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16 Total: -1.00 -73.23 329.97 3.69 -69.54 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.41 Total: 24.42 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 5.63 Total: 17.93 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -3.23 Total: -92.72 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: 0.16 Total: -64.53 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.31 Total: 1.55 kcal Total: -73.23 3.69 -69.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885694884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.511 kcal (2) G-P(sol) polarization free energy of solvation -73.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds