Wall clock time and date at job start Tue Mar 31 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99564 * 2 1 4 4 H 1.48500 * 109.46912 * 239.99909 * 3 2 1 5 5 H 1.48493 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46777 * 120.00013 * 3 2 1 7 7 C 1.38810 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64533 * 0.05598 * 9 7 2 11 11 C 1.54912 * 104.83306 * 204.07767 * 10 9 7 12 12 H 1.08995 * 111.03828 * 204.90274 * 11 10 9 13 13 O 1.42903 * 110.99758 * 81.06681 * 11 10 9 14 14 C 1.55149 * 101.58182 * 322.99349 * 11 10 9 15 15 H 1.09002 * 110.72219 * 277.13706 * 14 11 10 16 16 C 1.53001 * 110.72077 * 153.85835 * 14 11 10 17 17 N 1.46504 * 109.47036 * 175.00109 * 16 14 11 18 18 C 1.34774 * 119.99981 * 180.02562 * 17 16 14 19 19 O 1.21570 * 120.00281 * 359.97438 * 18 17 16 20 20 C 1.47757 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.39349 * 124.11785 * 179.97438 * 20 18 17 22 22 N 1.30089 * 112.14683 * 179.97438 * 21 20 18 23 23 S 1.55916 * 108.75287 * 0.02562 * 22 21 20 24 24 N 1.31487 * 124.11544 * 359.69901 * 20 18 17 25 25 C 1.47014 * 125.65028 * 179.97438 * 9 7 2 26 26 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 27 27 H 1.09009 * 110.36844 * 85.24387 * 10 9 7 28 28 H 1.09002 * 110.37005 * 322.91886 * 10 9 7 29 29 H 0.96700 * 114.00311 * 67.80834 * 13 11 10 30 30 H 1.08996 * 109.47758 * 294.99881 * 16 14 11 31 31 H 1.08998 * 109.46845 * 55.00181 * 16 14 11 32 32 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 33 33 H 1.08006 * 123.92801 * 359.97438 * 21 20 18 34 34 H 1.08999 * 109.88292 * 59.56690 * 25 9 7 35 35 H 1.09001 * 109.88362 * 298.40882 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1413 -2.5332 0.0011 11 6 -0.4016 -3.9321 0.6135 12 1 -1.3588 -4.3331 0.2804 13 8 -0.3371 -3.8865 2.0404 14 6 0.7786 -4.7524 0.0294 15 1 0.5465 -5.0985 -0.9778 16 6 1.1231 -5.9308 0.9425 17 7 2.1570 -6.7532 0.3093 18 6 2.6198 -7.8536 0.9349 19 8 2.1795 -8.1635 2.0249 20 6 3.6622 -8.6833 0.2961 21 6 4.2014 -9.8355 0.8648 22 7 5.1017 -10.3837 0.1023 23 16 5.2480 -9.5297 -1.1939 24 7 4.1902 -8.4273 -0.8805 25 6 1.9320 -3.7274 0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5267 -2.4874 -1.0175 28 1 -0.5994 -1.7586 0.6161 29 1 -1.0545 -3.3844 2.4507 30 1 1.4916 -5.5553 1.8970 31 1 0.2307 -6.5340 1.1094 32 1 2.5086 -6.5058 -0.5602 33 1 3.9062 -10.2279 1.8268 34 1 2.5585 -3.8506 0.8851 35 1 2.5284 -3.8644 -0.9003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957891084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:08 Heat of formation + Delta-G solvation = -19.873116 kcal Electronic energy + Delta-G solvation = -21556.104830 eV Core-core repulsion = 18102.273098 eV Total energy + Delta-G solvation = -3453.831732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16779 -40.46482 -39.58683 -36.32417 -36.18631 -34.72340 -33.87496 -31.45659 -29.56321 -28.54971 -27.17445 -25.45646 -23.69840 -22.24020 -21.52418 -20.99134 -20.37253 -19.15804 -18.84686 -17.95657 -17.18567 -16.96530 -16.79421 -16.28762 -16.15086 -15.72449 -15.57301 -15.12535 -14.58001 -14.41574 -13.94581 -13.68414 -13.27082 -13.16630 -13.03082 -12.62877 -12.52094 -12.36759 -12.26524 -12.09568 -12.04439 -11.87337 -11.82912 -11.66495 -11.17728 -10.79743 -10.64668 -10.34536 -10.06441 -8.85318 -7.78347 -5.20741 -0.65528 0.34947 0.45681 0.63731 1.46337 1.49072 1.55275 1.96842 2.01975 2.49286 3.28112 3.34183 3.42338 3.60898 3.69113 3.90616 3.96101 4.01441 4.04561 4.44341 4.48840 4.60689 4.65504 4.83158 4.91254 5.01021 5.23034 5.32131 5.38041 5.40330 5.51284 5.78200 6.29551 6.36552 6.95880 7.00396 7.11907 7.78449 8.41091 9.23419 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.003309 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.268121 B = 8458.663012 C = 9302.849332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.978 3.022 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.126 3.874 11 C 0.095 3.905 12 H 0.092 0.908 13 O -0.569 6.569 14 C -0.092 4.092 15 H 0.113 0.887 16 C 0.155 3.845 17 N -0.700 5.700 18 C 0.602 3.398 19 O -0.555 6.555 20 C -0.005 4.005 21 C 0.090 3.910 22 N -0.598 5.598 23 S 0.798 5.202 24 N -0.566 5.566 25 C 0.142 3.858 26 H 0.248 0.752 27 H 0.001 0.999 28 H 0.080 0.920 29 H 0.389 0.611 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.415 0.585 33 H 0.226 0.774 34 H 0.014 0.986 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -19.731 -3.172 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.035 3.965 12 H 0.110 0.890 13 O -0.376 6.376 14 C -0.111 4.111 15 H 0.131 0.869 16 C 0.031 3.969 17 N -0.350 5.350 18 C 0.383 3.617 19 O -0.433 6.433 20 C -0.178 4.178 21 C -0.102 4.102 22 N -0.440 5.440 23 S 0.839 5.161 24 N -0.418 5.418 25 C 0.017 3.983 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.098 0.902 29 H 0.238 0.762 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.252 0.748 33 H 0.242 0.758 34 H 0.032 0.968 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.945 -20.363 -4.153 21.912 hybrid contribution -1.015 1.942 1.106 2.454 sum 5.930 -18.421 -3.047 19.590 Atomic orbital electron populations 1.69978 1.05958 1.25078 1.58608 1.25549 0.96695 1.00686 1.02677 0.85157 0.77197 0.78964 0.78034 1.20462 1.21707 1.20715 1.19380 0.90887 0.83984 1.42665 0.90711 1.44640 1.02668 1.00674 1.86667 1.22470 0.84620 0.95463 0.97384 1.23086 0.97202 0.95018 0.81212 0.89023 1.86373 1.55524 1.76801 1.18902 1.22454 0.95260 0.93481 0.99900 0.86881 1.21059 0.90483 0.89957 0.95375 1.45865 1.40608 1.25149 1.23421 1.16962 0.80360 0.80374 0.84008 1.90819 1.59730 1.71817 1.20951 1.22240 1.03587 0.99838 0.92086 1.23863 0.92065 0.91726 1.02553 1.72187 1.23684 1.35616 1.12532 1.78792 1.23622 0.98073 1.15570 1.72266 1.16900 1.33317 1.19345 1.21439 0.94647 0.84837 0.97396 0.94271 0.98111 0.90165 0.76209 0.92319 0.90073 0.74812 0.75819 0.96838 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.10 10.09 21.65 0.22 -54.88 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 3 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.24 -13.55 10.27 84.03 0.86 -12.69 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -31.72 3.39 -691.99 -2.35 -34.07 16 10 C 0.13 5.89 5.62 86.86 0.49 6.38 16 11 C 0.10 3.30 4.17 31.98 0.13 3.44 16 12 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 13 O -0.57 -20.02 12.33 -148.98 -1.84 -21.85 16 14 C -0.09 -2.92 2.89 -9.61 -0.03 -2.95 16 15 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 16 C 0.15 4.54 4.50 86.38 0.39 4.93 16 17 N -0.70 -18.32 5.47 -466.05 -2.55 -20.87 16 18 C 0.60 16.32 7.82 86.76 0.68 17.00 16 19 O -0.56 -18.00 16.81 -3.94 -0.07 -18.07 16 20 C 0.00 -0.10 6.81 41.98 0.29 0.18 16 21 C 0.09 1.69 11.22 85.22 0.96 2.65 16 22 N -0.60 -10.49 11.41 -92.49 -1.06 -11.55 16 23 S 0.80 10.71 23.69 -56.49 -1.34 9.37 16 24 N -0.57 -11.12 11.00 -80.61 -0.89 -12.01 16 25 C 0.14 5.82 6.75 86.73 0.59 6.40 16 26 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 28 H 0.08 4.28 5.87 -2.39 -0.01 4.27 16 29 H 0.39 11.14 9.12 -74.06 -0.68 10.46 16 30 H 0.06 2.06 7.52 -2.39 -0.02 2.05 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.42 9.84 8.06 -92.71 -0.75 9.09 16 33 H 0.23 3.49 8.06 -2.91 -0.02 3.46 16 34 H 0.01 0.59 7.68 -2.39 -0.02 0.58 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.39 313.76 -3.28 -74.67 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.27 Total: 19.42 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 4.82 Total: 22.23 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -6.62 Total: -133.37 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.90 Total: -39.93 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 10.71 SS G_CDS: -1.34 Total: 9.37 kcal Total: -71.39 -3.28 -74.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.801 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds