Wall clock time and date at job start Tue Mar 31 2020 03:56:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86799 * 120.00179 * 2 1
4 4 H 1.48508 * 109.47064 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47003 * 299.99850 * 3 2 1
6 6 H 1.48501 * 109.47044 * 59.99923 * 3 2 1
7 7 C 1.38810 * 119.99893 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00379 * 180.02562 * 7 2 1
9 9 N 1.36945 * 120.00064 * 359.97438 * 7 2 1
10 10 C 1.47423 * 125.64368 * 359.97438 * 9 7 2
11 11 C 1.54914 * 104.83031 * 204.14604 * 10 9 7
12 12 H 1.09002 * 111.00586 * 204.91807 * 11 10 9
13 13 O 1.42901 * 111.03638 * 81.08079 * 11 10 9
14 14 C 1.55154 * 101.58036 * 322.99171 * 11 10 9
15 15 H 1.09004 * 110.72216 * 276.95712 * 14 11 10
16 16 C 1.53001 * 110.71910 * 153.86533 * 14 11 10
17 17 N 1.46502 * 109.47467 * 175.00233 * 16 14 11
18 18 C 1.34775 * 120.00173 * 179.97438 * 17 16 14
19 19 O 1.21612 * 120.00297 * 359.97438 * 18 17 16
20 20 C 1.47170 * 119.99809 * 179.97438 * 18 17 16
21 21 C 1.38248 * 128.47510 * 180.02562 * 20 18 17
22 22 N 1.31242 * 111.88610 * 180.02562 * 21 20 18
23 23 N 1.27336 * 120.04042 * 359.97438 * 22 21 20
24 24 S 1.56637 * 109.74107 * 359.70304 * 23 22 21
25 25 C 1.47018 * 125.64951 * 179.97438 * 9 7 2
26 26 H 0.97005 * 119.99656 * 0.02562 * 1 2 3
27 27 H 1.08998 * 110.36740 * 85.31492 * 10 9 7
28 28 H 1.08994 * 110.37022 * 322.98640 * 10 9 7
29 29 H 0.96698 * 113.99847 * 64.60362 * 13 11 10
30 30 H 1.09005 * 109.47406 * 294.99942 * 16 14 11
31 31 H 1.08999 * 109.47808 * 54.99877 * 16 14 11
32 32 H 0.97002 * 119.99332 * 359.97438 * 17 16 14
33 33 H 1.07995 * 124.05755 * 0.02562 * 21 20 18
34 34 H 1.08992 * 109.88436 * 59.50397 * 25 9 7
35 35 H 1.08999 * 109.88221 * 298.33557 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0016
10 6 -0.1416 -2.5331 0.0028
11 6 -0.4013 -3.9317 0.6162
12 1 -1.3589 -4.3324 0.2838
13 8 -0.3357 -3.8863 2.0430
14 6 0.7782 -4.7524 0.0311
15 1 0.5437 -5.1016 -0.9745
16 6 1.1236 -5.9304 0.9442
17 7 2.1568 -6.7532 0.3103
18 6 2.6208 -7.8528 0.9364
19 8 2.1822 -8.1619 2.0278
20 6 3.6583 -8.6796 0.2993
21 6 4.2541 -9.8317 0.7778
22 7 5.1448 -10.3065 -0.0610
23 7 5.3657 -9.7076 -1.1628
24 16 4.4441 -8.4459 -1.2732
25 6 1.9317 -3.7275 0.0017
26 1 -0.4850 0.8401 -0.0004
27 1 -0.5281 -2.4878 -1.0153
28 1 -0.5989 -1.7582 0.6179
29 1 -1.0244 -3.3440 2.4513
30 1 1.4932 -5.5545 1.8983
31 1 0.2314 -6.5336 1.1125
32 1 2.5069 -6.5065 -0.5600
33 1 4.0152 -10.2865 1.7278
34 1 2.5591 -3.8504 0.8845
35 1 2.5271 -3.8650 -0.9009
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000957901364.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:05
Heat of formation + Delta-G solvation = 21.905561 kcal
Electronic energy + Delta-G solvation = -21474.482945 eV
Core-core repulsion = 18022.462873 eV
Total energy + Delta-G solvation = -3452.020072 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 1.44 seconds
Orbital eigenvalues (eV)
-41.11986 -39.75798 -38.31007 -35.09965 -34.62092 -32.63239 -32.10368 -29.92598
-28.17176 -27.48576 -25.60125 -24.02359 -22.58911 -21.01493 -20.35787 -19.81300
-19.38596 -17.68801 -17.36993 -16.40691 -16.18578 -16.11700 -15.18277 -15.02261
-14.90798 -14.34080 -14.26294 -13.86701 -13.31569 -13.00871 -12.80068 -12.46059
-12.30067 -12.03340 -11.50235 -11.31742 -10.87217 -10.75374 -10.64789 -10.49648
-10.43685 -10.40734 -10.16094 -10.13859 -9.95530 -9.89879 -9.21913 -9.15703
-8.74448 -6.91138 -5.75179 -3.15393 -0.58029 0.48742 1.15937 1.67177
2.75784 2.81462 3.34790 3.40881 3.42913 3.71002 4.37482 4.39752
4.47790 4.66153 5.01080 5.20697 5.26445 5.29229 5.44160 5.52595
5.79877 5.90812 6.02218 6.20847 6.22388 6.34675 6.52409 6.75024
7.15340 7.21554 7.32639 7.51735 7.68843 7.84621 8.16592 8.30424
9.12448 9.73786 10.36910 11.29792
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.022437 B = 0.003426 C = 0.003110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1247.627731 B = 8170.016663 C = 9002.188480
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C -0.012 4.012
3 Si 0.915 3.085
4 H -0.280 1.280
5 H -0.290 1.290
6 H -0.290 1.290
7 C -0.220 4.220
8 H 0.078 0.922
9 N -0.598 5.598
10 C 0.125 3.875
11 C 0.083 3.917
12 H 0.056 0.944
13 O -0.559 6.559
14 C -0.108 4.108
15 H 0.088 0.912
16 C 0.140 3.860
17 N -0.715 5.715
18 C 0.598 3.402
19 O -0.517 6.517
20 C -0.282 4.282
21 C 0.071 3.929
22 N -0.253 5.253
23 N -0.259 5.259
24 S 0.426 5.574
25 C 0.143 3.857
26 H 0.252 0.748
27 H 0.020 0.980
28 H 0.112 0.888
29 H 0.377 0.623
30 H 0.086 0.914
31 H 0.071 0.929
32 H 0.399 0.601
33 H 0.216 0.784
34 H 0.029 0.971
35 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.420 -15.447 -2.013 15.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.207 4.207
3 Si 0.746 3.254
4 H -0.205 1.205
5 H -0.217 1.217
6 H -0.217 1.217
7 C -0.348 4.348
8 H 0.096 0.904
9 N -0.323 5.323
10 C 0.000 4.000
11 C 0.022 3.978
12 H 0.073 0.927
13 O -0.364 6.364
14 C -0.127 4.127
15 H 0.106 0.894
16 C 0.018 3.982
17 N -0.366 5.366
18 C 0.380 3.620
19 O -0.393 6.393
20 C -0.423 4.423
21 C -0.096 4.096
22 N -0.117 5.117
23 N -0.240 5.240
24 S 0.560 5.440
25 C 0.017 3.983
26 H 0.062 0.938
27 H 0.038 0.962
28 H 0.130 0.870
29 H 0.224 0.776
30 H 0.104 0.896
31 H 0.090 0.910
32 H 0.234 0.766
33 H 0.233 0.767
34 H 0.047 0.953
35 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges 3.701 -15.964 -2.942 16.649
hybrid contribution -0.539 1.224 0.826 1.572
sum 3.162 -14.740 -2.116 15.223
Atomic orbital electron populations
1.69751 1.04922 1.24733 1.57992 1.24765 0.95758 0.97756 1.02390
0.85980 0.78679 0.83465 0.77263 1.20518 1.21749 1.21702 1.19131
0.90568 0.82368 1.42708 0.90386 1.44348 1.01513 0.99741 1.86737
1.22610 0.85745 0.92922 0.98714 1.23198 0.94982 0.98128 0.81474
0.92663 1.86371 1.57859 1.73297 1.18898 1.22539 0.97646 0.94265
0.98275 0.89410 1.21391 0.89660 0.90225 0.96962 1.46051 1.41887
1.25924 1.22769 1.16456 0.80409 0.80353 0.84768 1.90864 1.58271
1.70702 1.19446 1.28174 1.08250 1.03856 1.02044 1.24481 0.91480
0.92258 1.01332 1.70705 1.16988 1.25957 0.98037 1.78871 1.21352
1.07624 1.16160 1.82718 1.22277 1.25865 1.13110 1.21339 0.93309
0.85716 0.97930 0.93754 0.96223 0.86997 0.77604 0.89582 0.91029
0.76649 0.76734 0.95321 0.96220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 54.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -25.75 10.09 55.49 0.56 -25.19 16
2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16
3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16
4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
7 C -0.22 -5.90 10.27 -15.06 -0.15 -6.06 16
8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16
9 N -0.60 -14.45 3.39 -170.08 -0.58 -15.03 16
10 C 0.13 2.79 5.62 -2.53 -0.01 2.77 16
11 C 0.08 1.41 4.16 -24.58 -0.10 1.31 16
12 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
13 O -0.56 -9.64 12.33 -35.23 -0.43 -10.07 16
14 C -0.11 -1.66 2.89 -88.79 -0.26 -1.91 16
15 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16
16 C 0.14 1.96 4.50 -4.04 -0.02 1.94 16
17 N -0.72 -8.36 5.47 -61.47 -0.34 -8.69 16
18 C 0.60 7.47 7.80 -12.63 -0.10 7.37 16
19 O -0.52 -8.16 16.98 5.27 0.09 -8.07 16
20 C -0.28 -2.88 6.81 -35.95 -0.25 -3.12 16
21 C 0.07 0.71 11.55 -17.80 -0.21 0.50 16
22 N -0.25 -2.85 11.54 30.36 0.35 -2.50 16
23 N -0.26 -2.85 12.51 60.35 0.75 -2.09 16
24 S 0.43 3.59 23.05 -107.50 -2.48 1.11 16
25 C 0.14 2.74 6.75 -3.07 -0.02 2.72 16
26 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16
27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
28 H 0.11 2.82 5.87 -51.93 -0.31 2.51 16
29 H 0.38 5.35 9.12 45.56 0.42 5.76 16
30 H 0.09 1.43 7.52 -51.93 -0.39 1.04 16
31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
32 H 0.40 3.78 7.90 -40.82 -0.32 3.45 16
33 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16
34 H 0.03 0.58 7.68 -51.93 -0.40 0.18 16
35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
LS Contribution 315.09 15.07 4.75 4.75
Total: -1.00 -32.53 315.09 -6.64 -39.18
By element:
Atomic # 1 Polarization: 8.12 SS G_CDS: -3.08 Total: 5.03 kcal
Atomic # 6 Polarization: 6.33 SS G_CDS: -1.21 Total: 5.12 kcal
Atomic # 7 Polarization: -54.26 SS G_CDS: 0.75 Total: -53.51 kcal
Atomic # 8 Polarization: -17.80 SS G_CDS: -0.35 Total: -18.15 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal
Atomic # 16 Polarization: 3.59 SS G_CDS: -2.48 Total: 1.11 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -32.53 -6.64 -39.18 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000957901364.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.081 kcal
(2) G-P(sol) polarization free energy of solvation -32.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.44 seconds