Wall clock time and date at job start Tue Mar 31 2020 03:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46867 * 299.99944 * 3 2 1 6 6 H 1.48503 * 109.47274 * 59.99743 * 3 2 1 7 7 C 1.38820 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99405 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.65182 * 0.04306 * 9 7 2 11 11 C 1.54367 * 107.29077 * 181.05675 * 10 9 7 12 12 H 1.08999 * 110.70363 * 263.79740 * 11 10 9 13 13 O 1.42893 * 110.75850 * 140.50727 * 11 10 9 14 14 C 1.55163 * 102.92260 * 22.13696 * 11 10 9 15 15 H 1.08996 * 111.00228 * 82.63422 * 14 11 10 16 16 C 1.52998 * 111.00582 * 206.45715 * 14 11 10 17 17 N 1.46496 * 109.46846 * 181.81787 * 16 14 11 18 18 C 1.34777 * 119.99613 * 179.97438 * 17 16 14 19 19 O 1.21610 * 120.00238 * 0.02562 * 18 17 16 20 20 C 1.47446 * 119.99890 * 180.02562 * 18 17 16 21 21 C 1.37981 * 124.15624 * 179.72774 * 20 18 17 22 22 S 1.72105 * 104.03784 * 179.97438 * 21 20 18 23 23 N 1.56412 * 96.15160 * 0.28186 * 22 21 20 24 24 N 1.27418 * 109.87285 * 359.82755 * 23 22 21 25 25 C 1.47426 * 125.65027 * 179.97438 * 9 7 2 26 26 H 0.96998 * 119.99867 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.87669 * 300.44215 * 10 9 7 28 28 H 1.08996 * 109.88187 * 61.44776 * 10 9 7 29 29 H 0.96696 * 114.00500 * 66.47985 * 13 11 10 30 30 H 1.09002 * 109.47106 * 61.81839 * 16 14 11 31 31 H 1.08999 * 109.46731 * 301.81727 * 16 14 11 32 32 H 0.96996 * 120.00516 * 0.02562 * 17 16 14 33 33 H 1.08005 * 127.98252 * 0.02562 * 21 20 18 34 34 H 1.09004 * 110.36434 * 37.06659 * 25 9 7 35 35 H 1.09000 * 110.36688 * 274.75004 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0014 11 6 -0.4491 -4.0444 0.0300 12 1 -0.6327 -4.4192 -0.9769 13 8 -1.5630 -4.3159 0.8829 14 6 0.8517 -4.6558 0.6146 15 1 0.8569 -4.5956 1.7029 16 6 1.0368 -6.1008 0.1472 17 7 2.2491 -6.6581 0.7520 18 6 2.6148 -7.9269 0.4820 19 8 1.9386 -8.6089 -0.2641 20 6 3.8346 -8.4880 1.0911 21 6 4.2850 -9.7749 0.8789 22 16 5.7212 -9.8754 1.8219 23 7 5.6583 -8.4153 2.3793 24 7 4.6318 -7.8189 1.9165 25 6 1.9333 -3.7312 0.0017 26 1 -0.4850 0.8400 0.0004 27 1 -0.5578 -2.0515 0.8845 28 1 -0.5545 -2.0827 -0.8996 29 1 -2.4010 -3.9550 0.5625 30 1 1.1295 -6.1223 -0.9387 31 1 0.1739 -6.6939 0.4500 32 1 2.7882 -6.1142 1.3473 33 1 3.8396 -10.5419 0.2626 34 1 2.8331 -3.7404 0.6170 35 1 2.1660 -4.0424 -1.0167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958283605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:35 Heat of formation + Delta-G solvation = 16.244500 kcal Electronic energy + Delta-G solvation = -21410.290391 eV Core-core repulsion = 17958.024837 eV Total energy + Delta-G solvation = -3452.265554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33044 -39.44711 -38.18939 -35.23163 -34.71746 -32.58602 -32.11513 -29.82427 -27.78598 -27.25860 -25.70667 -24.23190 -22.75043 -21.09718 -20.38338 -20.11100 -19.14758 -17.22159 -16.95731 -16.55181 -16.32096 -16.03217 -15.57561 -15.16468 -14.85525 -14.27146 -14.01142 -13.66093 -13.21354 -12.91827 -12.66219 -12.50408 -12.35803 -12.05006 -11.49037 -11.24206 -11.00442 -10.83397 -10.69268 -10.58925 -10.41289 -10.39754 -10.24607 -10.02583 -9.83807 -9.82626 -9.23661 -9.08387 -8.66374 -6.90375 -5.76004 -3.10288 -0.26337 0.58710 1.19210 1.21064 2.97701 2.99378 3.38250 3.43980 3.46362 3.57746 4.37972 4.43985 4.62844 4.72925 4.95901 5.06263 5.18426 5.41996 5.49186 5.65647 5.82284 5.95464 6.01902 6.19092 6.27627 6.38039 6.53425 6.80895 7.10755 7.38341 7.44493 7.49599 7.74858 7.97773 8.17739 8.19332 9.15854 9.76279 10.40290 11.35722 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.003332 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.467844 B = 8401.344821 C = 9545.844716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.084 3.916 12 H 0.057 0.943 13 O -0.566 6.566 14 C -0.109 4.109 15 H 0.091 0.909 16 C 0.132 3.868 17 N -0.700 5.700 18 C 0.601 3.399 19 O -0.530 6.530 20 C -0.019 4.019 21 C -0.237 4.237 22 S 0.455 5.545 23 N -0.287 5.287 24 N -0.208 5.208 25 C 0.140 3.860 26 H 0.252 0.748 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.376 0.624 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.209 0.791 34 H 0.045 0.955 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 -20.657 1.835 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.024 3.976 12 H 0.075 0.925 13 O -0.371 6.371 14 C -0.129 4.129 15 H 0.110 0.890 16 C 0.009 3.991 17 N -0.351 5.351 18 C 0.382 3.618 19 O -0.406 6.406 20 C -0.166 4.166 21 C -0.394 4.394 22 S 0.591 5.409 23 N -0.267 5.267 24 N -0.078 5.078 25 C 0.014 3.986 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.223 0.777 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.226 0.774 34 H 0.063 0.937 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.065 -20.829 2.808 22.512 hybrid contribution -1.044 1.489 -0.984 2.068 sum 7.020 -19.341 1.824 20.656 Atomic orbital electron populations 1.69949 1.04929 1.25027 1.57097 1.24818 0.95764 0.97782 1.02071 0.86013 0.78746 0.83575 0.77245 1.20442 1.21734 1.21690 1.19128 0.90531 0.82216 1.43858 0.90162 1.44313 1.01319 0.99961 1.87350 1.21841 0.85221 0.88473 1.01873 1.23114 0.85028 0.97938 0.91562 0.92474 1.86419 1.18879 1.80126 1.51704 1.22626 0.96278 0.92064 1.01883 0.89028 1.21506 0.85858 0.93671 0.98089 1.45909 1.27784 1.12620 1.48767 1.16624 0.82116 0.82199 0.80863 1.90838 1.53125 1.59903 1.36724 1.22752 1.00228 0.92371 1.01294 1.28883 1.02613 1.01254 1.06626 1.81537 1.16152 1.16516 1.26744 1.78702 1.17503 1.06405 1.24104 1.71555 0.99093 1.28578 1.08594 1.21636 0.94156 0.85755 0.97065 0.93747 0.92393 0.93566 0.77687 0.90852 0.90670 0.75115 0.77418 0.93713 0.95872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.31 55.49 0.57 -26.22 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.16 3.39 -170.03 -0.58 -15.74 16 10 C 0.15 3.58 5.16 -3.04 -0.02 3.57 16 11 C 0.08 1.54 3.80 -24.87 -0.09 1.44 16 12 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 13 O -0.57 -9.72 13.39 -35.23 -0.47 -10.19 16 14 C -0.11 -1.88 2.79 -88.46 -0.25 -2.13 16 15 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.13 1.95 5.12 -4.05 -0.02 1.93 16 17 N -0.70 -9.67 5.45 -61.38 -0.33 -10.01 16 18 C 0.60 8.37 7.81 -12.51 -0.10 8.28 16 19 O -0.53 -8.51 16.80 5.27 0.09 -8.42 16 20 C -0.02 -0.22 6.87 -83.78 -0.58 -0.80 16 21 C -0.24 -1.95 11.21 30.64 0.34 -1.61 16 22 S 0.45 3.02 23.38 -107.50 -2.51 0.51 16 23 N -0.29 -3.18 12.49 60.35 0.75 -2.42 16 24 N -0.21 -2.61 11.24 32.74 0.37 -2.25 16 25 C 0.14 2.81 6.56 -2.52 -0.02 2.79 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.06 1.55 7.30 -51.93 -0.38 1.17 16 28 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 29 H 0.38 4.99 9.12 45.56 0.42 5.40 16 30 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.41 5.47 8.02 -40.82 -0.33 5.14 16 33 H 0.21 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -33.72 316.98 -6.50 -40.22 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -3.16 Total: 6.08 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.97 Total: 6.65 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.78 Total: -56.64 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.38 Total: -18.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.51 Total: 0.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.72 -6.50 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958283605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.465 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds