Wall clock time and date at job start Tue Mar 31 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46867 * 299.99944 * 3 2 1 6 6 H 1.48503 * 109.47274 * 59.99743 * 3 2 1 7 7 C 1.38820 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99405 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.65182 * 0.04306 * 9 7 2 11 11 C 1.54367 * 107.29077 * 181.05675 * 10 9 7 12 12 H 1.08999 * 110.70363 * 263.79740 * 11 10 9 13 13 O 1.42893 * 110.75850 * 140.50727 * 11 10 9 14 14 C 1.55163 * 102.92260 * 22.13696 * 11 10 9 15 15 H 1.08996 * 111.00228 * 82.63422 * 14 11 10 16 16 C 1.52998 * 111.00582 * 206.45715 * 14 11 10 17 17 N 1.46496 * 109.46846 * 181.81787 * 16 14 11 18 18 C 1.34777 * 119.99613 * 179.97438 * 17 16 14 19 19 O 1.21610 * 120.00238 * 0.02562 * 18 17 16 20 20 C 1.47446 * 119.99890 * 180.02562 * 18 17 16 21 21 C 1.37981 * 124.15624 * 179.72774 * 20 18 17 22 22 S 1.72105 * 104.03784 * 179.97438 * 21 20 18 23 23 N 1.56412 * 96.15160 * 0.28186 * 22 21 20 24 24 N 1.27418 * 109.87285 * 359.82755 * 23 22 21 25 25 C 1.47426 * 125.65027 * 179.97438 * 9 7 2 26 26 H 0.96998 * 119.99867 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.87669 * 300.44215 * 10 9 7 28 28 H 1.08996 * 109.88187 * 61.44776 * 10 9 7 29 29 H 0.96696 * 114.00500 * 66.47985 * 13 11 10 30 30 H 1.09002 * 109.47106 * 61.81839 * 16 14 11 31 31 H 1.08999 * 109.46731 * 301.81727 * 16 14 11 32 32 H 0.96996 * 120.00516 * 0.02562 * 17 16 14 33 33 H 1.08005 * 127.98252 * 0.02562 * 21 20 18 34 34 H 1.09004 * 110.36434 * 37.06659 * 25 9 7 35 35 H 1.09000 * 110.36688 * 274.75004 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0014 11 6 -0.4491 -4.0444 0.0300 12 1 -0.6327 -4.4192 -0.9769 13 8 -1.5630 -4.3159 0.8829 14 6 0.8517 -4.6558 0.6146 15 1 0.8569 -4.5956 1.7029 16 6 1.0368 -6.1008 0.1472 17 7 2.2491 -6.6581 0.7520 18 6 2.6148 -7.9269 0.4820 19 8 1.9386 -8.6089 -0.2641 20 6 3.8346 -8.4880 1.0911 21 6 4.2850 -9.7749 0.8789 22 16 5.7212 -9.8754 1.8219 23 7 5.6583 -8.4153 2.3793 24 7 4.6318 -7.8189 1.9165 25 6 1.9333 -3.7312 0.0017 26 1 -0.4850 0.8400 0.0004 27 1 -0.5578 -2.0515 0.8845 28 1 -0.5545 -2.0827 -0.8996 29 1 -2.4010 -3.9550 0.5625 30 1 1.1295 -6.1223 -0.9387 31 1 0.1739 -6.6939 0.4500 32 1 2.7882 -6.1142 1.3473 33 1 3.8396 -10.5419 0.2626 34 1 2.8331 -3.7404 0.6170 35 1 2.1660 -4.0424 -1.0167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958283605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:34 Heat of formation + Delta-G solvation = -12.165822 kcal Electronic energy + Delta-G solvation = -21411.522355 eV Core-core repulsion = 17958.024837 eV Total energy + Delta-G solvation = -3453.497518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14510 -40.58533 -39.67489 -36.65673 -36.19184 -34.08387 -33.22287 -31.45538 -29.39135 -28.21514 -27.27182 -25.71112 -23.96191 -22.27848 -21.83835 -21.46446 -20.21895 -18.88148 -18.36815 -17.74575 -17.20987 -17.07207 -16.96194 -16.33967 -16.17199 -15.69969 -15.68114 -14.90239 -14.69051 -14.41531 -14.02316 -13.70102 -13.65411 -13.22191 -13.11487 -13.04337 -12.75975 -12.46705 -12.27221 -11.93597 -11.79647 -11.66846 -11.37703 -11.23984 -11.16563 -10.89768 -10.82477 -10.74643 -10.21427 -8.94330 -7.87443 -5.23781 -0.92673 -0.03363 0.31231 0.54853 1.45984 1.46595 1.57083 1.98218 2.00144 2.47222 2.73850 3.23165 3.33343 3.55284 3.61404 3.70048 3.86536 3.89784 4.14093 4.36546 4.40398 4.44772 4.59947 4.72222 4.86330 4.93787 5.17404 5.32217 5.41407 5.48570 5.70886 6.15787 6.19830 6.53219 6.90049 6.93060 7.06733 7.72940 8.36143 9.22729 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.003332 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.467844 B = 8401.344821 C = 9545.844716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.159 3.841 11 C 0.100 3.900 12 H 0.081 0.919 13 O -0.569 6.569 14 C -0.092 4.092 15 H 0.084 0.916 16 C 0.146 3.854 17 N -0.701 5.701 18 C 0.604 3.396 19 O -0.555 6.555 20 C -0.046 4.046 21 C -0.234 4.234 22 S 0.565 5.435 23 N -0.334 5.334 24 N -0.237 5.237 25 C 0.138 3.862 26 H 0.247 0.753 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.394 0.606 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.415 0.585 33 H 0.232 0.768 34 H 0.050 0.950 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -22.926 1.782 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.372 4.372 8 H 0.103 0.897 9 N -0.353 5.353 10 C 0.034 3.966 11 C 0.039 3.961 12 H 0.098 0.902 13 O -0.376 6.376 14 C -0.111 4.111 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.351 5.351 18 C 0.386 3.614 19 O -0.433 6.433 20 C -0.194 4.194 21 C -0.390 4.390 22 S 0.701 5.299 23 N -0.315 5.315 24 N -0.107 5.107 25 C 0.013 3.987 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.243 0.757 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.252 0.748 33 H 0.249 0.751 34 H 0.069 0.931 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.514 -23.117 2.765 25.151 hybrid contribution -1.402 2.037 -0.949 2.648 sum 8.112 -21.080 1.816 22.660 Atomic orbital electron populations 1.70164 1.06256 1.25257 1.58241 1.25660 0.96674 1.01053 1.02484 0.84998 0.78212 0.79356 0.76693 1.18985 1.21820 1.21967 1.19518 0.91095 0.83561 1.43039 0.89747 1.44618 1.02195 1.01222 1.87216 1.21629 0.84534 0.91944 0.98518 1.22867 0.86031 0.94057 0.93125 0.90159 1.86389 1.19508 1.79902 1.51849 1.22421 0.94511 0.93087 1.01127 0.89813 1.21270 0.86626 0.91716 0.98190 1.45861 1.27488 1.12969 1.48819 1.16833 0.82501 0.81729 0.80302 1.90815 1.54194 1.60388 1.37913 1.22516 1.00226 0.93806 1.02827 1.29296 1.03151 1.00427 1.06153 1.81133 1.13083 1.12438 1.23290 1.78324 1.17781 1.09517 1.25862 1.71588 0.99766 1.29874 1.09443 1.21790 0.95053 0.84010 0.97813 0.94362 0.96311 0.96642 0.75665 0.90490 0.90202 0.74838 0.75138 0.93144 0.94925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.99 10.31 21.65 0.22 -56.77 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.24 -13.66 10.28 84.04 0.86 -12.79 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.63 -31.99 3.39 -691.84 -2.35 -34.34 16 10 C 0.16 7.77 5.16 86.74 0.45 8.22 16 11 C 0.10 3.60 3.80 31.80 0.12 3.72 16 12 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 13 O -0.57 -18.95 13.39 -148.98 -1.99 -20.95 16 14 C -0.09 -3.09 2.79 -9.39 -0.03 -3.12 16 15 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 16 C 0.15 4.09 5.12 86.38 0.44 4.53 16 17 N -0.70 -18.69 5.45 -466.36 -2.54 -21.22 16 18 C 0.60 16.14 7.81 86.67 0.68 16.82 16 19 O -0.56 -17.07 16.80 -4.06 -0.07 -17.14 16 20 C -0.05 -1.02 6.87 41.36 0.28 -0.73 16 21 C -0.23 -3.22 11.21 67.76 0.76 -2.46 16 22 S 0.57 5.75 23.38 -56.49 -1.32 4.43 16 23 N -0.33 -6.86 12.49 37.02 0.46 -6.40 16 24 N -0.24 -5.75 11.24 -50.34 -0.57 -6.32 16 25 C 0.14 5.48 6.56 86.86 0.57 6.05 16 26 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.02 1.05 7.30 -2.39 -0.02 1.03 16 28 H 0.02 0.83 7.50 -2.39 -0.02 0.81 16 29 H 0.39 10.04 9.12 -74.06 -0.68 9.37 16 30 H 0.08 2.14 8.03 -2.39 -0.02 2.12 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.42 10.78 8.02 -92.71 -0.74 10.03 16 33 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.03 1.26 7.96 -2.39 -0.02 1.24 16 Total: -1.00 -74.65 316.98 -1.79 -76.43 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.27 Total: 17.36 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 4.60 Total: 16.96 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -4.77 Total: -125.05 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -2.06 Total: -38.09 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.32 Total: 4.43 kcal Total: -74.65 -1.79 -76.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958283605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.266 kcal (2) G-P(sol) polarization free energy of solvation -74.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds