Wall clock time and date at job start Tue Mar 31 2020 03:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48496 * 109.47037 * 274.43094 * 3 2 1 5 5 H 1.48509 * 109.47115 * 34.43145 * 3 2 1 6 6 H 1.48504 * 109.47231 * 154.42974 * 3 2 1 7 7 C 1.38810 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99994 * 163.17073 * 7 2 1 9 9 N 1.36938 * 119.99720 * 343.16600 * 7 2 1 10 10 C 1.47152 * 120.98755 * 333.63236 * 9 7 2 11 11 C 1.53289 * 108.38733 * 230.51741 * 10 9 7 12 12 O 1.42959 * 109.26467 * 307.72230 * 11 10 9 13 13 C 1.42960 * 114.17374 * 62.49686 * 12 11 10 14 14 H 1.08999 * 109.51402 * 57.45274 * 13 12 11 15 15 C 1.52997 * 109.51355 * 177.55432 * 13 12 11 16 16 N 1.46496 * 109.47113 * 299.89928 * 15 13 12 17 17 C 1.34778 * 119.99777 * 180.02562 * 16 15 13 18 18 O 1.21622 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.47176 * 120.00170 * 179.97438 * 17 16 15 20 20 C 1.38237 * 128.47928 * 179.69971 * 19 17 16 21 21 N 1.31240 * 111.89081 * 179.84938 * 20 19 17 22 22 N 1.27339 * 120.03555 * 0.49355 * 21 20 19 23 23 S 1.56637 * 109.74019 * 359.71169 * 22 21 20 24 24 C 1.47160 * 120.98016 * 153.61407 * 9 7 2 25 25 H 0.96992 * 120.00070 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.67563 * 350.23857 * 10 9 7 27 27 H 1.08994 * 109.67868 * 110.74927 * 10 9 7 28 28 H 1.08994 * 109.51505 * 67.61729 * 11 10 9 29 29 H 1.08998 * 109.51516 * 187.77319 * 11 10 9 30 30 H 1.09003 * 109.47215 * 179.89832 * 15 13 12 31 31 H 1.09000 * 109.47122 * 59.90537 * 15 13 12 32 32 H 0.96995 * 120.00012 * 0.02562 * 16 15 13 33 33 H 1.08002 * 124.05524 * 359.97438 * 20 19 17 34 34 H 1.09006 * 109.68009 * 9.75862 * 24 9 7 35 35 H 1.08995 * 109.70955 * 249.22709 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4040 2.1005 -1.3959 5 1 1.4976 2.6238 0.7917 6 1 3.5915 1.4150 0.6043 7 6 2.0103 -1.2021 -0.0005 8 1 3.0556 -1.2220 -0.2713 9 7 1.3696 -2.3628 0.3424 10 6 0.1978 -2.3468 1.2323 11 6 0.4251 -3.3714 2.3496 12 8 0.7651 -4.6334 1.7702 13 6 1.9801 -4.6235 1.0170 14 1 2.8005 -4.2925 1.6537 15 6 2.2719 -6.0333 0.4991 16 7 2.4104 -6.9509 1.6327 17 6 2.6717 -8.2552 1.4158 18 8 2.7920 -8.6704 0.2790 19 6 2.8115 -9.1770 2.5545 20 6 3.0706 -10.5348 2.5353 21 7 3.1318 -11.0384 3.7456 22 7 2.9502 -10.2879 4.7582 23 16 2.6810 -8.8188 4.2864 24 6 1.8324 -3.6629 -0.1685 25 1 -0.4850 0.8400 -0.0004 26 1 0.0785 -1.3531 1.6642 27 1 -0.6959 -2.6111 0.6672 28 1 1.2393 -3.0354 2.9916 29 1 -0.4856 -3.4751 2.9394 30 1 3.1974 -6.0246 -0.0765 31 1 1.4511 -6.3636 -0.1376 32 1 2.3141 -6.6198 2.5393 33 1 3.2083 -11.1115 1.6326 34 1 2.7955 -3.5408 -0.6643 35 1 1.1038 -4.0608 -0.8748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035305107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:15 Heat of formation + Delta-G solvation = 22.065710 kcal Electronic energy + Delta-G solvation = -21382.025057 eV Core-core repulsion = 17930.011930 eV Total energy + Delta-G solvation = -3452.013128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14512 -39.79021 -38.53371 -35.15195 -34.41396 -32.57307 -31.62909 -30.78172 -28.29487 -27.35129 -25.60795 -23.40588 -23.04861 -21.80238 -20.92263 -19.88795 -19.40456 -17.82304 -16.93884 -16.38012 -16.26447 -15.98538 -15.28611 -15.02836 -14.89495 -14.47562 -14.46264 -13.90858 -13.37603 -13.22604 -13.02749 -12.84392 -12.55826 -12.31495 -11.67271 -11.20077 -10.93459 -10.80589 -10.66008 -10.51545 -10.43584 -10.41736 -10.34545 -10.18739 -10.06270 -9.76918 -9.29011 -9.18161 -8.62072 -6.84190 -5.92057 -3.36063 -0.60600 0.46512 1.13732 1.64486 2.71163 2.76255 3.29037 3.36733 3.38324 3.68441 4.07827 4.35143 4.35853 4.48587 4.98276 5.23739 5.25291 5.32116 5.40405 5.66297 5.68459 5.87975 6.02769 6.10895 6.25915 6.27156 6.38226 6.64814 7.00480 7.12229 7.30062 7.43258 7.62960 7.72623 7.80600 8.25340 9.03364 9.65993 10.22242 11.16188 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.034433 B = 0.002988 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.973667 B = 9369.108398 C = 9653.691746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.391 6.391 13 C 0.063 3.937 14 H 0.061 0.939 15 C 0.130 3.870 16 N -0.708 5.708 17 C 0.598 3.402 18 O -0.519 6.519 19 C -0.282 4.282 20 C 0.072 3.928 21 N -0.253 5.253 22 N -0.259 5.259 23 S 0.428 5.572 24 C 0.122 3.878 25 H 0.256 0.744 26 H 0.095 0.905 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.404 0.596 33 H 0.216 0.784 34 H 0.065 0.935 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -14.672 7.787 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.003 3.997 14 H 0.079 0.921 15 C 0.007 3.993 16 N -0.359 5.359 17 C 0.380 3.620 18 O -0.396 6.396 19 C -0.423 4.423 20 C -0.095 4.095 21 N -0.117 5.117 22 N -0.241 5.241 23 S 0.562 5.438 24 C -0.006 4.006 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.238 0.762 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.282 -15.024 8.931 17.995 hybrid contribution 0.483 1.099 -1.105 1.632 sum 4.765 -13.925 7.826 16.669 Atomic orbital electron populations 1.70031 1.05299 1.25747 1.53520 1.25057 0.95351 0.98536 1.00617 0.86242 0.79146 0.83392 0.77753 1.21315 1.21448 1.20349 1.19184 0.92623 0.84389 1.42481 0.91308 1.44069 1.33652 1.01008 1.53009 1.21444 0.89150 0.98303 0.89761 1.23344 0.99128 0.84765 0.96579 1.87768 1.41271 1.32863 1.69135 1.22837 0.87738 0.93549 0.95598 0.92115 1.21583 1.02721 0.87099 0.87906 1.45830 1.71170 1.07393 1.11460 1.16470 0.77687 0.81448 0.86349 1.90863 1.50484 1.76629 1.21626 1.28132 1.14725 0.99360 1.00124 1.24483 0.97094 0.91161 0.96782 1.70710 1.15955 1.29241 0.95791 1.78868 1.18945 1.02157 1.24083 1.82739 1.48723 1.17127 0.95183 1.21434 0.99103 0.87240 0.92777 0.93441 0.88735 0.95305 0.93972 0.89903 0.89461 0.90001 0.76166 0.76718 0.91647 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 11.15 55.49 0.62 -24.53 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 20.74 29.59 -169.99 -5.03 15.71 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.26 -6.72 9.65 -15.06 -0.15 -6.86 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.08 3.05 -171.83 -0.52 -14.61 16 10 C 0.14 3.13 5.44 -3.54 -0.02 3.11 16 11 C 0.04 0.70 6.98 37.31 0.26 0.96 16 12 O -0.39 -6.58 10.14 -35.23 -0.36 -6.94 16 13 C 0.06 0.98 2.86 -26.58 -0.08 0.90 16 14 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 15 C 0.13 1.70 5.37 -4.05 -0.02 1.68 16 16 N -0.71 -8.07 5.45 -61.47 -0.33 -8.41 16 17 C 0.60 7.16 7.80 -12.63 -0.10 7.06 16 18 O -0.52 -7.78 16.98 5.26 0.09 -7.69 16 19 C -0.28 -2.78 6.81 -35.95 -0.25 -3.02 16 20 C 0.07 0.68 11.55 -17.80 -0.21 0.48 16 21 N -0.25 -2.77 11.54 30.36 0.35 -2.42 16 22 N -0.26 -2.77 12.51 60.35 0.75 -2.02 16 23 S 0.43 3.50 23.05 -107.50 -2.48 1.02 16 24 C 0.12 2.35 6.02 -3.53 -0.02 2.33 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.09 2.35 6.15 -51.93 -0.32 2.03 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 3.95 7.78 -40.82 -0.32 3.63 16 33 H 0.22 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -31.04 315.34 -6.80 -37.84 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.98 Total: 0.67 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.66 Total: 6.63 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.87 Total: -51.98 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.27 Total: -14.64 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.48 Total: 1.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.04 -6.80 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035305107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.904 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds