Wall clock time and date at job start Tue Mar 31 2020 03:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48496 * 109.47037 * 274.43094 * 3 2 1 5 5 H 1.48509 * 109.47115 * 34.43145 * 3 2 1 6 6 H 1.48504 * 109.47231 * 154.42974 * 3 2 1 7 7 C 1.38810 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99994 * 163.17073 * 7 2 1 9 9 N 1.36938 * 119.99720 * 343.16600 * 7 2 1 10 10 C 1.47152 * 120.98755 * 333.63236 * 9 7 2 11 11 C 1.53289 * 108.38733 * 230.51741 * 10 9 7 12 12 O 1.42959 * 109.26467 * 307.72230 * 11 10 9 13 13 C 1.42960 * 114.17374 * 62.49686 * 12 11 10 14 14 H 1.08999 * 109.51402 * 57.45274 * 13 12 11 15 15 C 1.52997 * 109.51355 * 177.55432 * 13 12 11 16 16 N 1.46496 * 109.47113 * 299.89928 * 15 13 12 17 17 C 1.34778 * 119.99777 * 180.02562 * 16 15 13 18 18 O 1.21622 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.47176 * 120.00170 * 179.97438 * 17 16 15 20 20 C 1.38237 * 128.47928 * 179.69971 * 19 17 16 21 21 N 1.31240 * 111.89081 * 179.84938 * 20 19 17 22 22 N 1.27339 * 120.03555 * 0.49355 * 21 20 19 23 23 S 1.56637 * 109.74019 * 359.71169 * 22 21 20 24 24 C 1.47160 * 120.98016 * 153.61407 * 9 7 2 25 25 H 0.96992 * 120.00070 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.67563 * 350.23857 * 10 9 7 27 27 H 1.08994 * 109.67868 * 110.74927 * 10 9 7 28 28 H 1.08994 * 109.51505 * 67.61729 * 11 10 9 29 29 H 1.08998 * 109.51516 * 187.77319 * 11 10 9 30 30 H 1.09003 * 109.47215 * 179.89832 * 15 13 12 31 31 H 1.09000 * 109.47122 * 59.90537 * 15 13 12 32 32 H 0.96995 * 120.00012 * 0.02562 * 16 15 13 33 33 H 1.08002 * 124.05524 * 359.97438 * 20 19 17 34 34 H 1.09006 * 109.68009 * 9.75862 * 24 9 7 35 35 H 1.08995 * 109.70955 * 249.22709 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4040 2.1005 -1.3959 5 1 1.4976 2.6238 0.7917 6 1 3.5915 1.4150 0.6043 7 6 2.0103 -1.2021 -0.0005 8 1 3.0556 -1.2220 -0.2713 9 7 1.3696 -2.3628 0.3424 10 6 0.1978 -2.3468 1.2323 11 6 0.4251 -3.3714 2.3496 12 8 0.7651 -4.6334 1.7702 13 6 1.9801 -4.6235 1.0170 14 1 2.8005 -4.2925 1.6537 15 6 2.2719 -6.0333 0.4991 16 7 2.4104 -6.9509 1.6327 17 6 2.6717 -8.2552 1.4158 18 8 2.7920 -8.6704 0.2790 19 6 2.8115 -9.1770 2.5545 20 6 3.0706 -10.5348 2.5353 21 7 3.1318 -11.0384 3.7456 22 7 2.9502 -10.2879 4.7582 23 16 2.6810 -8.8188 4.2864 24 6 1.8324 -3.6629 -0.1685 25 1 -0.4850 0.8400 -0.0004 26 1 0.0785 -1.3531 1.6642 27 1 -0.6959 -2.6111 0.6672 28 1 1.2393 -3.0354 2.9916 29 1 -0.4856 -3.4751 2.9394 30 1 3.1974 -6.0246 -0.0765 31 1 1.4511 -6.3636 -0.1376 32 1 2.3141 -6.6198 2.5393 33 1 3.2083 -11.1115 1.6326 34 1 2.7955 -3.5408 -0.6643 35 1 1.1038 -4.0608 -0.8748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035305107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:14 Heat of formation + Delta-G solvation = -1.269924 kcal Electronic energy + Delta-G solvation = -21383.036966 eV Core-core repulsion = 17930.011930 eV Total energy + Delta-G solvation = -3453.025037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.91650 -40.83162 -39.91085 -36.54814 -35.85447 -33.54064 -33.18409 -32.26068 -29.50526 -28.63885 -27.01839 -25.00698 -24.18888 -23.03335 -21.91865 -21.28054 -20.24541 -18.96721 -18.55466 -17.54929 -17.25989 -16.95456 -16.87986 -16.20360 -16.05316 -15.83327 -15.50421 -15.41154 -15.00359 -14.67483 -14.48372 -13.82520 -13.75749 -13.22768 -13.04266 -12.95315 -12.67769 -12.48523 -12.17432 -12.06308 -11.85945 -11.55859 -11.32379 -11.21244 -11.18519 -10.92906 -10.78855 -10.53284 -10.26641 -8.73991 -7.90476 -5.37458 -1.36477 -0.24420 0.41642 0.87607 1.47495 1.49469 1.58970 1.79100 1.85020 2.48887 2.77775 2.96202 3.25289 3.49602 3.58005 3.66882 3.97833 4.07576 4.27726 4.50183 4.54077 4.58795 4.64624 4.75049 4.77701 4.93163 5.07147 5.17471 5.26940 5.57926 5.63625 6.22964 6.26573 6.34408 6.55775 6.89063 7.07657 7.76115 8.28847 9.15549 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.034433 B = 0.002988 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.973667 B = 9369.108398 C = 9653.691746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.389 6.389 13 C 0.076 3.924 14 H 0.074 0.926 15 C 0.140 3.860 16 N -0.701 5.701 17 C 0.605 3.395 18 O -0.553 6.553 19 C -0.302 4.302 20 C 0.079 3.921 21 N -0.276 5.276 22 N -0.287 5.287 23 S 0.503 5.497 24 C 0.115 3.885 25 H 0.251 0.749 26 H 0.066 0.934 27 H -0.002 1.002 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.232 0.768 34 H 0.074 0.926 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -15.321 9.051 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.016 3.984 14 H 0.092 0.908 15 C 0.016 3.984 16 N -0.353 5.353 17 C 0.389 3.611 18 O -0.432 6.432 19 C -0.443 4.443 20 C -0.089 4.089 21 N -0.139 5.139 22 N -0.269 5.269 23 S 0.637 5.363 24 C -0.011 4.011 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.487 -15.706 10.230 19.531 hybrid contribution 0.100 1.300 -1.509 1.995 sum 5.588 -14.407 8.721 17.743 Atomic orbital electron populations 1.70188 1.06725 1.26007 1.55263 1.25811 0.96055 1.01588 1.01114 0.85238 0.78295 0.79437 0.77313 1.21555 1.21880 1.19078 1.19551 0.93030 0.85501 1.41365 0.90842 1.44357 1.33721 1.01974 1.53748 1.21316 0.87905 0.98438 0.90710 1.23157 1.00910 0.83501 0.94732 1.87786 1.41917 1.32074 1.69037 1.22694 0.87653 0.94084 0.93946 0.90807 1.21373 1.03010 0.85809 0.88199 1.45679 1.70954 1.07134 1.11495 1.16563 0.76752 0.81447 0.86362 1.90850 1.52000 1.77170 1.23144 1.27923 1.16292 0.99281 1.00784 1.24771 0.95919 0.91258 0.96972 1.70772 1.17122 1.29886 0.96078 1.78665 1.19696 1.03739 1.24770 1.82436 1.46029 1.14834 0.92991 1.21613 0.98960 0.86198 0.94308 0.93996 0.91583 0.98423 0.92775 0.87247 0.88184 0.90993 0.75022 0.75189 0.90738 0.96311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.47 11.15 21.65 0.24 -53.23 16 2 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 3 Si 0.97 42.82 29.59 68.60 2.03 44.85 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.26 -13.78 9.65 84.03 0.81 -12.97 16 8 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 9 N -0.61 -29.09 3.05 -697.54 -2.13 -31.22 16 10 C 0.14 6.45 5.44 86.35 0.47 6.92 16 11 C 0.05 1.82 6.98 72.08 0.50 2.32 16 12 O -0.39 -12.18 10.14 -148.98 -1.51 -13.69 16 13 C 0.08 2.20 2.86 30.69 0.09 2.29 16 14 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 15 C 0.14 3.35 5.37 86.38 0.46 3.82 16 16 N -0.70 -14.20 5.45 -466.63 -2.54 -16.74 16 17 C 0.60 13.27 7.80 86.59 0.68 13.95 16 18 O -0.55 -15.81 16.98 -4.10 -0.07 -15.88 16 19 C -0.30 -5.30 6.81 24.62 0.17 -5.13 16 20 C 0.08 1.36 11.55 84.78 0.98 2.34 16 21 N -0.28 -5.63 11.54 -57.87 -0.67 -6.30 16 22 N -0.29 -5.59 12.51 37.02 0.46 -5.13 16 23 S 0.50 6.87 23.05 -56.49 -1.30 5.57 16 24 C 0.12 4.37 6.02 86.35 0.52 4.89 16 25 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.07 3.37 6.15 -2.39 -0.01 3.35 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.41 6.73 7.78 -92.71 -0.72 6.00 16 33 H 0.23 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.07 2.63 7.96 -2.38 -0.02 2.61 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -67.24 315.34 0.03 -67.21 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.41 Total: 8.41 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 5.10 Total: 16.15 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -4.63 Total: -112.62 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.58 Total: -29.57 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -1.30 Total: 5.57 kcal Total: -67.24 0.03 -67.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035305107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.941 kcal (2) G-P(sol) polarization free energy of solvation -67.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds