Wall clock time and date at job start Tue Mar 31 2020 03:54:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31615 * 1
3 3 Si 1.86802 * 120.00005 * 2 1
4 4 H 1.48508 * 109.46994 * 270.00424 * 3 2 1
5 5 H 1.48500 * 109.47141 * 30.00570 * 3 2 1
6 6 H 1.48501 * 109.46918 * 150.00520 * 3 2 1
7 7 C 1.38810 * 120.00224 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00368 * 196.90314 * 7 2 1
9 9 N 1.36944 * 120.00164 * 16.89639 * 7 2 1
10 10 C 1.47153 * 120.97945 * 26.26688 * 9 7 2
11 11 C 1.53293 * 108.38442 * 129.44335 * 10 9 7
12 12 O 1.42958 * 109.26352 * 52.28030 * 11 10 9
13 13 C 1.42955 * 114.16766 * 297.49886 * 12 11 10
14 14 H 1.08997 * 109.51829 * 302.55211 * 13 12 11
15 15 C 1.53002 * 109.51392 * 182.44724 * 13 12 11
16 16 N 1.46505 * 109.46739 * 65.10296 * 15 13 12
17 17 C 1.34778 * 120.00018 * 180.02562 * 16 15 13
18 18 O 1.21604 * 119.99427 * 0.02562 * 17 16 15
19 19 C 1.47447 * 119.99920 * 180.02562 * 17 16 15
20 20 C 1.37982 * 124.15323 * 180.02562 * 19 17 16
21 21 S 1.72100 * 104.03431 * 180.02562 * 20 19 17
22 22 N 1.56407 * 96.15436 * 359.97438 * 21 20 19
23 23 N 1.27422 * 109.87496 * 359.97438 * 22 21 20
24 24 C 1.47145 * 120.98592 * 206.24556 * 9 7 2
25 25 H 0.96996 * 120.00184 * 359.97438 * 1 2 3
26 26 H 1.08997 * 109.68248 * 249.17130 * 10 9 7
27 27 H 1.09001 * 109.68078 * 9.68147 * 10 9 7
28 28 H 1.09006 * 109.51112 * 172.22864 * 11 10 9
29 29 H 1.09003 * 109.51288 * 292.37781 * 11 10 9
30 30 H 1.08993 * 109.47000 * 305.10443 * 15 13 12
31 31 H 1.08995 * 109.47444 * 185.09903 * 15 13 12
32 32 H 0.97001 * 119.99854 * 359.97438 * 16 15 13
33 33 H 1.08006 * 127.98388 * 0.04017 * 20 19 17
34 34 H 1.09006 * 109.68200 * 110.83004 * 24 9 7
35 35 H 1.09000 * 109.71456 * 350.29911 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4976 2.0465 -1.4002
5 1 1.4477 2.6527 0.7002
6 1 3.5478 1.4401 0.6999
7 6 2.0102 -1.2021 -0.0005
8 1 3.0553 -1.2225 0.2714
9 7 1.3699 -2.3624 -0.3457
10 6 0.1977 -2.3448 -1.2350
11 6 0.4253 -3.3661 -2.3553
12 8 0.7666 -4.6294 -1.7797
13 6 1.9820 -4.6205 -1.0271
14 1 2.8018 -4.2869 -1.6633
15 6 2.2753 -6.0315 -0.5134
16 7 2.5321 -6.9210 -1.6488
17 6 2.8147 -8.2215 -1.4357
18 8 2.8561 -8.6565 -0.3009
19 6 3.0736 -9.1165 -2.5784
20 6 3.3699 -10.4589 -2.4594
21 16 3.5714 -10.9875 -4.0847
22 7 3.2917 -9.5992 -4.7485
23 7 3.0495 -8.7299 -3.8489
24 6 1.8341 -3.6634 0.1612
25 1 -0.4850 0.8400 0.0004
26 1 -0.6955 -2.6122 -0.6704
27 1 0.0768 -1.3499 -1.6635
28 1 -0.4857 -3.4688 -2.9450
29 1 1.2389 -3.0274 -2.9969
30 1 1.4172 -6.3990 0.0493
31 1 3.1514 -6.0075 0.1346
32 1 2.4979 -6.5741 -2.5540
33 1 3.4554 -11.0431 -1.5550
34 1 1.1056 -4.0637 0.8665
35 1 2.7971 -3.5425 0.6572
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001035460444.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:54:41
Heat of formation + Delta-G solvation = 19.921562 kcal
Electronic energy + Delta-G solvation = -21430.693702 eV
Core-core repulsion = 17978.587597 eV
Total energy + Delta-G solvation = -3452.106105 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.34490 -39.45144 -38.40708 -35.04026 -34.32473 -32.53447 -31.55246 -30.68332
-27.90883 -27.21285 -25.73626 -23.62893 -23.10774 -21.73646 -21.07280 -19.97021
-19.13623 -17.24698 -16.80087 -16.39753 -16.11264 -15.95733 -15.59609 -15.00174
-14.72696 -14.37506 -14.27065 -13.78490 -13.27472 -13.10637 -12.92902 -12.76049
-12.44992 -12.41996 -11.59281 -11.13893 -10.88703 -10.76198 -10.69293 -10.45233
-10.41447 -10.35639 -10.26500 -10.26191 -9.99540 -9.67945 -9.12182 -9.07590
-8.56224 -6.78078 -5.86133 -3.30137 -0.28206 0.56857 1.17782 1.19014
2.95801 3.00224 3.33723 3.40622 3.41926 3.56500 4.20982 4.37300
4.41415 4.64811 5.01034 5.10200 5.31246 5.44934 5.48856 5.76740
5.78809 5.98514 6.14124 6.23553 6.35745 6.39211 6.46969 6.72427
7.08241 7.09517 7.44282 7.50474 7.69054 7.84047 7.98123 8.31336
9.09293 9.71930 10.28563 11.21977
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.036032 B = 0.002818 C = 0.002769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 776.892042 B = 9933.255111 C =10111.287287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.003 3.997
3 Si 0.906 3.094
4 H -0.287 1.287
5 H -0.290 1.290
6 H -0.278 1.278
7 C -0.256 4.256
8 H 0.069 0.931
9 N -0.594 5.594
10 C 0.139 3.861
11 C 0.040 3.960
12 O -0.389 6.389
13 C 0.064 3.936
14 H 0.061 0.939
15 C 0.129 3.871
16 N -0.697 5.697
17 C 0.600 3.400
18 O -0.530 6.530
19 C -0.018 4.018
20 C -0.236 4.236
21 S 0.455 5.545
22 N -0.288 5.288
23 N -0.208 5.208
24 C 0.122 3.878
25 H 0.255 0.745
26 H 0.029 0.971
27 H 0.095 0.905
28 H 0.082 0.918
29 H 0.042 0.958
30 H 0.081 0.919
31 H 0.086 0.914
32 H 0.414 0.586
33 H 0.209 0.791
34 H 0.031 0.969
35 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.407 -21.075 -7.496 23.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.196 4.196
3 Si 0.736 3.264
4 H -0.214 1.214
5 H -0.217 1.217
6 H -0.204 1.204
7 C -0.385 4.385
8 H 0.087 0.913
9 N -0.318 5.318
10 C 0.014 3.986
11 C -0.038 4.038
12 O -0.309 6.309
13 C 0.004 3.996
14 H 0.078 0.922
15 C 0.005 3.995
16 N -0.347 5.347
17 C 0.381 3.619
18 O -0.406 6.406
19 C -0.166 4.166
20 C -0.393 4.393
21 S 0.590 5.410
22 N -0.269 5.269
23 N -0.078 5.078
24 C -0.005 4.005
25 H 0.065 0.935
26 H 0.047 0.953
27 H 0.113 0.887
28 H 0.100 0.900
29 H 0.060 0.940
30 H 0.099 0.901
31 H 0.104 0.896
32 H 0.250 0.750
33 H 0.226 0.774
34 H 0.049 0.951
35 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 6.329 -21.457 -8.573 23.957
hybrid contribution 0.271 1.712 1.120 2.064
sum 6.599 -19.745 -7.452 22.113
Atomic orbital electron populations
1.70030 1.05282 1.25705 1.53641 1.25051 0.95356 0.98507 1.00709
0.86232 0.79075 0.83369 0.77741 1.21355 1.21666 1.20357 1.19211
0.92659 0.84459 1.42206 0.91283 1.44070 1.33598 1.00984 1.53128
1.21453 0.89105 0.98350 0.89736 1.23335 0.99122 0.84764 0.96587
1.87791 1.41146 1.32659 1.69267 1.22816 0.87798 0.93545 0.95476
0.92151 1.21561 1.02034 0.87919 0.87952 1.45834 1.68745 1.08132
1.11981 1.16632 0.77760 0.81662 0.85864 1.90842 1.52588 1.75623
1.21565 1.22754 1.07158 0.93974 0.92683 1.28888 1.04734 0.98230
1.07487 1.81531 1.48659 1.19315 0.91461 1.78692 1.21305 1.01166
1.25701 1.71554 1.12913 1.25736 0.97642 1.21434 0.99013 0.87209
0.92835 0.93466 0.95338 0.88738 0.89978 0.94012 0.90107 0.89580
0.75015 0.77390 0.95147 0.91690
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.86 11.14 55.49 0.62 -25.24 16
2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16
3 Si 0.91 21.36 29.59 -169.99 -5.03 16.33 16
4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16
6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
7 C -0.26 -6.91 9.65 -15.06 -0.15 -7.06 16
8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16
9 N -0.59 -14.76 3.05 -171.83 -0.52 -15.29 16
10 C 0.14 3.30 5.45 -3.53 -0.02 3.28 16
11 C 0.04 0.77 6.98 37.31 0.26 1.03 16
12 O -0.39 -7.35 10.33 -35.23 -0.36 -7.71 16
13 C 0.06 1.10 2.81 -26.58 -0.07 1.03 16
14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
15 C 0.13 1.90 5.34 -4.04 -0.02 1.88 16
16 N -0.70 -9.66 5.50 -61.38 -0.34 -9.99 16
17 C 0.60 8.32 7.81 -12.51 -0.10 8.23 16
18 O -0.53 -8.48 16.80 5.27 0.09 -8.39 16
19 C -0.02 -0.21 6.87 -83.78 -0.58 -0.79 16
20 C -0.24 -1.91 11.21 30.64 0.34 -1.57 16
21 S 0.45 2.91 23.38 -107.50 -2.51 0.40 16
22 N -0.29 -3.10 12.49 60.35 0.75 -2.34 16
23 N -0.21 -2.56 11.24 32.74 0.37 -2.19 16
24 C 0.12 2.51 6.02 -3.54 -0.02 2.49 16
25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16
28 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16
29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16
32 H 0.41 5.55 8.06 -40.82 -0.33 5.22 16
33 H 0.21 1.21 8.06 -52.48 -0.42 0.78 16
34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16
LS Contribution 315.33 15.07 4.75 4.75
Total: -1.00 -32.23 315.33 -6.62 -38.84
By element:
Atomic # 1 Polarization: 6.33 SS G_CDS: -3.99 Total: 2.33 kcal
Atomic # 6 Polarization: 8.94 SS G_CDS: -0.44 Total: 8.50 kcal
Atomic # 7 Polarization: -55.93 SS G_CDS: 0.88 Total: -55.06 kcal
Atomic # 8 Polarization: -15.83 SS G_CDS: -0.28 Total: -16.11 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal
Atomic # 16 Polarization: 2.91 SS G_CDS: -2.51 Total: 0.40 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -32.23 -6.62 -38.84 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035460444.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.764 kcal
(2) G-P(sol) polarization free energy of solvation -32.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds