Wall clock time and date at job start Tue Mar 31 2020 03:54:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31615 * 1
3 3 Si 1.86802 * 120.00005 * 2 1
4 4 H 1.48508 * 109.46994 * 270.00424 * 3 2 1
5 5 H 1.48500 * 109.47141 * 30.00570 * 3 2 1
6 6 H 1.48501 * 109.46918 * 150.00520 * 3 2 1
7 7 C 1.38810 * 120.00224 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00368 * 196.90314 * 7 2 1
9 9 N 1.36944 * 120.00164 * 16.89639 * 7 2 1
10 10 C 1.47153 * 120.97945 * 26.26688 * 9 7 2
11 11 C 1.53293 * 108.38442 * 129.44335 * 10 9 7
12 12 O 1.42958 * 109.26352 * 52.28030 * 11 10 9
13 13 C 1.42955 * 114.16766 * 297.49886 * 12 11 10
14 14 H 1.08997 * 109.51829 * 302.55211 * 13 12 11
15 15 C 1.53002 * 109.51392 * 182.44724 * 13 12 11
16 16 N 1.46505 * 109.46739 * 65.10296 * 15 13 12
17 17 C 1.34778 * 120.00018 * 180.02562 * 16 15 13
18 18 O 1.21604 * 119.99427 * 0.02562 * 17 16 15
19 19 C 1.47447 * 119.99920 * 180.02562 * 17 16 15
20 20 C 1.37982 * 124.15323 * 180.02562 * 19 17 16
21 21 S 1.72100 * 104.03431 * 180.02562 * 20 19 17
22 22 N 1.56407 * 96.15436 * 359.97438 * 21 20 19
23 23 N 1.27422 * 109.87496 * 359.97438 * 22 21 20
24 24 C 1.47145 * 120.98592 * 206.24556 * 9 7 2
25 25 H 0.96996 * 120.00184 * 359.97438 * 1 2 3
26 26 H 1.08997 * 109.68248 * 249.17130 * 10 9 7
27 27 H 1.09001 * 109.68078 * 9.68147 * 10 9 7
28 28 H 1.09006 * 109.51112 * 172.22864 * 11 10 9
29 29 H 1.09003 * 109.51288 * 292.37781 * 11 10 9
30 30 H 1.08993 * 109.47000 * 305.10443 * 15 13 12
31 31 H 1.08995 * 109.47444 * 185.09903 * 15 13 12
32 32 H 0.97001 * 119.99854 * 359.97438 * 16 15 13
33 33 H 1.08006 * 127.98388 * 0.04017 * 20 19 17
34 34 H 1.09006 * 109.68200 * 110.83004 * 24 9 7
35 35 H 1.09000 * 109.71456 * 350.29911 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4976 2.0465 -1.4002
5 1 1.4477 2.6527 0.7002
6 1 3.5478 1.4401 0.6999
7 6 2.0102 -1.2021 -0.0005
8 1 3.0553 -1.2225 0.2714
9 7 1.3699 -2.3624 -0.3457
10 6 0.1977 -2.3448 -1.2350
11 6 0.4253 -3.3661 -2.3553
12 8 0.7666 -4.6294 -1.7797
13 6 1.9820 -4.6205 -1.0271
14 1 2.8018 -4.2869 -1.6633
15 6 2.2753 -6.0315 -0.5134
16 7 2.5321 -6.9210 -1.6488
17 6 2.8147 -8.2215 -1.4357
18 8 2.8561 -8.6565 -0.3009
19 6 3.0736 -9.1165 -2.5784
20 6 3.3699 -10.4589 -2.4594
21 16 3.5714 -10.9875 -4.0847
22 7 3.2917 -9.5992 -4.7485
23 7 3.0495 -8.7299 -3.8489
24 6 1.8341 -3.6634 0.1612
25 1 -0.4850 0.8400 0.0004
26 1 -0.6955 -2.6122 -0.6704
27 1 0.0768 -1.3499 -1.6635
28 1 -0.4857 -3.4688 -2.9450
29 1 1.2389 -3.0274 -2.9969
30 1 1.4172 -6.3990 0.0493
31 1 3.1514 -6.0075 0.1346
32 1 2.4979 -6.5741 -2.5540
33 1 3.4554 -11.0431 -1.5550
34 1 1.1056 -4.0637 0.8665
35 1 2.7971 -3.5425 0.6572
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035460444.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:54:41
Heat of formation + Delta-G solvation = -5.042305 kcal
Electronic energy + Delta-G solvation = -21431.776217 eV
Core-core repulsion = 17978.587597 eV
Total energy + Delta-G solvation = -3453.188619 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.14461 -40.62268 -39.86367 -36.56103 -35.87011 -33.50302 -33.19760 -32.27680
-29.38218 -28.26892 -27.20347 -25.12203 -24.56713 -23.13122 -21.96705 -21.47921
-20.21504 -18.89954 -17.98500 -17.54872 -17.17052 -17.04847 -16.92298 -16.41512
-16.15610 -15.75640 -15.53916 -15.40649 -15.02205 -14.62902 -14.47134 -13.75224
-13.66153 -13.24720 -13.05935 -12.99550 -12.70220 -12.53792 -12.17291 -12.08525
-11.88835 -11.59672 -11.32664 -11.25725 -11.16795 -10.89816 -10.80928 -10.55739
-10.23960 -8.76778 -7.91774 -5.39356 -0.92977 -0.03838 0.31024 0.54628
1.46992 1.48155 1.57188 1.95870 2.01100 2.47467 2.71640 2.78701
3.23276 3.47461 3.63896 3.82852 3.94637 4.06210 4.23803 4.37045
4.46170 4.51081 4.59371 4.71311 4.74518 4.88267 5.04481 5.20977
5.23510 5.54616 5.60511 6.19376 6.24276 6.32124 6.53376 6.93087
7.05330 7.73451 8.27047 9.14404
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.036032 B = 0.002818 C = 0.002769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 776.892042 B = 9933.255111 C =10111.287287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.050 4.050
3 Si 0.972 3.028
4 H -0.283 1.283
5 H -0.296 1.296
6 H -0.267 1.267
7 C -0.266 4.266
8 H 0.074 0.926
9 N -0.614 5.614
10 C 0.144 3.856
11 C 0.053 3.947
12 O -0.391 6.391
13 C 0.076 3.924
14 H 0.067 0.933
15 C 0.139 3.861
16 N -0.697 5.697
17 C 0.603 3.397
18 O -0.557 6.557
19 C -0.045 4.045
20 C -0.234 4.234
21 S 0.566 5.434
22 N -0.333 5.333
23 N -0.236 5.236
24 C 0.118 3.882
25 H 0.252 0.748
26 H 0.000 1.000
27 H 0.067 0.933
28 H 0.107 0.893
29 H 0.049 0.951
30 H 0.073 0.927
31 H 0.100 0.900
32 H 0.416 0.584
33 H 0.231 0.769
34 H 0.022 0.978
35 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.937 -23.106 -8.430 25.845
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.246 4.246
3 Si 0.800 3.200
4 H -0.210 1.210
5 H -0.222 1.222
6 H -0.192 1.192
7 C -0.396 4.396
8 H 0.092 0.908
9 N -0.338 5.338
10 C 0.018 3.982
11 C -0.024 4.024
12 O -0.310 6.310
13 C 0.016 3.984
14 H 0.085 0.915
15 C 0.016 3.984
16 N -0.347 5.347
17 C 0.385 3.615
18 O -0.435 6.435
19 C -0.193 4.193
20 C -0.391 4.391
21 S 0.702 5.298
22 N -0.314 5.314
23 N -0.105 5.105
24 C -0.008 4.008
25 H 0.061 0.939
26 H 0.018 0.982
27 H 0.086 0.914
28 H 0.125 0.875
29 H 0.067 0.933
30 H 0.091 0.909
31 H 0.118 0.882
32 H 0.253 0.747
33 H 0.248 0.752
34 H 0.040 0.960
35 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 7.877 -23.512 -9.527 26.564
hybrid contribution -0.171 2.139 1.409 2.567
sum 7.706 -21.373 -8.118 24.127
Atomic orbital electron populations
1.70187 1.06746 1.26082 1.55161 1.25836 0.96106 1.01658 1.00995
0.85198 0.78041 0.79128 0.77650 1.20998 1.22237 1.19182 1.19568
0.93063 0.85531 1.41438 0.90842 1.44352 1.33663 1.01992 1.53817
1.21298 0.88024 0.98284 0.90553 1.23164 1.00650 0.83660 0.94960
1.87805 1.41894 1.32056 1.69276 1.22691 0.87404 0.94335 0.93940
0.91489 1.21363 1.02326 0.86515 0.88241 1.45761 1.68884 1.08333
1.11685 1.16859 0.76807 0.81560 0.86265 1.90818 1.53843 1.76055
1.22765 1.22490 1.09754 0.94916 0.92152 1.29295 1.02693 0.97289
1.09836 1.81132 1.44816 1.15301 0.88597 1.78317 1.22866 1.03432
1.26794 1.71588 1.14091 1.27044 0.97822 1.21594 0.99046 0.86081
0.94115 0.93929 0.98160 0.91428 0.87458 0.93264 0.90896 0.88220
0.74702 0.75219 0.96022 0.90611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.07 11.14 21.65 0.24 -54.82 16
2 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16
3 Si 0.97 44.26 29.59 68.60 2.03 46.29 16
4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16
6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
7 C -0.27 -14.47 9.65 84.03 0.81 -13.66 16
8 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16
9 N -0.61 -30.86 3.05 -697.55 -2.13 -32.98 16
10 C 0.14 7.00 5.45 86.35 0.47 7.47 16
11 C 0.05 2.03 6.98 72.08 0.50 2.53 16
12 O -0.39 -14.41 10.33 -148.98 -1.54 -15.95 16
13 C 0.08 2.57 2.81 30.69 0.09 2.65 16
14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
15 C 0.14 3.99 5.34 86.38 0.46 4.45 16
16 N -0.70 -18.70 5.50 -466.35 -2.57 -21.26 16
17 C 0.60 16.18 7.81 86.67 0.68 16.85 16
18 O -0.56 -17.32 16.80 -4.04 -0.07 -17.38 16
19 C -0.05 -0.99 6.87 41.36 0.28 -0.71 16
20 C -0.23 -3.18 11.21 67.76 0.76 -2.42 16
21 S 0.57 5.44 23.38 -56.49 -1.32 4.12 16
22 N -0.33 -6.56 12.49 37.02 0.46 -6.09 16
23 N -0.24 -5.55 11.24 -50.35 -0.57 -6.12 16
24 C 0.12 4.82 6.02 86.35 0.52 5.34 16
25 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16
26 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16
27 H 0.07 3.63 6.14 -2.39 -0.01 3.62 16
28 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16
29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16
32 H 0.42 10.83 8.06 -92.71 -0.75 10.08 16
33 H 0.23 1.93 8.06 -2.91 -0.02 1.90 16
34 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16
35 H 0.08 2.89 7.96 -2.39 -0.02 2.87 16
Total: -1.00 -70.65 315.33 -0.07 -70.73
By element:
Atomic # 1 Polarization: 12.93 SS G_CDS: 0.39 Total: 13.32 kcal
Atomic # 6 Polarization: 15.16 SS G_CDS: 4.99 Total: 20.16 kcal
Atomic # 7 Polarization: -116.72 SS G_CDS: -4.55 Total: -121.28 kcal
Atomic # 8 Polarization: -31.73 SS G_CDS: -1.61 Total: -33.34 kcal
Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal
Atomic # 16 Polarization: 5.44 SS G_CDS: -1.32 Total: 4.12 kcal
Total: -70.65 -0.07 -70.73 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035460444.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.685 kcal
(2) G-P(sol) polarization free energy of solvation -70.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds