Wall clock time and date at job start Tue Mar 31 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48497 * 109.46927 * 269.72894 * 3 2 1 5 5 H 1.48506 * 109.46836 * 29.72533 * 3 2 1 6 6 H 1.48490 * 109.47352 * 149.72429 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.72630 * 2 1 3 8 8 H 1.08005 * 119.99682 * 163.08295 * 7 2 1 9 9 N 1.36931 * 119.99878 * 343.08256 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.77989 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51588 * 57.34666 * 13 12 11 15 15 C 1.53003 * 109.51430 * 177.44738 * 13 12 11 16 16 N 1.46503 * 109.46847 * 299.99881 * 15 13 12 17 17 C 1.34771 * 120.00194 * 180.02562 * 16 15 13 18 18 O 1.21612 * 119.99990 * 0.02562 * 17 16 15 19 19 C 1.47448 * 120.00357 * 179.97438 * 17 16 15 20 20 C 1.37975 * 124.15539 * 179.97438 * 19 17 16 21 21 S 1.72100 * 104.03483 * 179.97438 * 20 19 17 22 22 N 1.56409 * 96.15294 * 359.97438 * 21 20 19 23 23 N 1.27415 * 109.87590 * 359.75072 * 22 21 20 24 24 C 1.47154 * 120.97887 * 153.49544 * 9 7 2 25 25 H 0.96999 * 120.00005 * 0.27659 * 1 2 3 26 26 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 27 27 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 28 28 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 29 29 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 30 30 H 1.08999 * 109.47032 * 59.99457 * 15 13 12 31 31 H 1.08997 * 109.47638 * 180.02562 * 15 13 12 32 32 H 0.97001 * 120.00115 * 359.97438 * 16 15 13 33 33 H 1.08001 * 127.98406 * 359.95933 * 20 19 17 34 34 H 1.08999 * 109.68106 * 249.21167 * 24 9 7 35 35 H 1.09001 * 109.68075 * 9.76662 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5034 2.0431 -1.4000 5 1 1.4447 2.6544 0.6943 6 1 3.5448 1.4420 0.7058 7 6 2.0103 -1.2021 0.0057 8 1 3.0553 -1.2236 -0.2663 9 7 1.3701 -2.3607 0.3564 10 6 0.1975 -2.3390 1.2451 11 6 0.4244 -3.3557 2.3698 12 8 0.7649 -4.6213 1.7987 13 6 1.9813 -4.6161 1.0475 14 1 2.8003 -4.2796 1.6831 15 6 2.2751 -6.0296 0.5409 16 7 2.4100 -6.9389 1.6816 17 6 2.6723 -8.2447 1.4752 18 8 2.7975 -8.6680 0.3421 19 6 2.8087 -9.1598 2.6233 20 6 3.0754 -10.5089 2.5112 21 16 3.1244 -11.0614 4.1403 22 7 2.8310 -9.6726 4.7973 23 7 2.6964 -8.7854 3.8928 24 6 1.8307 -3.6635 -0.1495 25 1 -0.4850 0.8400 -0.0041 26 1 0.0770 -1.3425 1.6698 27 1 -0.6956 -2.6081 0.6811 28 1 1.2378 -3.0145 3.0102 29 1 -0.4866 -3.4550 2.9600 30 1 1.4565 -6.3648 -0.0960 31 1 3.2028 -6.0251 -0.0313 32 1 2.3113 -6.6011 2.5855 33 1 3.2199 -11.0851 1.6093 34 1 1.0993 -4.0642 -0.8513 35 1 2.7923 -3.5444 -0.6486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035460445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:42 Heat of formation + Delta-G solvation = -4.776875 kcal Electronic energy + Delta-G solvation = -21443.096503 eV Core-core repulsion = 17989.919394 eV Total energy + Delta-G solvation = -3453.177109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14225 -40.61446 -39.85052 -36.56164 -35.85098 -33.49429 -33.19496 -32.26278 -29.38218 -28.26387 -27.19901 -25.11951 -24.55851 -23.11886 -21.95122 -21.48235 -20.21967 -18.89765 -17.98874 -17.53328 -17.17296 -17.03059 -16.91759 -16.41014 -16.16392 -15.74980 -15.53936 -15.40410 -15.02048 -14.63934 -14.45954 -13.74882 -13.65967 -13.23772 -13.05954 -12.99237 -12.68796 -12.50905 -12.20114 -12.09282 -11.88886 -11.59784 -11.32087 -11.25118 -11.16625 -10.89587 -10.81068 -10.54871 -10.22946 -8.76104 -7.91785 -5.39103 -0.92811 -0.03669 0.31277 0.54814 1.46510 1.48133 1.57950 1.96054 2.01383 2.47782 2.71108 2.80149 3.23674 3.48027 3.64201 3.83353 3.94928 4.05918 4.23367 4.37203 4.46338 4.50755 4.60615 4.71949 4.75407 4.88646 5.04753 5.20689 5.24103 5.54799 5.60601 6.20068 6.24255 6.32317 6.53873 6.93634 7.05476 7.73694 8.27410 9.14369 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.037264 B = 0.002823 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.208863 B = 9915.397565 C =10146.970820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.144 3.856 11 C 0.054 3.946 12 O -0.391 6.391 13 C 0.076 3.924 14 H 0.067 0.933 15 C 0.139 3.861 16 N -0.696 5.696 17 C 0.602 3.398 18 O -0.557 6.557 19 C -0.045 4.045 20 C -0.234 4.234 21 S 0.566 5.434 22 N -0.333 5.333 23 N -0.236 5.236 24 C 0.118 3.882 25 H 0.252 0.748 26 H 0.067 0.933 27 H 0.000 1.000 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.417 0.583 33 H 0.231 0.769 34 H 0.022 0.978 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 -23.180 8.610 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.019 3.981 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.016 3.984 14 H 0.085 0.915 15 C 0.015 3.985 16 N -0.346 5.346 17 C 0.385 3.615 18 O -0.435 6.435 19 C -0.193 4.193 20 C -0.391 4.391 21 S 0.701 5.299 22 N -0.314 5.314 23 N -0.105 5.105 24 C -0.008 4.008 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.253 0.747 33 H 0.248 0.752 34 H 0.040 0.960 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.021 -23.598 9.731 26.474 hybrid contribution -0.055 2.160 -1.465 2.611 sum 6.965 -21.438 8.265 24.009 Atomic orbital electron populations 1.70190 1.06762 1.26089 1.55143 1.25845 0.96098 1.01685 1.00986 0.85218 0.78066 0.79173 0.77618 1.21132 1.21818 1.19313 1.19552 0.93064 0.85642 1.41401 0.90862 1.44367 1.33737 1.01973 1.53730 1.21294 0.87984 0.98322 0.90538 1.23159 1.00664 0.83591 0.94980 1.87796 1.41810 1.31955 1.69445 1.22784 0.87367 0.94309 0.93918 0.91463 1.21387 1.02876 0.86053 0.88150 1.45737 1.69735 1.07455 1.11656 1.16864 0.76766 0.81629 0.86271 1.90819 1.52751 1.76981 1.22976 1.22493 1.09840 0.94807 0.92172 1.29290 1.02882 0.97143 1.09790 1.81130 1.44999 1.15146 0.88607 1.78316 1.23412 1.02935 1.26738 1.71591 1.14384 1.26869 0.97690 1.21684 0.99023 0.86090 0.94050 0.93927 0.91440 0.98210 0.93235 0.87458 0.90953 0.88204 0.74665 0.75220 0.96043 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.06 11.14 21.65 0.24 -54.82 16 2 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 3 Si 0.97 44.22 29.59 68.60 2.03 46.25 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.27 -14.50 9.65 84.03 0.81 -13.69 16 8 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 9 N -0.61 -30.85 3.04 -696.73 -2.12 -32.97 16 10 C 0.14 7.01 5.44 86.35 0.47 7.48 16 11 C 0.05 2.04 6.99 72.08 0.50 2.54 16 12 O -0.39 -14.36 10.13 -148.98 -1.51 -15.87 16 13 C 0.08 2.56 2.88 30.84 0.09 2.65 16 14 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.99 5.37 86.38 0.46 4.45 16 16 N -0.70 -18.79 5.45 -466.34 -2.54 -21.33 16 17 C 0.60 16.24 7.81 86.67 0.68 16.91 16 18 O -0.56 -17.36 16.80 -4.07 -0.07 -17.43 16 19 C -0.05 -1.00 6.87 41.36 0.28 -0.71 16 20 C -0.23 -3.20 11.21 67.76 0.76 -2.44 16 21 S 0.57 5.49 23.38 -56.49 -1.32 4.17 16 22 N -0.33 -6.59 12.49 37.02 0.46 -6.13 16 23 N -0.24 -5.58 11.24 -50.35 -0.57 -6.15 16 24 C 0.12 4.82 6.05 86.50 0.52 5.35 16 25 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.07 3.62 6.14 -2.39 -0.01 3.61 16 27 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.11 3.52 8.14 -2.39 -0.02 3.51 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.42 10.97 7.93 -92.71 -0.74 10.24 16 33 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 2.89 7.96 -2.39 -0.02 2.87 16 Total: -1.00 -70.65 315.06 0.01 -70.64 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.40 Total: 13.48 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.00 Total: 20.15 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -4.52 Total: -121.39 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.58 Total: -33.30 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.32 Total: 4.17 kcal Total: -70.65 0.01 -70.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035460445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.861 kcal (2) G-P(sol) polarization free energy of solvation -70.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds