Wall clock time and date at job start Tue Mar 31 2020 03:57:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.31244 * 124.05375 * 2 1
4 4 N 1.27333 * 120.03743 * 180.02562 * 3 2 1
5 5 S 1.56641 * 109.74304 * 359.69772 * 4 3 2
6 6 C 1.38241 * 124.06032 * 180.02562 * 2 1 3
7 7 C 1.47174 * 128.47129 * 359.97438 * 6 2 1
8 8 O 1.21619 * 120.00330 * 359.97438 * 7 6 2
9 9 N 1.34782 * 119.99960 * 180.02562 * 7 6 2
10 10 C 1.46499 * 119.99795 * 180.02562 * 9 7 6
11 11 H 1.09000 * 110.64741 * 31.84944 * 10 9 7
12 12 C 1.54337 * 111.00057 * 268.77275 * 10 9 7
13 13 N 1.47017 * 107.26706 * 219.60429 * 12 10 9
14 14 C 1.36939 * 125.64726 * 178.85094 * 13 12 10
15 15 H 1.08007 * 119.99950 * 342.93837 * 14 13 12
16 16 C 1.38808 * 120.00034 * 162.94507 * 14 13 12
17 17 N 1.31621 * 119.99791 * 332.14307 * 16 14 13
18 18 Si 1.86798 * 120.00108 * 151.87355 * 16 14 13
19 19 H 1.48503 * 109.47019 * 180.27696 * 18 16 14
20 20 H 1.48504 * 109.46933 * 300.26901 * 18 16 14
21 21 H 1.48491 * 109.47385 * 60.27327 * 18 16 14
22 22 C 1.47418 * 108.70401 * 358.58442 * 13 12 10
23 23 C 1.54916 * 104.83113 * 24.35737 * 22 13 12
24 24 H 1.08998 * 111.00226 * 81.06601 * 23 22 13
25 25 O 1.42900 * 111.00282 * 204.87893 * 23 22 13
26 26 H 1.09000 * 109.46869 * 269.97406 * 1 2 3
27 27 H 1.08997 * 109.46919 * 29.97466 * 1 2 3
28 28 H 1.08996 * 109.46799 * 149.97576 * 1 2 3
29 29 H 0.97001 * 120.00066 * 359.97438 * 9 7 6
30 30 H 1.09002 * 109.99092 * 100.12464 * 12 10 9
31 31 H 1.09008 * 109.77657 * 338.96437 * 12 10 9
32 32 H 0.96997 * 120.00038 * 353.69163 * 17 16 14
33 33 H 1.09001 * 110.36701 * 143.19505 * 22 13 12
34 34 H 1.09000 * 110.37153 * 265.51974 * 22 13 12
35 35 H 0.96709 * 113.99516 * 298.54258 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2419 1.0874 0.0000
4 7 3.5121 0.9982 -0.0005
5 16 3.9367 -0.5096 0.0068
6 6 2.2812 -1.1453 -0.0005
7 6 1.8395 -2.5491 -0.0006
8 8 0.6523 -2.8131 0.0002
9 7 2.7506 -3.5423 -0.0006
10 6 2.3108 -4.9397 -0.0013
11 1 1.3692 -5.0461 -0.5400
12 6 2.1736 -5.4771 1.4390
13 7 2.6774 -6.8583 1.4392
14 6 2.7493 -7.6814 2.5313
15 1 2.6873 -7.2653 3.5261
16 6 2.9021 -9.0503 2.3598
17 7 2.4481 -9.6317 1.2697
18 14 3.7587 -10.0662 3.6726
19 1 3.7989 -11.4892 3.2495
20 1 5.1445 -9.5662 3.8596
21 1 3.0140 -9.9510 4.9521
22 6 3.0863 -7.2126 0.0679
23 6 3.4008 -5.8579 -0.6146
24 1 4.3992 -5.5097 -0.3501
25 8 3.2532 -5.9525 -2.0328
26 1 -0.3633 -0.0005 1.0277
27 1 -0.3633 0.8902 -0.5134
28 1 -0.3633 -0.8897 -0.5142
29 1 3.6975 -3.3319 -0.0009
30 1 1.1271 -5.4642 1.7435
31 1 2.7672 -4.8658 2.1188
32 1 1.9272 -9.1223 0.6294
33 1 3.9756 -7.8427 0.0881
34 1 2.2731 -7.7194 -0.4516
35 1 3.8498 -6.5900 -2.4486
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001076729211.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:57:16
Heat of formation + Delta-G solvation = 16.813505 kcal
Electronic energy + Delta-G solvation = -21739.717975 eV
Core-core repulsion = 18287.477095 eV
Total energy + Delta-G solvation = -3452.240880 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.22468 -39.87365 -38.13871 -35.40716 -34.48312 -33.51999 -31.98604 -29.28953
-28.17451 -27.30460 -27.02004 -24.43254 -22.82719 -21.00198 -20.56432 -20.30392
-18.76321 -17.92512 -17.43894 -17.14689 -16.34494 -15.93031 -15.08466 -14.85770
-14.37507 -14.24413 -14.03545 -13.64711 -13.38723 -13.30592 -13.22149 -12.73053
-12.67381 -12.33463 -11.83119 -11.77507 -11.69278 -10.83464 -10.67911 -10.61030
-10.28726 -10.28175 -10.11438 -10.09297 -9.98403 -9.90022 -9.57629 -9.12764
-8.52947 -7.11148 -6.21144 -3.28782 -0.53900 0.53084 1.18344 1.67804
2.79768 2.81583 3.44541 3.47100 3.61359 3.65677 4.18210 4.29815
4.47516 4.53181 4.91378 5.04348 5.18003 5.28583 5.37145 5.40014
5.46354 5.48780 5.77249 5.80314 5.91752 6.12698 6.45779 6.56934
6.65220 6.77782 7.21793 7.38635 7.62312 7.79432 7.91647 8.35296
8.87127 9.67295 10.17670 11.10624
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.025300 B = 0.003540 C = 0.003501
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.461853 B = 7906.905172 C = 7996.757361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.101 3.899
3 N -0.251 5.251
4 N -0.254 5.254
5 S 0.415 5.585
6 C -0.287 4.287
7 C 0.603 3.397
8 O -0.510 6.510
9 N -0.704 5.704
10 C 0.143 3.857
11 H 0.109 0.891
12 C 0.128 3.872
13 N -0.597 5.597
14 C -0.341 4.341
15 H 0.069 0.931
16 C -0.022 4.022
17 N -0.914 5.914
18 Si 1.066 2.934
19 H -0.284 1.284
20 H -0.293 1.293
21 H -0.292 1.292
22 C 0.119 3.881
23 C 0.077 3.923
24 H 0.068 0.932
25 O -0.562 6.562
26 H 0.090 0.910
27 H 0.082 0.918
28 H 0.103 0.897
29 H 0.398 0.602
30 H 0.038 0.962
31 H 0.033 0.967
32 H 0.269 0.731
33 H 0.059 0.941
34 H 0.041 0.959
35 H 0.380 0.620
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.474 15.866 -5.091 17.021
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.046 4.046
3 N -0.117 5.117
4 N -0.235 5.235
5 S 0.551 5.449
6 C -0.428 4.428
7 C 0.386 3.614
8 O -0.386 6.386
9 N -0.355 5.355
10 C 0.038 3.962
11 H 0.127 0.873
12 C 0.002 3.998
13 N -0.326 5.326
14 C -0.468 4.468
15 H 0.086 0.914
16 C -0.225 4.225
17 N -0.554 5.554
18 Si 0.895 3.105
19 H -0.210 1.210
20 H -0.220 1.220
21 H -0.219 1.219
22 C -0.007 4.007
23 C 0.016 3.984
24 H 0.086 0.914
25 O -0.367 6.367
26 H 0.108 0.892
27 H 0.101 0.899
28 H 0.121 0.879
29 H 0.232 0.768
30 H 0.056 0.944
31 H 0.051 0.949
32 H 0.081 0.919
33 H 0.078 0.922
34 H 0.058 0.942
35 H 0.228 0.772
Dipole moment (debyes) X Y Z Total
from point charges 4.338 15.668 -4.514 16.872
hybrid contribution -0.902 0.702 -0.355 1.197
sum 3.436 16.370 -4.870 17.421
Atomic orbital electron populations
1.20553 0.83634 1.05067 1.04530 1.22978 1.00295 0.84966 0.96338
1.70623 0.96918 1.27980 1.16188 1.78870 1.09481 1.15630 1.19514
1.82568 1.09943 1.01510 1.50906 1.27804 0.98027 1.00088 1.16889
1.16403 0.86098 0.81810 0.77122 1.90831 1.15673 1.82845 1.49216
1.45815 1.09039 1.06256 1.74370 1.22104 0.98886 0.77431 0.97750
0.87300 1.21692 0.98080 0.87917 0.92150 1.44367 1.72904 1.10278
1.05020 1.19760 1.52062 0.89721 0.85305 0.91358 1.25816 1.00376
0.93701 1.02568 1.70801 1.33414 1.38034 1.13145 0.83514 0.76265
0.76168 0.74566 1.20992 1.22022 1.21877 1.22181 0.99257 0.92746
0.86533 1.23369 0.96938 0.97440 0.80641 0.91417 1.86449 1.65345
1.65415 1.19528 0.89177 0.89869 0.87896 0.76802 0.94409 0.94873
0.91939 0.92248 0.94169 0.77238
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.77 9.90 36.01 0.36 -0.41 16
2 C 0.10 1.21 7.00 -82.84 -0.58 0.63 16
3 N -0.25 -3.17 11.54 33.42 0.39 -2.79 16
4 N -0.25 -3.04 12.51 60.35 0.75 -2.29 16
5 S 0.41 3.93 23.05 -107.50 -2.48 1.45 16
6 C -0.29 -3.43 6.80 -35.95 -0.24 -3.68 16
7 C 0.60 8.56 7.80 -12.63 -0.10 8.46 16
8 O -0.51 -8.67 14.54 5.26 0.08 -8.60 16
9 N -0.70 -9.61 5.11 -53.18 -0.27 -9.88 16
10 C 0.14 2.43 3.04 -66.09 -0.20 2.23 16
11 H 0.11 2.05 7.55 -51.93 -0.39 1.66 16
12 C 0.13 2.62 7.01 -3.06 -0.02 2.59 16
13 N -0.60 -14.43 3.29 -170.06 -0.56 -14.99 16
14 C -0.34 -9.29 10.02 -15.06 -0.15 -9.44 16
15 H 0.07 1.86 7.97 -52.48 -0.42 1.44 16
16 C -0.02 -0.62 5.09 -17.43 -0.09 -0.71 16
17 N -0.91 -26.61 12.92 55.49 0.72 -25.90 16
18 Si 1.07 24.37 30.00 -169.99 -5.10 19.27 16
19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16
21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16
22 C 0.12 2.56 5.03 -2.53 -0.01 2.55 16
23 C 0.08 1.26 4.06 -24.58 -0.10 1.16 16
24 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16
25 O -0.56 -8.37 13.47 -35.23 -0.47 -8.84 16
26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16
27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
28 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16
29 H 0.40 4.32 7.99 -40.82 -0.33 3.99 16
30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.03 0.65 8.03 -51.92 -0.42 0.24 16
32 H 0.27 7.88 6.05 -40.82 -0.25 7.63 16
33 H 0.06 1.35 7.94 -51.93 -0.41 0.94 16
34 H 0.04 0.95 6.81 -51.93 -0.35 0.59 16
35 H 0.38 4.11 9.11 45.56 0.42 4.53 16
LS Contribution 313.86 15.07 4.73 4.73
Total: -1.00 -32.93 313.86 -6.33 -39.26
By element:
Atomic # 1 Polarization: 8.16 SS G_CDS: -2.97 Total: 5.20 kcal
Atomic # 6 Polarization: 4.51 SS G_CDS: -1.14 Total: 3.37 kcal
Atomic # 7 Polarization: -56.87 SS G_CDS: 1.03 Total: -55.84 kcal
Atomic # 8 Polarization: -17.04 SS G_CDS: -0.40 Total: -17.44 kcal
Atomic # 14 Polarization: 24.37 SS G_CDS: -5.10 Total: 19.27 kcal
Atomic # 16 Polarization: 3.93 SS G_CDS: -2.48 Total: 1.45 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.93 -6.33 -39.26 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076729211.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.075 kcal
(2) G-P(sol) polarization free energy of solvation -32.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.141 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.814 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds