Wall clock time and date at job start Tue Mar 31 2020 03:57:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.31244 * 124.05375 * 2 1
4 4 N 1.27333 * 120.03743 * 180.02562 * 3 2 1
5 5 S 1.56641 * 109.74304 * 359.69772 * 4 3 2
6 6 C 1.38241 * 124.06032 * 180.02562 * 2 1 3
7 7 C 1.47174 * 128.47129 * 359.97438 * 6 2 1
8 8 O 1.21619 * 120.00330 * 359.97438 * 7 6 2
9 9 N 1.34782 * 119.99960 * 180.02562 * 7 6 2
10 10 C 1.46499 * 119.99795 * 180.02562 * 9 7 6
11 11 H 1.09000 * 110.64741 * 31.84944 * 10 9 7
12 12 C 1.54337 * 111.00057 * 268.77275 * 10 9 7
13 13 N 1.47017 * 107.26706 * 219.60429 * 12 10 9
14 14 C 1.36939 * 125.64726 * 178.85094 * 13 12 10
15 15 H 1.08007 * 119.99950 * 342.93837 * 14 13 12
16 16 C 1.38808 * 120.00034 * 162.94507 * 14 13 12
17 17 N 1.31621 * 119.99791 * 332.14307 * 16 14 13
18 18 Si 1.86798 * 120.00108 * 151.87355 * 16 14 13
19 19 H 1.48503 * 109.47019 * 180.27696 * 18 16 14
20 20 H 1.48504 * 109.46933 * 300.26901 * 18 16 14
21 21 H 1.48491 * 109.47385 * 60.27327 * 18 16 14
22 22 C 1.47418 * 108.70401 * 358.58442 * 13 12 10
23 23 C 1.54916 * 104.83113 * 24.35737 * 22 13 12
24 24 H 1.08998 * 111.00226 * 81.06601 * 23 22 13
25 25 O 1.42900 * 111.00282 * 204.87893 * 23 22 13
26 26 H 1.09000 * 109.46869 * 269.97406 * 1 2 3
27 27 H 1.08997 * 109.46919 * 29.97466 * 1 2 3
28 28 H 1.08996 * 109.46799 * 149.97576 * 1 2 3
29 29 H 0.97001 * 120.00066 * 359.97438 * 9 7 6
30 30 H 1.09002 * 109.99092 * 100.12464 * 12 10 9
31 31 H 1.09008 * 109.77657 * 338.96437 * 12 10 9
32 32 H 0.96997 * 120.00038 * 353.69163 * 17 16 14
33 33 H 1.09001 * 110.36701 * 143.19505 * 22 13 12
34 34 H 1.09000 * 110.37153 * 265.51974 * 22 13 12
35 35 H 0.96709 * 113.99516 * 298.54258 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2419 1.0874 0.0000
4 7 3.5121 0.9982 -0.0005
5 16 3.9367 -0.5096 0.0068
6 6 2.2812 -1.1453 -0.0005
7 6 1.8395 -2.5491 -0.0006
8 8 0.6523 -2.8131 0.0002
9 7 2.7506 -3.5423 -0.0006
10 6 2.3108 -4.9397 -0.0013
11 1 1.3692 -5.0461 -0.5400
12 6 2.1736 -5.4771 1.4390
13 7 2.6774 -6.8583 1.4392
14 6 2.7493 -7.6814 2.5313
15 1 2.6873 -7.2653 3.5261
16 6 2.9021 -9.0503 2.3598
17 7 2.4481 -9.6317 1.2697
18 14 3.7587 -10.0662 3.6726
19 1 3.7989 -11.4892 3.2495
20 1 5.1445 -9.5662 3.8596
21 1 3.0140 -9.9510 4.9521
22 6 3.0863 -7.2126 0.0679
23 6 3.4008 -5.8579 -0.6146
24 1 4.3992 -5.5097 -0.3501
25 8 3.2532 -5.9525 -2.0328
26 1 -0.3633 -0.0005 1.0277
27 1 -0.3633 0.8902 -0.5134
28 1 -0.3633 -0.8897 -0.5142
29 1 3.6975 -3.3319 -0.0009
30 1 1.1271 -5.4642 1.7435
31 1 2.7672 -4.8658 2.1188
32 1 1.9272 -9.1223 0.6294
33 1 3.9756 -7.8427 0.0881
34 1 2.2731 -7.7194 -0.4516
35 1 3.8498 -6.5900 -2.4486
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001076729211.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:57:16
Heat of formation + Delta-G solvation = -10.379700 kcal
Electronic energy + Delta-G solvation = -21740.897161 eV
Core-core repulsion = 18287.477095 eV
Total energy + Delta-G solvation = -3453.420066 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.14535 -41.12014 -39.56150 -36.87448 -35.89870 -34.43030 -33.77077 -30.63859
-29.65960 -28.59081 -28.04275 -26.23347 -23.96014 -22.56078 -21.97108 -21.54692
-19.69510 -19.65087 -18.71814 -18.43647 -17.32473 -17.21933 -16.44037 -16.21727
-15.75323 -15.65286 -15.36919 -15.24854 -14.94104 -14.28765 -14.17260 -14.01610
-13.97909 -13.56943 -13.33097 -13.28849 -12.64881 -12.61642 -12.52356 -11.89133
-11.80264 -11.72089 -11.61058 -11.30171 -11.05834 -11.02117 -10.83629 -10.60648
-10.36653 -9.11451 -8.35884 -5.40782 -1.44417 -0.32475 0.33026 0.75279
1.59974 1.63563 1.67891 1.72517 1.86943 2.60450 2.73794 2.89243
3.15902 3.37205 3.43814 3.48257 3.71132 3.90628 3.94155 4.19122
4.25718 4.37280 4.63296 4.69471 4.73708 4.76888 4.88272 5.04992
5.13162 5.22276 5.61554 6.13678 6.25550 6.49648 6.73681 6.79338
6.84557 7.62840 8.16583 8.94695
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.025300 B = 0.003540 C = 0.003501
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.461853 B = 7906.905172 C = 7996.757361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.102 3.898
3 N -0.272 5.272
4 N -0.278 5.278
5 S 0.508 5.492
6 C -0.315 4.315
7 C 0.607 3.393
8 O -0.543 6.543
9 N -0.693 5.693
10 C 0.158 3.842
11 H 0.089 0.911
12 C 0.128 3.872
13 N -0.617 5.617
14 C -0.352 4.352
15 H 0.063 0.937
16 C -0.072 4.072
17 N -0.941 5.941
18 Si 1.118 2.882
19 H -0.292 1.292
20 H -0.275 1.275
21 H -0.278 1.278
22 C 0.122 3.878
23 C 0.103 3.897
24 H 0.100 0.900
25 O -0.564 6.564
26 H 0.097 0.903
27 H 0.100 0.900
28 H 0.090 0.910
29 H 0.414 0.586
30 H 0.014 0.986
31 H 0.046 0.954
32 H 0.255 0.745
33 H 0.042 0.958
34 H 0.012 0.988
35 H 0.400 0.600
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.448 17.220 -5.037 18.751
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.046 4.046
3 N -0.137 5.137
4 N -0.259 5.259
5 S 0.644 5.356
6 C -0.456 4.456
7 C 0.391 3.609
8 O -0.421 6.421
9 N -0.345 5.345
10 C 0.052 3.948
11 H 0.107 0.893
12 C 0.002 3.998
13 N -0.346 5.346
14 C -0.480 4.480
15 H 0.081 0.919
16 C -0.268 4.268
17 N -0.583 5.583
18 Si 0.941 3.059
19 H -0.218 1.218
20 H -0.201 1.201
21 H -0.204 1.204
22 C -0.004 4.004
23 C 0.042 3.958
24 H 0.118 0.882
25 O -0.372 6.372
26 H 0.115 0.885
27 H 0.119 0.881
28 H 0.108 0.892
29 H 0.252 0.748
30 H 0.032 0.968
31 H 0.064 0.936
32 H 0.065 0.935
33 H 0.060 0.940
34 H 0.029 0.971
35 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges 6.349 17.076 -4.479 18.761
hybrid contribution -1.498 0.322 -0.391 1.581
sum 4.852 17.398 -4.871 18.707
Atomic orbital electron populations
1.20590 0.82865 1.05261 1.05039 1.23240 1.01062 0.84871 0.95446
1.70702 0.97107 1.28318 1.17539 1.78633 1.09575 1.17795 1.19909
1.82194 1.06790 0.98918 1.47653 1.27564 1.00291 0.98757 1.18946
1.16597 0.85577 0.82604 0.76080 1.90821 1.17168 1.83569 1.50506
1.45540 1.09973 1.04665 1.74328 1.21610 0.98612 0.79331 0.95226
0.89303 1.21743 0.96648 0.86596 0.94816 1.44605 1.73381 1.11217
1.05386 1.20034 1.51280 0.90444 0.86245 0.91883 1.27201 1.00653
0.95162 1.03829 1.70918 1.35132 1.38106 1.14152 0.82828 0.76177
0.74200 0.72657 1.21799 1.20064 1.20364 1.22122 0.97333 0.95338
0.85644 1.23042 0.97927 0.93738 0.81095 0.88201 1.86422 1.66440
1.66090 1.18228 0.88465 0.88130 0.89153 0.74813 0.96804 0.93555
0.93458 0.93958 0.97063 0.74887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.48 9.90 71.24 0.70 -0.77 16
2 C 0.10 2.29 7.00 42.65 0.30 2.59 16
3 N -0.27 -6.42 11.54 -48.18 -0.56 -6.97 16
4 N -0.28 -6.00 12.51 37.02 0.46 -5.54 16
5 S 0.51 8.05 23.05 -56.49 -1.30 6.75 16
6 C -0.32 -6.94 6.80 24.62 0.17 -6.77 16
7 C 0.61 16.47 7.80 86.59 0.68 17.15 16
8 O -0.54 -18.45 14.54 -4.09 -0.06 -18.51 16
9 N -0.69 -17.50 5.11 -440.40 -2.25 -19.76 16
10 C 0.16 5.25 3.04 46.18 0.14 5.39 16
11 H 0.09 3.37 7.55 -2.39 -0.02 3.35 16
12 C 0.13 5.24 7.01 86.73 0.61 5.85 16
13 N -0.62 -30.19 3.29 -691.96 -2.28 -32.47 16
14 C -0.35 -19.37 10.02 84.03 0.84 -18.52 16
15 H 0.06 3.45 7.97 -2.91 -0.02 3.43 16
16 C -0.07 -4.00 5.09 84.86 0.43 -3.56 16
17 N -0.94 -56.11 12.92 21.65 0.28 -55.83 16
18 Si 1.12 49.07 30.00 68.60 2.06 51.12 16
19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16
20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
21 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16
22 C 0.12 5.28 5.03 86.86 0.44 5.72 16
23 C 0.10 3.19 4.06 31.99 0.13 3.32 16
24 H 0.10 2.55 8.01 -2.39 -0.02 2.53 16
25 O -0.56 -15.54 13.47 -148.98 -2.01 -17.55 16
26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16
27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
28 H 0.09 1.98 6.47 -2.39 -0.02 1.96 16
29 H 0.41 7.58 7.99 -92.71 -0.74 6.84 16
30 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16
31 H 0.05 1.77 8.03 -2.38 -0.02 1.75 16
32 H 0.26 15.53 6.05 -92.71 -0.56 14.97 16
33 H 0.04 1.95 7.94 -2.39 -0.02 1.93 16
34 H 0.01 0.56 6.81 -2.39 -0.02 0.55 16
35 H 0.40 7.66 9.11 -74.05 -0.67 6.99 16
Total: -1.00 -72.61 313.86 -1.26 -73.88
By element:
Atomic # 1 Polarization: 14.54 SS G_CDS: -0.04 Total: 14.49 kcal
Atomic # 6 Polarization: 5.94 SS G_CDS: 4.43 Total: 10.37 kcal
Atomic # 7 Polarization: -116.22 SS G_CDS: -4.34 Total: -120.56 kcal
Atomic # 8 Polarization: -33.99 SS G_CDS: -2.07 Total: -36.06 kcal
Atomic # 14 Polarization: 49.07 SS G_CDS: 2.06 Total: 51.12 kcal
Atomic # 16 Polarization: 8.05 SS G_CDS: -1.30 Total: 6.75 kcal
Total: -72.61 -1.26 -73.88 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076729211.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.499 kcal
(2) G-P(sol) polarization free energy of solvation -72.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.115 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds